pycom07g14430

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000241
Physical Location & Seq
Reverse (-)
16386464 .. 16387619
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14430.1

Sequence Viewer

Length: 444 bp
ATGGAAGGCTCCACGCCAACACTAATATTGGATAATATTCGGAACTTGAGTATCGATTGTGAAACCTTGAAGAACAAGCTTGTTCCTGCAGTGGTCACTCTTCTTAGGGGAATGCCTAATCTGGATATTTTGTGCACAGCGGCTAGCTGTGTAAATTTGGATTTGGCTCCCGAAAAAGCAAGTCACTTTGGTAATGCATACTGGAAACGGCAAAACCTTCCTTGCAATCATCAGCTTAAGGAGCTAAGCTTAAAGAATTCCTATGGATCTAATGAAATCGAGTTTGCAAGATATATTCTCGAGCATACTGATAGGAGCATATTTATGCGCCTTAGTTTGCTTTACTTTAAGCTATTTTCGTGTGTTTGTAGGTCCAAAGGGCTAAAGGAGCAAAAAGATGCATTTTGGAGACTTTTGGAGCACTTTTGGGCTAAGGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

148

Amino Acids

16.9

Weight (kDa)

8.54

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 154, 256
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 6 cut(s) 79, 147, 235, 244, 249, 352
AluI AGCT 6 cut(s) 79, 147, 235, 244, 249, 352
Alw21I GWGCWC 2 cut(s) 137, 423
Alw26I GTCTC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 133
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 154, 256
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 372
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 34, 67
Bbv12I GWGCWC 2 cut(s) 137, 423
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 10, 168
BmsI GCATC 1 cut(s) 388
BmtI GCTAGC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 54
BseGI GGATG 1 cut(s) 442
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 137, 423
BsiHKCI CYCGRG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 137, 423
Bsp143I GATC 1 cut(s) 266
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 10, 168
BspMAI CTGCAG 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 274
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 206
BssMI GATC 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 104, 245, 332, 432
BstF5I GGATG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 241, 388
BstSFI CTRYAG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 372
ClaI ATCGAT 1 cut(s) 54
DdeI CTNAG 4 cut(s) 104, 245, 332, 432
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 256
EcoT22I ATGCAT 2 cut(s) 199, 403
FaiI YATR 6 cut(s) 199, 264, 294, 306, 320, 326
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 330
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 77, 247
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 122, 170, 299
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 6 cut(s) 89, 135, 197, 225, 287, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 388
HpyF3I CTNAG 4 cut(s) 104, 245, 332, 432
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 6 cut(s) 14, 172, 241, 315, 388, 418
LpnPI CCDG 3 cut(s) 99, 107, 187
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 94, 182
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 2 cut(s) 82, 92
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 137, 423
MluCI AATT 2 cut(s) 154, 256
Mph1103I ATGCAT 2 cut(s) 199, 403
MseI TTAA 3 cut(s) 237, 251, 348
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 241, 388
NdeII GATC 1 cut(s) 266
NheI GCTAGC 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 10, 168
NmuCI GTSAC 2 cut(s) 94, 182
NsiI ATGCAT 2 cut(s) 199, 403
PaeR7I CTCGAG 1 cut(s) 299
PctI GAATGC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 10, 168
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 237, 251, 348
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 372
SduI GDGCHC 2 cut(s) 137, 423
SetI ASST 9 cut(s) 68, 81, 149, 219, 237, 246, 251, 354, 374
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 87
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 372
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 46, 236, 299
SmoI CTYRAG 3 cut(s) 46, 236, 299
Sse9I AATT 2 cut(s) 154, 256
SsiI CCGC 1 cut(s) 140
SspI AATATT 2 cut(s) 27, 37
SspMI CTAG 1 cut(s) 144
TaqI TCGA 3 cut(s) 54, 279, 300
TasI AATT 2 cut(s) 154, 256
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 237, 251, 348
Tru9I TTAA 3 cut(s) 237, 251, 348
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 2 cut(s) 94, 182
Tsp45I GTSAC 2 cut(s) 94, 182
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 96
Vha464I CTTAAG 1 cut(s) 236
VneI GTGCAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 2 cut(s) 154, 256
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 1 cut(s) 144
Zsp2I ATGCAT 2 cut(s) 199, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.