Rorug03G0138900

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
11394184 .. 11409872
15689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138900.1

Sequence Viewer

Length: 3801 bp
ATGGCGGCAGACTCTCAATCACGGCTGAACTCGCGGCGGAGCTACGTGGTCCACCCCGTTGACATTGAGACGCCACCTCTAACTTCCCCGGCTCCCGCCACGCCCGCCGTGTTCCGGGAAATCAAGCATTTCAAGAAATGGGTTGTGTGGTTGATACCTACTTTTGTTATCATCAACACCATCATGTTTATCATCACTATGTATGTCAACAACTGCCCCAAGAACTCGGTCTCTTGCATTGCCACGTTCTTGGGGAGGTTCTCGTTCCAGCCTTTTAAGGAGAACCCTCTTCTTGGACCATCATCGTCTACGTTACAGAAGATGGGTGCTTTAGATGTGAAAAAGGTGGTTGATGATCACCAGGGGTGGCTTCTCATCACTTGCAATTGGCTACATGGTGGAGTTTTCCATTTGTTGGCGAATATGCTGAGTCTTTTGGTTATTGGGTACCGGCTAGAGCAAGAATTTGGTTTTGTGCGGATTGGTTTGCTATATGTCATCTCTGGACTTGGTGGGAGTTTGATGTCTTCACTTTTCATCCAGTCAAATATCTCTGTTGGTGCTTCCGGTGCACTTTTTGGATTGCTGGGAGCCATGCTTTCTGAACTTATCACTAACTGGACGATATATGCTAGTAAGTTTGGAGCGCTTTTCACCCTCCTGATCATCATAGCAATCAATTTGGCAGTGGGAATTCTCCCACATGTGGATAACTTTGCTCACATTGGAGGATTCCTTTCGGGTTTCTTTCTGGGGTTCGTATTTCTTATCCGCCCTCAGTTCGGATGGGTTAACCAAAGATATGCTCCTCCAGAGTACAGATCATCTGAAGTTAAATCTAAGTTCAAGACCTATCAGTGCATTTTTTGGATCCTTTCGCTGGTTATTTTAATCGTTGGATTTACCGTTGGCCTGATTATGCTTCTTCGGGGAGTTGATGCAAATGAACATTGTTCTTGGTGTCATTATTTGTCTTGTGTTCCTACATCAAAATGGAGCTGCAATTCAGAGCCCGCATACTGCTCGGTAGCTGGGAAATCAGAAAGGTCCCGCCAAAAGTTGAAAAAGATTTTGGGGCCAAAAGTACAATCCATGTTACTTGAATATGGCTCCCCTGCTGATGTGAAGGTCCTGAAGGATAGCATCAACTATGTGGTAGAAAAGAAACACTTAGAAGACCCAGATCTTGTTTTGGAGAATATGTTTTCAATTTTTTCCTTCAAGCATAAGGTAGATGACCAACGCCTGCAAGGTGAACTAAATACGATCAGACAAACTCTCTTCCTGGAGAAATTGAAGAAACTGGATCATCCAGAGACTTACATGAACGAAAGGGTGTTGAAGGAAATCTGTAAGCACCTTGATCCAGTGATCTATCCCAAGGGAAGCTATATTATTCGAAAGGGGGAGCCTCTTGATATGATGTTCTTCATCACCCAGGGCATTGCACTCTCGTACACCATTGACCACTCAATGACCACTAAGCGTCTTGAGAAAGGAGAATGCTACGGTGAAAAGCTTTTAAGCTGGGCAGCAACTGCTACAACCTCCTTTTGCGACTTGCCTAACGCACCCAGTACCGTCAAGGCCCACAAAAATGTTGAACTCTTTGCTCTCCAGGCTGCCGATTTACAGAGTGTTTTGTCTCAGCCGTCAAGCCATTCCAGCAACGAGCTTCCCCATTCAACAGATAGTAAGGTTCAACAGAGTATTCTGTCACAATTGCGCGTCGCTGGTGTGGTCTGGGATGATGGCGGTCTCACACTGCTGCGTTTGGGAGTTCTCTCGGCTCTGGTTTGGGCCGACCGGACCCTGGGTTTGCCTGCTCGGATTTTGGGCTGTGATGCTGAGGCTGACACTGGTGTTTCAGGGAGGCTGAGGAAGCACGTTTTGGTGGCTCTGTGGAGTGCAGACGACATCTGTGGTGGCCGACGGCCAACTGCTGCAACTAGGTGCCCTAATCTGCAGCTGAATGATTCGGTACAAGTGGAGATGGATGAAGAGTCTAATGACCGTGCAAGTATGCTAGGAAATTCGATTTTAAAGAAGGGAGAGCGGAAGACAAAAGAGCAGGATTTAGATCATTTGTCAAATATCGAGATGCCTATTTTATACATAGTTATGAAGATTATATATGCAGTGTTTCTTATCCCAGCGGTGTTACTTGTAGCAATAATATCCCCGGATGAGTCTCAATTTTTCATCTTCTCAAGTTTTATCACTATGTTACTGGATCCTTTGTTACTGTATATTCCTCTCATTAAAGAGGAGACTAAGTGCCTCATGTTGGACAAGAAGTTGATGATAGCAGCTCTTATTCTGCGAATCGTCACAGATCTTCGCTATGTAATGAAAATAGGTTCTAAGATTAAAAAGCGGCGGGGAACTCCTAAGGAAATAGATGGGAGCATCGCAACTGACGTTATCGCTATTCTTCCTATTCCACAAGTTGTTTTAGTTTTCCTTCCAAGAATGAGGGGCTCTGGATCTTTGATTATAGTGAAGTTTCTCAACTCGCTTATTCTATTCCAATATCTTGTACGAGTTTATCCTATCTACAGATATTGTAAGAATCTTAACAAGAAGATAAATTTGTCGAGGACTCTTGAGCGGGCTTGGATTCCAAGTTTGGTCAATATTCTCATTTACATCCTTGCCAGTTATGTACTAGGGACATTTTGGTATTTTTTCTCTATCCAGCGAGAGATAGAATGTTGGGAATATGCTTGCCAGAGTGAAAAAGGATGTGAGTTTAGTACTCACTGCGATGCCAGTACATTCAGAAATGTTACATTTCTAAAAGTTGCATGTTGTGTAAATCCACAAAATGCAGCAATATTCGATTTTGGTATATTTATTTATGCTCTTCAATCTGGCGTGCAAGAATCAACAAACTTACCAGAAAAATTATTGCTATGTTTCTCATGGGGCCTACGAAATTTGAGTTCTTTTGCTTCCAACCTCAACTCCAGTACCTATGGATGGGAAACCTTATTTGTGATTGCTATTTCTATAAGTGGTTTGGTACTATTTATATATTTCCTTGGACATGTGCAGACATTTATGCAGCTAGCTGGCAAATCAGAAAGGTCCCATCAAAAGTGGAAAAGGACTTTGGAACCAAAAATAAAATCCATGTTATCTGAATATGGCCTTCCTGATGAAGTGAAAAAAAGCATCGTCCATGTGGTAAAAGAGAAAGATTTGGATGACCCAGATCTTCTTCTGGAGAATATGTTTTCAATTTTTACCTTCAAGCATGAAGTAGGTGACCAGACGCTAGCTGAACTAATTTCCATCAGACAGAGTCTCTTCTTGGAGAAGTTAAAGGCACTCCATCGCACAGGGACTTACATGAACGAAAGGGTGTTGAAGGAGATCTGTAAGCACCTTGATCCAGTGATCTATCCTAGGGGAAGCTATATTATCCAAGAGGGGGAGCCTCTTGATATGATGTTCTTCATCACCCAGGGTATTGCACTCAAGTACACCACTGCCCGCTCAAAAACCACTACGCGTCTTGAGAAAGGAGACTGCTACGGTGAAGATCTTCTGAGCTGGGCAGGAACTGCAACAACCTCCTTTTCCGACTTGCCTAACTCACGCAGTACTGTCAAGGCCCACAAAAATGTCGAACTCTTTGTTCTCCAGGCTGCCGATTTACAGAGAGTTTTGTCTCAGCCGTCGAACCAATATTCCAGCAATAAGGGCACCCATTCAACAGATAGTACGGTTCAACAGAGTTGTCTGTCACAATTGCGCGATATTTTAATTAAACCAGAATGGCTCACTCTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1266

Amino Acids

142.52

Weight (kDa)

8.71

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 120 - 256 1.3e-39 Rhomboid domain
cNMP_binding PF00027 458 - 549 2.6e-07 Cyclic nucleotide-binding domain
cNMP_binding PF00027 1135 - 1227 1e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 3 cut(s) 447, 1953, 3710
AccB7I CCANNNNNTGG 1 cut(s) 415
AccBSI CCGCTC 3 cut(s) 2056, 2611, 3501
AccI GTMKAC 1 cut(s) 308
AccII CGCG 4 cut(s) 34, 1728, 3517, 3762
AclWI GGATC 8 cut(s) 865, 878, 1314, 1358, 2228, 2241, 2494, 3389
AcoI YGGCCR 2 cut(s) 1927, 1934
AcsI RAATTY 5 cut(s) 464, 693, 2032, 2590, 2938
AcuI CTGAAG 2 cut(s) 849, 1154
AcyI GRCGYC 1 cut(s) 71
AfeI AGCGCT 1 cut(s) 648
AflIII ACRYGT 3 cut(s) 703, 3049, 3515
AjnI CCWGG 7 cut(s) 360, 1284, 1437, 1617, 1812, 3468, 3648
AjuI GAANNNNNNNTTGG 6 cut(s) 1055, 1087, 1874, 1906, 3098, 3130
AloI GAACNNNNNNTCC 2 cut(s) 3680, 3712
Alw21I GWGCWC 1 cut(s) 574
Alw44I GTGCAC 1 cut(s) 570
AlwI GGATC 8 cut(s) 865, 878, 1314, 1358, 2228, 2241, 2494, 3389
AlwNI CAGNNNCTG 2 cut(s) 1538, 3569
Aor51HI AGCGCT 1 cut(s) 648
AoxI GGCC 9 cut(s) 910, 1076, 1587, 1800, 1927, 1934, 2929, 3151, 3618
ApaLI GTGCAC 1 cut(s) 570
ApoI RAATTY 5 cut(s) 464, 693, 2032, 2590, 2938
ArsI GACNNNNNNTTYG 2 cut(s) 1801, 1833
Asp700I GAANNNNTTC 1 cut(s) 3549
Asp718I GGTACC 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 3410
AspLEI GCGC 3 cut(s) 649, 1728, 3762
AsuC2I CCSGG 3 cut(s) 89, 116, 2183
AsuHPI GGTGA 8 cut(s) 350, 646, 1265, 1426, 1523, 3281, 3457, 3554
AsuII TTCGAA 1 cut(s) 1399
AsuNHI GCTAGC 2 cut(s) 3070, 3280
AvaII GGWCC 6 cut(s) 49, 296, 1047, 1129, 1809, 3090
AvrII CCTAGG 1 cut(s) 3410
AxyI CCTNAGG 1 cut(s) 2391
BaeGI GKGCMC 3 cut(s) 574, 1958, 3713
BaeI ACNNNNGTAYC 2 cut(s) 2956, 2989
BamHI GGATCC 2 cut(s) 870, 2233
BanI GGYRCC 3 cut(s) 447, 1953, 3710
BanII GRGCYC 2 cut(s) 1014, 2483
BbsI GAAGAC 3 cut(s) 519, 1182, 2066
Bbv12I GWGCWC 1 cut(s) 574
BbvCI CCTCAGC 2 cut(s) 1848, 1877
BceAI ACGGC 5 cut(s) 38, 92, 1636, 1949, 3667
BcgI CGANNNNNNTGC 2 cut(s) 1005, 1039
BciT130I CCWGG 7 cut(s) 362, 1286, 1439, 1619, 1814, 3470, 3650
BclI TGATCA 2 cut(s) 355, 663
BcnI CCSGG 3 cut(s) 89, 116, 2183
BfaI CTAG 8 cut(s) 455, 633, 1950, 2027, 2669, 3071, 3281, 3411
BfmI CTRYAG 2 cut(s) 1964, 2557
BfoI RGCGCY 1 cut(s) 650
BglII AGATCT 5 cut(s) 1183, 2335, 3217, 3378, 3547
BlnI CCTAGG 1 cut(s) 3410
BmcAI AGTACT 2 cut(s) 2758, 3610
Bme18I GGWCC 6 cut(s) 49, 296, 1047, 1129, 1809, 3090
BmrI ACTGGG 1 cut(s) 1569
BmsI GCATC 7 cut(s) 928, 1152, 1834, 2091, 2418, 2758, 3186
BmtI GCTAGC 2 cut(s) 3074, 3284
BmuI ACTGGG 1 cut(s) 1569
BpiI GAAGAC 3 cut(s) 519, 1182, 2066
BpmI CTGGAG 6 cut(s) 795, 1307, 1601, 2953, 3248, 3632
Bpu10I CCTNAGC 2 cut(s) 1848, 1877
Bpu14I TTCGAA 1 cut(s) 1399
BpuEI CTTGAG 5 cut(s) 1511, 2194, 2627, 3467, 3542
BpuMI CCSGG 3 cut(s) 89, 116, 2183
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 2079
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 235, 1763
BsaWI WCCGGW 2 cut(s) 566, 1806
BsaXI ACNNNNNCTCC 8 cut(s) 1187, 1217, 2261, 2291, 2951, 2981, 3221, 3251
Bse118I RCCGGY 1 cut(s) 450
Bse21I CCTNAGG 1 cut(s) 2391
Bse3DI GCAATG 2 cut(s) 237, 1443
Bse8I GATNNNNATC 1 cut(s) 2079
BseBI CCWGG 7 cut(s) 362, 1286, 1439, 1619, 1814, 3470, 3650
BseJI GATNNNNATC 1 cut(s) 2079
BseMI GCAATG 2 cut(s) 237, 1443
BseMII CTCAG 7 cut(s) 419, 791, 1661, 1839, 1868, 3545, 3692
BseRI GAGGAG 2 cut(s) 798, 2282
BseSI GKGCMC 3 cut(s) 574, 1958, 3713
BseYI CCCAGC 5 cut(s) 586, 1031, 1527, 2152, 3558
BsgI GTGCAG 2 cut(s) 1929, 3074
Bsh1236I CGCG 4 cut(s) 34, 1728, 3517, 3762
Bsh1285I CGRYCG 1 cut(s) 1807
BshFI GGCC 9 cut(s) 912, 1078, 1589, 1802, 1929, 1936, 2931, 3153, 3620
BshNI GGYRCC 3 cut(s) 447, 1953, 3710
BsiEI CGRYCG 1 cut(s) 1807
BsiHKAI GWGCWC 1 cut(s) 574
BsiSI CCGG 6 cut(s) 89, 115, 451, 567, 1807, 2183
BslFI GGGAC 4 cut(s) 1033, 2686, 3076, 3361
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 4 cut(s) 1033, 2686, 3076, 3361
BsmI GAATGC 1 cut(s) 1508
BsnI GGCC 9 cut(s) 912, 1078, 1589, 1802, 1929, 1936, 2931, 3153, 3620
Bso31I GGTCTC 2 cut(s) 235, 1763
Bsp119I TTCGAA 1 cut(s) 1399
Bsp1286I GDGCHC 5 cut(s) 574, 1014, 1958, 2483, 3713
BspANI GGCC 9 cut(s) 912, 1078, 1589, 1802, 1929, 1936, 2931, 3153, 3620
BspCNI CTCAG 7 cut(s) 420, 790, 1660, 1840, 1869, 3546, 3691
BspFNI CGCG 4 cut(s) 34, 1728, 3517, 3762
BspMAI CTGCAG 1 cut(s) 1968
BspOI GCTAGC 2 cut(s) 3074, 3284
BspPI GGATC 8 cut(s) 865, 878, 1314, 1358, 2228, 2241, 2494, 3389
BspQI GCTCTTC 1 cut(s) 2871
BspT104I TTCGAA 1 cut(s) 1399
BspT107I GGYRCC 3 cut(s) 447, 1953, 3710
BspTNI GGTCTC 2 cut(s) 235, 1763
BsrBI CCGCTC 3 cut(s) 2056, 2611, 3501
BsrDI GCAATG 2 cut(s) 237, 1443
BsrFI RCCGGY 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 3 cut(s) 1380, 3043, 3410
Bst2UI CCWGG 7 cut(s) 362, 1286, 1439, 1619, 1814, 3470, 3650
Bst4CI ACNGT 8 cut(s) 907, 1511, 1582, 2015, 2247, 3542, 3613, 3733
Bst6I CTCTTC 5 cut(s) 294, 1286, 1995, 2871, 3317
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 2 cut(s) 1538, 3569
BstBAI YACGTR 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 1399
BstEII GGTNACC 1 cut(s) 3269
BstFNI CGCG 4 cut(s) 34, 1728, 3517, 3762
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 3 cut(s) 649, 1728, 3762
BstMCI CGRYCG 1 cut(s) 1807
BstMWI GCNNNNNNNGC 9 cut(s) 31, 104, 569, 1538, 1619, 1665, 1882, 3569, 3708
BstNI CCWGG 7 cut(s) 362, 1286, 1439, 1619, 1814, 3470, 3650
BstNSI RCATGY 3 cut(s) 707, 2811, 3053
BstPI GGTNACC 1 cut(s) 3269
BstSFI CTRYAG 2 cut(s) 1964, 2557
BstSLI GKGCMC 3 cut(s) 574, 1958, 3713
BstUI CGCG 4 cut(s) 34, 1728, 3517, 3762
BstV2I GAAGAC 3 cut(s) 519, 1182, 2066
BstX2I RGATCY 8 cut(s) 870, 1183, 2233, 2335, 2486, 3217, 3378, 3547
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 8 cut(s) 870, 1183, 2233, 2335, 2486, 3217, 3378, 3547
Bsu36I CCTNAGG 1 cut(s) 2391
BsuRI GGCC 9 cut(s) 912, 1078, 1589, 1802, 1929, 1936, 2931, 3153, 3620
BtgZI GCGATG 3 cut(s) 2395, 2781, 3323
BtsI GCAGTG 5 cut(s) 693, 1763, 2145, 2761, 3492
BtsIMutI CAGTG 9 cut(s) 693, 863, 1374, 1763, 1857, 2145, 2761, 3405, 3492
CaiI CAGNNNCTG 2 cut(s) 1538, 3569
CfoI GCGC 3 cut(s) 649, 1728, 3762
Cfr10I RCCGGY 1 cut(s) 450
CseI GACGC 5 cut(s) 79, 1475, 1717, 3286, 3506
DraI TTTAAA 1 cut(s) 2043
EaeI YGGCCR 2 cut(s) 1927, 1934
Eam1104I CTCTTC 5 cut(s) 294, 1286, 1995, 2871, 3317
EarI CTCTTC 5 cut(s) 294, 1286, 1995, 2871, 3317
EciI GGCGGA 2 cut(s) 52, 761
Eco130I CCWWGG 3 cut(s) 1380, 3043, 3410
Eco24I GRGCYC 2 cut(s) 1014, 2483
Eco31I GGTCTC 2 cut(s) 235, 1763
Eco47I GGWCC 6 cut(s) 49, 296, 1047, 1129, 1809, 3090
Eco47III AGCGCT 1 cut(s) 648
Eco57I CTGAAG 2 cut(s) 849, 1154
Eco81I CCTNAGG 1 cut(s) 2391
Eco91I GGTNACC 1 cut(s) 3269
EcoO109I RGGNCCY 4 cut(s) 1047, 1129, 2929, 3090
EcoO65I GGTNACC 1 cut(s) 3269
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 7 cut(s) 360, 1284, 1437, 1617, 1812, 3468, 3648
EcoT14I CCWWGG 3 cut(s) 1380, 3043, 3410
EcoT38I GRGCYC 2 cut(s) 1014, 2483
ErhI CCWWGG 3 cut(s) 1380, 3043, 3410
Esp3I CGTCTC 1 cut(s) 62
FalI AAGNNNNNCTT 2 cut(s) 1154, 1186
FaqI GGGAC 4 cut(s) 1033, 2686, 3076, 3361
FauI CCCGC 7 cut(s) 103, 112, 1021, 1058, 2373, 2604, 3506
FbaI TGATCA 2 cut(s) 355, 663
FblI GTMKAC 1 cut(s) 308
FriOI GRGCYC 2 cut(s) 1014, 2483
FspBI CTAG 8 cut(s) 455, 633, 1950, 2027, 2669, 3071, 3281, 3411
GlaI GCGC 3 cut(s) 648, 1727, 3761
GsaI CCCAGC 5 cut(s) 590, 1035, 1531, 2156, 3562
GsuI CTGGAG 6 cut(s) 795, 1307, 1601, 2953, 3248, 3632
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 9 cut(s) 912, 1078, 1589, 1802, 1929, 1936, 2931, 3153, 3620
HapII CCGG 6 cut(s) 89, 115, 451, 567, 1807, 2183
HgaI GACGC 5 cut(s) 79, 1475, 1717, 3286, 3506
HhaI GCGC 3 cut(s) 649, 1728, 3762
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 3 cut(s) 647, 1726, 3760
HinP1I GCGC 3 cut(s) 647, 1726, 3760
HincII GTYRAC 3 cut(s) 61, 208, 793
HindII GTYRAC 3 cut(s) 61, 208, 793
HindIII AAGCTT 1 cut(s) 1517
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 6 cut(s) 89, 115, 451, 567, 1807, 2183
HphI GGTGA 8 cut(s) 350, 646, 1265, 1426, 1523, 3281, 3457, 3554
Hpy166II GTNNAC 9 cut(s) 52, 61, 208, 309, 572, 793, 1256, 1458, 3489
Hpy8I GTNNAC 9 cut(s) 52, 61, 208, 309, 572, 793, 1256, 1458, 3489
Hpy99I CGWCG 3 cut(s) 1733, 1935, 3688
HpyAV CCTTC 9 cut(s) 1120, 1129, 1228, 1336, 2041, 2474, 3164, 3262, 3367
HpyCH4III ACNGT 8 cut(s) 907, 1511, 1582, 2015, 2247, 3542, 3613, 3733
HpyCH4IV ACGT 5 cut(s) 45, 245, 311, 1887, 2421
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 104, 569, 1538, 1619, 1665, 1882, 3569, 3708
HpySE526I ACGT 5 cut(s) 45, 245, 311, 1887, 2421
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 3 cut(s) 647, 1726, 3760
KpnI GGTACC 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 355, 663
KspAI GTTAAC 1 cut(s) 793
LguI GCTCTTC 1 cut(s) 2871
LweI GCATC 7 cut(s) 928, 1152, 1834, 2091, 2418, 2758, 3186
MaeI CTAG 8 cut(s) 455, 633, 1950, 2027, 2669, 3071, 3281, 3411
MaeII ACGT 5 cut(s) 45, 245, 311, 1887, 2421
MbiI CCGCTC 3 cut(s) 2056, 2611, 3501
MfeI CAATTG 3 cut(s) 385, 1721, 3755
MflI RGATCY 8 cut(s) 870, 1183, 2233, 2335, 2486, 3217, 3378, 3547
MhlI GDGCHC 5 cut(s) 574, 1014, 1958, 2483, 3713
MluI ACGCGT 1 cut(s) 3515
MlyI GAGTC 6 cut(s) 5, 439, 2012, 2198, 2596, 3316
MmeI TCCRAC 4 cut(s) 877, 2268, 2982, 3612
MroXI GAANNNNTTC 1 cut(s) 3549
MslI CAYNNNNRTG 7 cut(s) 182, 197, 991, 1596, 2120, 2766, 3627
MspA1I CMGCKG 2 cut(s) 1969, 2156
MspI CCGG 6 cut(s) 89, 115, 451, 567, 1807, 2183
MunI CAATTG 3 cut(s) 385, 1721, 3755
Mva1269I GAATGC 1 cut(s) 1508
MvaI CCWGG 7 cut(s) 362, 1286, 1439, 1619, 1814, 3470, 3650
MvnI CGCG 4 cut(s) 34, 1728, 3517, 3762
MwoI GCNNNNNNNGC 9 cut(s) 31, 104, 569, 1538, 1619, 1665, 1882, 3569, 3708
NciI CCSGG 3 cut(s) 89, 116, 2183
NheI GCTAGC 2 cut(s) 3070, 3280
NmeAIII GCCGAG 1 cut(s) 1766
NmuCI GTSAC 4 cut(s) 1716, 2329, 3269, 3750
NspI RCATGY 3 cut(s) 707, 2811, 3053
NspV TTCGAA 1 cut(s) 1399
PacI TTAATTAA 1 cut(s) 3774
PasI CCCWGGG 3 cut(s) 1438, 1813, 3469
PciI ACATGT 2 cut(s) 703, 3049
PciSI GCTCTTC 1 cut(s) 2871
PcsI WCGNNNNNNNCGW 1 cut(s) 2418
PctI GAATGC 1 cut(s) 1508
PdmI GAANNNNTTC 1 cut(s) 3549
PfeI GAWTC 6 cut(s) 732, 1976, 2325, 2572, 2620, 2885
PflFI GACNNNGTC 1 cut(s) 3306
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 2 cut(s) 114, 1284
PleI GAGTC 6 cut(s) 5, 438, 2011, 2197, 2596, 3315
PpsI GAGTC 6 cut(s) 5, 438, 2011, 2197, 2596, 3315
Ppu21I YACGTR 1 cut(s) 46
PpuMI RGGWCCY 3 cut(s) 1047, 1129, 3090
PscI ACATGT 2 cut(s) 703, 3049
Psp5II RGGWCCY 3 cut(s) 1047, 1129, 3090
Psp6I CCWGG 7 cut(s) 360, 1284, 1437, 1617, 1812, 3468, 3648
PspEI GGTNACC 1 cut(s) 3269
PspFI CCCAGC 5 cut(s) 586, 1031, 1527, 2152, 3558
PspGI CCWGG 7 cut(s) 360, 1284, 1437, 1617, 1812, 3468, 3648
PspPPI RGGWCCY 3 cut(s) 1047, 1129, 3090
PstI CTGCAG 1 cut(s) 1968
PstNI CAGNNNCTG 2 cut(s) 1538, 3569
PsuI RGATCY 8 cut(s) 870, 1183, 2233, 2335, 2486, 3217, 3378, 3547
PsyI GACNNNGTC 1 cut(s) 3306
PvuII CAGCTG 1 cut(s) 1969
RseI CAYNNNNRTG 7 cut(s) 182, 197, 991, 1596, 2120, 2766, 3627
SapI GCTCTTC 1 cut(s) 2871
ScaI AGTACT 2 cut(s) 2758, 3610
SchI GAGTC 6 cut(s) 5, 439, 2012, 2198, 2596, 3316
SduI GDGCHC 5 cut(s) 574, 1014, 1958, 2483, 3713
SfaNI GCATC 7 cut(s) 928, 1152, 1834, 2091, 2418, 2758, 3186
SfcI CTRYAG 2 cut(s) 1964, 2557
SfuI TTCGAA 1 cut(s) 1399
SinI GGWCC 6 cut(s) 49, 296, 1047, 1129, 1809, 3090
SmiMI CAYNNNNRTG 7 cut(s) 182, 197, 991, 1596, 2120, 2766, 3627
SmlI CTYRAG 5 cut(s) 1490, 2209, 2606, 3482, 3521
SmoI CTYRAG 5 cut(s) 1490, 2209, 2606, 3482, 3521
SspI AATATT 3 cut(s) 2638, 2838, 3695
SspMI CTAG 8 cut(s) 455, 633, 1950, 2027, 2669, 3071, 3281, 3411
StyI CCWWGG 3 cut(s) 1380, 3043, 3410
TaaI ACNGT 8 cut(s) 907, 1511, 1582, 2015, 2247, 3542, 3613, 3733
TaiI ACGT 5 cut(s) 48, 248, 314, 1890, 2424
TaqI TCGA 7 cut(s) 1399, 2036, 2097, 2597, 2841, 3633, 3686
TaqII GACCGA 1 cut(s) 217
TatI WGTACW 7 cut(s) 816, 1084, 2665, 2756, 2774, 3486, 3608
TauI GCSGC 3 cut(s) 8, 37, 2380
TfiI GAWTC 6 cut(s) 732, 1976, 2325, 2572, 2620, 2885
TscAI CASTG 9 cut(s) 693, 863, 1374, 1770, 1864, 2145, 2768, 3405, 3499
TseFI GTSAC 4 cut(s) 1716, 2329, 3269, 3750
Tsp45I GTSAC 4 cut(s) 1716, 2329, 3269, 3750
TspRI CASTG 9 cut(s) 693, 863, 1374, 1770, 1864, 2145, 2768, 3405, 3499
Tth111I GACNNNGTC 1 cut(s) 3306
Van91I CCANNNNNTGG 1 cut(s) 415
VneI GTGCAC 1 cut(s) 570
VpaK11BI GGWCC 6 cut(s) 49, 296, 1047, 1129, 1809, 3090
XapI RAATTY 5 cut(s) 464, 693, 2032, 2590, 2938
XceI RCATGY 3 cut(s) 707, 2811, 3053
XmaJI CCTAGG 1 cut(s) 3410
XmiI GTMKAC 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 3549
XspI CTAG 8 cut(s) 455, 633, 1950, 2027, 2669, 3071, 3281, 3411
ZrmI AGTACT 2 cut(s) 2758, 3610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.