Rorug03G0137600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000241
Physical Location & Seq
Forward (+)
11291503 .. 11297530
6028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0137600.1

Sequence Viewer

Length: 855 bp
ATGGCGCGAAGCGTCGGGTTCTCTCTGCCGGTGACCGTCGTCGTTGTCGCCATCGGCTACATCTACTTCTCCACCGTCTTCATTTTCGTAGACCGGTGGTTCGGTCTGTGGTCGTCGCCGGGGTTAATGAACGCCGCCATTTTCACCGCCGTGGCCGCCATGTGCGTCTACAACTACTCCGTCTCCGTGTTCCGGGATCCGGGTCGGGTCCCCTCCACGTACATGCCCGATGTCGAGGATTCCGAAAACCCTATCCACGAGATCAAGCGCAAGGGAGGGGATTTGAGATATTGCCAAAAGTGTTCTCACTATAAGCCAGCTCGCGCACATCATTGTCGTGTATGCAAGAGATGCATTTTACGAATGGACCATCATTGCATATGGATTAATAATTGCGTCGGCCATGCAAACTATAAGGTCTTCTTTGTGTTCGTTGTGTATGCTGTTATAGCATGCCTATATTCCCTGGTGTTGCTATTGGGTAGTCTAGCTAATGATTTTGAAAAGGATGAGGAGCAAAGTGCAGACTCTTTTACAACTGTATATATCATTTCTGGGCTATTGCTATTTCCCTTGTGTGTAGCACTGAGTGTTCTATTAGGTTGGCATATCTACCTCATTTTGCAAAACAAGACCACAATTGAGTACCATGAAGGGGTAAGAGCTATGTGGCTTGCAGAGAAAGGAGGACAAATCTATTCACATCCATATGATCTTGGTACCTATCAAAATTTGTCAATGGTACTGGGTCCAAATATCTTTAGTTGGTTACTCCCCACATCAGGACATATTGGATCAGGACTTCGCTTTCGTACAGCCTACGATTACCCTTCCAGTGGTTCAACGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

284

Amino Acids

32.0

Weight (kDa)

8.28

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 217 3.1e-41 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 719
AccI GTMKAC 2 cut(s) 90, 168
AccII CGCG 2 cut(s) 7, 324
AciI CCGC 3 cut(s) 135, 147, 156
AclWI GGATC 3 cut(s) 191, 204, 802
AcoI YGGCCR 2 cut(s) 153, 400
AcsI RAATTY 1 cut(s) 730
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 5 cut(s) 221, 647, 721, 744, 814
AfiI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 503, 843
AjnI CCWGG 1 cut(s) 465
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 3 cut(s) 320, 491, 665
AluI AGCT 3 cut(s) 320, 491, 665
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 191, 204, 802
AoxI GGCC 2 cut(s) 153, 400
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 4 cut(s) 83, 115, 792, 824
AseI ATTAAT 1 cut(s) 387
AsiGI ACCGGT 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 719
AspLEI GCGC 3 cut(s) 7, 270, 326
AspS9I GGNCC 3 cut(s) 208, 367, 749
AsuC2I CCSGG 3 cut(s) 120, 194, 201
AsuHPI GGTGA 2 cut(s) 43, 136
AvaII GGWCC 3 cut(s) 208, 367, 749
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 719
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 70, 412
BccI CCATC 2 cut(s) 59, 378
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 3 cut(s) 120, 194, 201
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 488
BisI GCNGC 2 cut(s) 135, 156
BlsI GCNGC 2 cut(s) 136, 157
Bme1390I CCNGG 4 cut(s) 120, 194, 201, 467
Bme18I GGWCC 3 cut(s) 208, 367, 749
BmgT120I GGNCC 3 cut(s) 208, 367, 749
BmiI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BmrFI CCNGG 4 cut(s) 120, 194, 201, 467
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 70, 412
BpuMI CCSGG 3 cut(s) 120, 194, 201
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 119, 150, 465
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 161, 167, 191, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
Bse118I RCCGGY 2 cut(s) 28, 93
Bse1I ACTGG 2 cut(s) 750, 834
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 119, 150, 465
BseGI GGATG 2 cut(s) 514, 703
BseLI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 750, 834
BseRI GAGGAG 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 2 cut(s) 7, 324
BshFI GGCC 2 cut(s) 155, 402
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 93
BsiSI CCGG 5 cut(s) 29, 94, 119, 193, 200
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 155, 402
Bsp143I GATC 4 cut(s) 196, 261, 712, 794
BspACI CCGC 3 cut(s) 135, 147, 156
BspANI GGCC 2 cut(s) 155, 402
BspCNI CTCAG 1 cut(s) 579
BspFNI CGCG 2 cut(s) 7, 324
BspLI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BspPI GGATC 3 cut(s) 191, 204, 802
BspT107I GGYRCC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 28, 93
BsrI ACTGG 2 cut(s) 750, 834
BssAI RCCGGY 2 cut(s) 28, 93
BssECI CCNNGG 3 cut(s) 119, 150, 465
BssMI GATC 4 cut(s) 196, 261, 712, 794
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 3 cut(s) 37, 76, 541
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 4 cut(s) 318, 322, 454, 675
BstDEI CTNAG 1 cut(s) 587
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 514, 703
BstFNI CGCG 2 cut(s) 7, 324
BstHHI GCGC 3 cut(s) 7, 270, 326
BstKTI GATC 4 cut(s) 199, 264, 715, 797
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 4 cut(s) 196, 261, 712, 794
BstMWI GCNNNNNNNGC 3 cut(s) 155, 351, 449
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 226, 456
BstPAI GACNNNNGTC 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 4 cut(s) 118, 192, 199, 465
BstUI CGCG 2 cut(s) 7, 324
BstV2I GAAGAC 2 cut(s) 70, 412
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 155, 402
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 514, 703
BtsIMutI CAGTG 2 cut(s) 584, 841
Cac8I GCNNGC 4 cut(s) 318, 322, 454, 675
CfoI GCGC 3 cut(s) 7, 270, 326
Cfr10I RCCGGY 2 cut(s) 28, 93
Cfr13I GGNCC 3 cut(s) 208, 367, 749
CseI GACGC 2 cut(s) 154, 385
Csp6I GTAC 5 cut(s) 220, 646, 720, 743, 813
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 5 cut(s) 160, 223, 404, 453, 650
CviQI GTAC 5 cut(s) 220, 646, 720, 743, 813
DdeI CTNAG 1 cut(s) 587
DpnI GATC 4 cut(s) 198, 263, 714, 796
DpnII GATC 4 cut(s) 196, 261, 712, 794
DraIII CACNNNGTG 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 153, 400
Eco47I GGWCC 3 cut(s) 208, 367, 749
Eco91I GGTNACC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 5 cut(s) 163, 226, 407, 456, 653
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 194
FatI CATG 5 cut(s) 159, 222, 403, 452, 649
FauNDI CATATG 2 cut(s) 380, 709
FblI GTMKAC 2 cut(s) 90, 168
Fnu4HI GCNGC 2 cut(s) 135, 156
FokI GGATG 2 cut(s) 521, 690
Fsp4HI GCNGC 2 cut(s) 135, 156
FspBI CTAG 1 cut(s) 488
GlaI GCGC 3 cut(s) 6, 269, 325
GluI GCNGC 2 cut(s) 135, 156
HaeIII GGCC 2 cut(s) 155, 402
HapII CCGG 5 cut(s) 29, 94, 119, 193, 200
HgaI GACGC 2 cut(s) 154, 385
HhaI GCGC 3 cut(s) 7, 270, 326
Hin1II CATG 5 cut(s) 163, 226, 407, 456, 653
Hin6I GCGC 3 cut(s) 5, 268, 324
HinP1I GCGC 3 cut(s) 5, 268, 324
HinfI GANTC 2 cut(s) 239, 527
HpaII CCGG 5 cut(s) 29, 94, 119, 193, 200
HphI GGTGA 2 cut(s) 43, 136
Hpy166II GTNNAC 2 cut(s) 91, 169
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 783, 798
Hpy8I GTNNAC 2 cut(s) 91, 169
Hpy99I CGWCG 5 cut(s) 17, 41, 44, 118, 401
HpyAV CCTTC 2 cut(s) 647, 840
HpyCH4III ACNGT 3 cut(s) 37, 76, 541
HpyCH4IV ACGT 2 cut(s) 218, 845
HpyCH4V TGCA 7 cut(s) 345, 354, 378, 407, 524, 625, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 351, 449
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 2 cut(s) 218, 845
Hsp92II CATG 5 cut(s) 163, 226, 407, 456, 653
HspAI GCGC 3 cut(s) 5, 268, 324
KflI GGGWCCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 196, 261, 712, 794
LmnI GCTCC 1 cut(s) 514
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 488
MaeII ACGT 2 cut(s) 218, 845
MaeIII GTNAC 2 cut(s) 31, 768
MalI GATC 4 cut(s) 198, 263, 714, 796
MboI GATC 4 cut(s) 196, 261, 712, 794
MboII GAAGA 2 cut(s) 70, 412
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 1 cut(s) 196
MluCI AATT 3 cut(s) 391, 639, 730
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 6 cut(s) 223, 229, 269, 505, 626, 680
Mph1103I ATGCAT 1 cut(s) 356
MseI TTAA 2 cut(s) 125, 387
MslI CAYNNNNRTG 4 cut(s) 149, 221, 336, 708
MspI CCGG 5 cut(s) 29, 94, 119, 193, 200
MspR9I CCNGG 4 cut(s) 120, 194, 201, 467
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 2 cut(s) 7, 324
MwoI GCNNNNNNNGC 3 cut(s) 155, 351, 449
NciI CCSGG 3 cut(s) 120, 194, 201
NdeI CATATG 2 cut(s) 380, 709
NdeII GATC 4 cut(s) 196, 261, 712, 794
NlaIII CATG 5 cut(s) 163, 226, 407, 456, 653
NlaIV GGNNCC 5 cut(s) 198, 209, 210, 721, 750
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 356
NspI RCATGY 2 cut(s) 226, 456
OliI CACNNNNGTG 1 cut(s) 149
PaeI GCATGC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 2 cut(s) 136, 157
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 5 cut(s) 198, 209, 210, 721, 750
PspPI GGNCC 3 cut(s) 208, 367, 749
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 5 cut(s) 221, 647, 721, 744, 814
RsaNI GTAC 5 cut(s) 220, 646, 720, 743, 813
RseI CAYNNNNRTG 4 cut(s) 149, 221, 336, 708
SaqAI TTAA 2 cut(s) 125, 387
SatI GCNGC 2 cut(s) 135, 156
Sau3AI GATC 4 cut(s) 196, 261, 712, 794
Sau96I GGNCC 3 cut(s) 208, 367, 749
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 120, 194, 201, 467
SetI ASST 9 cut(s) 221, 322, 420, 493, 604, 618, 667, 725, 848
SfaNI GCATC 1 cut(s) 341
SinI GGWCC 3 cut(s) 208, 367, 749
SmiMI CAYNNNNRTG 4 cut(s) 149, 221, 336, 708
SphI GCATGC 1 cut(s) 456
Sse9I AATT 3 cut(s) 391, 639, 730
SsiI CCGC 3 cut(s) 135, 147, 156
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 4 cut(s) 118, 192, 199, 465
TaaI ACNGT 3 cut(s) 37, 76, 541
TaiI ACGT 2 cut(s) 221, 848
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 92
TasI AATT 3 cut(s) 391, 639, 730
TauI GCSGC 2 cut(s) 137, 158
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 125, 387
Tru9I TTAA 2 cut(s) 125, 387
TscAI CASTG 2 cut(s) 591, 841
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 70, 143, 666
TspGWI ACGGA 2 cut(s) 169, 175
TspRI CASTG 2 cut(s) 591, 841
VpaK11BI GGWCC 3 cut(s) 208, 367, 749
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 226, 456
XmiI GTMKAC 2 cut(s) 90, 168
XspI CTAG 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.