Rh3DG212500

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
19648115 .. 19648405
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG212500.1

Sequence Viewer

Length: 291 bp
ATGTTGCCTTCTTCTTTACAGACGTCTGGGTTTGATATGGAGTATTGGAAGAAGCAAAACCTGGATTTTATTTCTCAGGTTCAGGACGTTACCATAGAGCTCAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATGTACTTGAGCATGCGGAGAGCCTGGAGAAAATGGTCATTAGGTATTTAACCCGTGAATCTAATGTTAGACGGAAGTTAAAAAATAGTAACATGATCTCCAATGCCGCAGTTACTTTTGAGAAATACGAAAGTTCAGTTAACCCATTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

11.17

Weight (kDa)

5.79

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AciI CCGC 2 cut(s) 152, 243
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 141
AjnI CCWGG 2 cut(s) 60, 159
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BciT130I CCWGG 2 cut(s) 62, 161
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 62, 161
BmrFI CCNGG 2 cut(s) 62, 161
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
BseBI CCWGG 2 cut(s) 62, 161
BseMII CTCAG 2 cut(s) 89, 115
BseYI CCCAGC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 2 cut(s) 152, 243
BspCNI CTCAG 2 cut(s) 88, 114
BssMI GATC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 62, 161
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 75, 101
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstNI CCWGG 2 cut(s) 62, 161
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 60, 159
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 149, 229
CviJI RGCY 2 cut(s) 100, 159
CviKI_1 RGCY 2 cut(s) 100, 159
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 75, 101
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 60, 159
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 152, 232
FaiI YATR 5 cut(s) 38, 95, 138, 150, 230
FatI CATG 2 cut(s) 148, 228
Fnu4HI GCNGC 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 152, 232
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 18
HpyCH4IV ACGT 2 cut(s) 23, 87
HpyF3I CTNAG 2 cut(s) 75, 101
HpySE526I ACGT 2 cut(s) 23, 87
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 152, 232
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 8 cut(s) 12, 47, 62, 68, 74, 93, 146, 173
MaeII ACGT 2 cut(s) 23, 87
MaeIII GTNAC 3 cut(s) 88, 224, 247
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 3, 61
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 120
MseI TTAA 4 cut(s) 114, 185, 215, 276
MspR9I CCNGG 2 cut(s) 62, 161
MvaI CCWGG 2 cut(s) 62, 161
NdeII GATC 1 cut(s) 231
NlaIII CATG 2 cut(s) 152, 232
NspI RCATGY 1 cut(s) 152
PaeI GCATGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 60, 159
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 60, 159
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 114, 185, 215, 276
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 62, 161
SduI GDGCHC 1 cut(s) 102
SetI ASST 7 cut(s) 26, 63, 81, 90, 102, 137, 182
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 152
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 152, 243
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 60, 159
TaiI ACGT 2 cut(s) 26, 90
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 4 cut(s) 114, 185, 215, 276
Tru9I TTAA 4 cut(s) 114, 185, 215, 276
TscAI CASTG 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 109
XceI RCATGY 1 cut(s) 152
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.