MD00G1221800.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000241
Physical Location & Seq
Reverse (-)
52607981 .. 52609164
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1221800.v1.1.491

Sequence Viewer

Length: 933 bp
ATGCCTTCCGTTGTTAAAACACCTTCGGTTGCTTTTTCCTCCAACCTTGAATACTTGGAGTTGATGAATGTAGAAATAAAAGATGAGGGGTTTTTCAAGTGGATCTCATGTTCCTGCAAATCCATCAAGGAATTAATTCTTTGCGGTCTTGGTCGCATAAAAAATATCACCATTGAAAGCTCGTCCTTGGAAAAATTTGAACTATATGACGGCTTTTGTACTCCAATCCATCTTAACATCTCAGGTGAGAAACTTGAAACCATACGCGTTTCCTGGAGATTCCGTTCGTCTAAAGGCAAATCGTTAAATATTTTTGCTCCAAAACTTAAATATTTGTTTTGGAGGGGGAATGTGATGAAGAAAGCAAACCTGGGAAAATTAGAATGTGTAGAAGAAGCATCTATGTTTCTGGAGCCTAAAGCAGATGACTTTGACAACCTGTTAAAGGTTTTTTGCAGTATGCACAGGGTTGAATATCTTGTTATAAATGAAGCAACCATTAAGGCTTTGTTCAGCGAAGGAGGATCTACACAAGCTCGATTCAATAACCTTTCGTATTTGGAAATGGATATTCGGAGCTTTTCTGATGAGCTCGTTCCTGCATTGGTCTCTCTTTTAAGAGGAATGCCCAATTTGTGTACTTTATACGTAGGTTATCACTCAAGTCGTGACACCAAATCTGATGCATCTAGGTTTGATGTAGAACACTGGAAGCTCCAGCATCTGGAATTTATTCATCAAACTGAGGAGGTTACCATAGCGCTTTCCAGTGGGTCGAATGGGATTGAGTTTGCAAGGTATATACTCGAGAATGCCGAGAAGCTGGAGCAAATGACCATAATTCATTTACCCGAGCAATCTGATGCTGTACAGAAGCTAAATGAAAGTAAGATGATGTCCAAGGCCACAGTGATCTTCAAGGAAGACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

311

Amino Acids

35.36

Weight (kDa)

5.89

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 57 - 301 3.1e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 724
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 110, 532
AcsI RAATTY 2 cut(s) 194, 728
AfaI GTAC 3 cut(s) 220, 640, 870
AfeI AGCGCT 1 cut(s) 762
AfiI CCNNNNNNNGG 2 cut(s) 445, 724
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 8 cut(s) 50, 97, 176, 200, 257, 473, 544, 919
AjnI CCWGG 2 cut(s) 272, 369
AloI GAACNNNNNNTCC 4 cut(s) 94, 126, 268, 300
AluBI AGCT 8 cut(s) 180, 536, 579, 592, 715, 823, 877, 930
AluI AGCT 8 cut(s) 180, 536, 579, 592, 715, 823, 877, 930
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 2 cut(s) 110, 532
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 806, 851
Aor51HI AGCGCT 1 cut(s) 762
AoxI GGCC 1 cut(s) 903
ApoI RAATTY 2 cut(s) 194, 728
AseI ATTAAT 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 135, 732
AspLEI GCGC 1 cut(s) 763
AsuHPI GGTGA 2 cut(s) 160, 257
AvaI CYCGRG 2 cut(s) 806, 851
BanII GRGCYC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 594
BccI CCATC 2 cut(s) 131, 237
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 274, 371
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 690, 931
BfoI RGCGCY 1 cut(s) 764
Bme1390I CCNGG 2 cut(s) 274, 371
BmeT110I CYCGRG 2 cut(s) 806, 851
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 274, 371
BmsI GCATC 5 cut(s) 407, 673, 695, 730, 853
BpmI CTGGAG 4 cut(s) 295, 431, 701, 845
BpuEI CTTGAG 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 3 cut(s) 186, 370, 900
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 724
Bse1I ACTGG 2 cut(s) 713, 768
BseBI CCWGG 2 cut(s) 274, 371
BseDI CCNNGG 3 cut(s) 186, 370, 900
BseLI CCNNNNNNNGG 2 cut(s) 445, 724
BseMII CTCAG 2 cut(s) 255, 735
BseNI ACTGG 2 cut(s) 713, 768
BseRI GAGGAG 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 806, 851
BslI CCNNNNNNNGG 2 cut(s) 445, 724
BsmAI GTCTC 1 cut(s) 613
BsmI GAATGC 2 cut(s) 630, 817
BsnI GGCC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 613
BsoBI CYCGRG 2 cut(s) 806, 851
Bsp1286I GDGCHC 1 cut(s) 594
Bsp1407I TGTACA 1 cut(s) 868
Bsp143I GATC 3 cut(s) 102, 524, 912
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 2 cut(s) 254, 736
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 2 cut(s) 110, 532
BspTNI GGTCTC 1 cut(s) 613
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 2 cut(s) 713, 768
BssECI CCNNGG 3 cut(s) 186, 370, 900
BssMI GATC 3 cut(s) 102, 524, 912
BssT1I CCWWGG 2 cut(s) 186, 900
Bst2UI CCWGG 2 cut(s) 274, 371
Bst4CI ACNGT 1 cut(s) 910
BstAUI TGTACA 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 649
BstDEI CTNAG 2 cut(s) 241, 744
BstEII GGTNACC 1 cut(s) 751
BstENI CCTNNNNNAGG 1 cut(s) 443
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 3 cut(s) 105, 527, 915
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 3 cut(s) 102, 524, 912
BstNI CCWGG 2 cut(s) 274, 371
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 2 cut(s) 272, 369
BstSNI TACGTA 1 cut(s) 649
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 102, 524
BstYI RGATCY 2 cut(s) 102, 524
BsuRI GGCC 1 cut(s) 905
BtsIMutI CAGTG 3 cut(s) 706, 775, 915
CaiI CAGNNNCTG 1 cut(s) 724
CfoI GCGC 1 cut(s) 763
Csp6I GTAC 3 cut(s) 219, 639, 869
CviAII CATG 1 cut(s) 108
CviQI GTAC 3 cut(s) 219, 639, 869
DdeI CTNAG 2 cut(s) 241, 744
DpnI GATC 3 cut(s) 104, 526, 914
DpnII GATC 3 cut(s) 102, 524, 912
Ecl136II GAGCTC 1 cut(s) 592
Eco105I TACGTA 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 186, 900
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 613
Eco47III AGCGCT 1 cut(s) 762
Eco53kI GAGCTC 1 cut(s) 592
Eco88I CYCGRG 2 cut(s) 806, 851
Eco91I GGTNACC 1 cut(s) 751
EcoICRI GAGCTC 1 cut(s) 592
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 272, 369
EcoT14I CCWWGG 2 cut(s) 186, 900
EcoT22I ATGCAT 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 2 cut(s) 186, 900
FaeI CATG 1 cut(s) 111
FatI CATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 594
FspBI CTAG 2 cut(s) 690, 931
GlaI GCGC 1 cut(s) 762
GsuI CTGGAG 4 cut(s) 295, 431, 701, 845
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 1 cut(s) 905
HhaI GCGC 1 cut(s) 763
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HinfI GANTC 2 cut(s) 279, 540
HphI GGTGA 2 cut(s) 160, 257
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 4 cut(s) 576, 586, 682, 862
Hpy188III TCNNGA 4 cut(s) 410, 668, 725, 808
Hpy8I GTNNAC 1 cut(s) 639
HpyAV CCTTC 3 cut(s) 15, 33, 512
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 6 cut(s) 117, 456, 463, 602, 686, 794
HpyF3I CTNAG 2 cut(s) 241, 744
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 1 cut(s) 761
Kzo9I GATC 3 cut(s) 102, 524, 912
LmnI GCTCC 5 cut(s) 322, 412, 576, 720, 826
LweI GCATC 5 cut(s) 407, 673, 695, 730, 853
MaeI CTAG 2 cut(s) 690, 931
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 668, 751
MalI GATC 3 cut(s) 104, 526, 914
MboI GATC 3 cut(s) 102, 524, 912
MboII GAAGA 3 cut(s) 370, 404, 907
MflI RGATCY 2 cut(s) 102, 524
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 7 cut(s) 131, 135, 194, 377, 631, 728, 840
MluI ACGCGT 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 49, 79, 336, 515, 614, 739, 742
Mph1103I ATGCAT 1 cut(s) 688
MroXI GAANNNNTTC 2 cut(s) 135, 732
MseI TTAA 8 cut(s) 15, 134, 234, 305, 327, 443, 501, 617
MspR9I CCNGG 2 cut(s) 274, 371
Mva1269I GAATGC 2 cut(s) 630, 817
MvaI CCWGG 2 cut(s) 274, 371
MvnI CGCG 1 cut(s) 267
NdeII GATC 3 cut(s) 102, 524, 912
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 414
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 806
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PctI GAATGC 2 cut(s) 630, 817
PdmI GAANNNNTTC 2 cut(s) 135, 732
PfeI GAWTC 2 cut(s) 279, 540
PflMI CCANNNNNTGG 1 cut(s) 724
PfoI TCCNGGA 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 649
PshBI ATTAAT 1 cut(s) 134
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 272, 369
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 2 cut(s) 272, 369
PspN4I GGNNCC 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 2 cut(s) 102, 524
RsaI GTAC 3 cut(s) 220, 640, 870
RsaNI GTAC 3 cut(s) 219, 639, 869
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 8 cut(s) 15, 134, 234, 305, 327, 443, 501, 617
Sau3AI GATC 3 cut(s) 102, 524, 912
ScrFI CCNGG 2 cut(s) 274, 371
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 5 cut(s) 407, 673, 695, 730, 853
Sfr274I CTCGAG 1 cut(s) 806
SlaI CTCGAG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 661, 806
SmoI CTYRAG 2 cut(s) 661, 806
SnaBI TACGTA 1 cut(s) 649
Sse9I AATT 7 cut(s) 131, 135, 194, 377, 631, 728, 840
SsiI CCGC 1 cut(s) 144
SspI AATATT 2 cut(s) 310, 332
SspMI CTAG 2 cut(s) 690, 931
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 272, 369
StyI CCWWGG 2 cut(s) 186, 900
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 1 cut(s) 651
TaqI TCGA 3 cut(s) 538, 776, 807
TasI AATT 7 cut(s) 131, 135, 194, 377, 631, 728, 840
TatI WGTACW 3 cut(s) 218, 638, 868
TfiI GAWTC 2 cut(s) 279, 540
Tru1I TTAA 8 cut(s) 15, 134, 234, 305, 327, 443, 501, 617
Tru9I TTAA 8 cut(s) 15, 134, 234, 305, 327, 443, 501, 617
TscAI CASTG 3 cut(s) 713, 775, 915
TseFI GTSAC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 6 cut(s) 80, 371, 504, 725, 833, 897
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 3 cut(s) 713, 775, 915
Van91I CCANNNNNTGG 1 cut(s) 724
VspI ATTAAT 1 cut(s) 134
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 2 cut(s) 194, 728
XhoI CTCGAG 1 cut(s) 806
XmnI GAANNNNTTC 2 cut(s) 135, 732
XspI CTAG 2 cut(s) 690, 931
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.