Rh3DG213500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
19731091 .. 19732779
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG213500.1

Sequence Viewer

Length: 1476 bp
ATGGCTACTGCAAGTTGTAAAGGTGAAGGAGGTTGTACGGAGAGTGAGAATATGATAGGAACGTTGGGTAATCTTCCCGACCCAGTTGTACATCACATTGTTTCTTTTCTTGCTATCACTGACCTCACTCGTTTTGGCTGTGTGTCCAGAAAGTGTAGAGAACTTTATCTATCAGGTCCATCCTTGAATTTTGATGAATTTTCCTTGGCTAATACATCCTCATGTTATAAACGGATGAAGTTGTTGAGGTCTTTGGATAAGTTCTTGATTCATCGTGGGGAGAATAAGATGCACAAATTTCGTATTCGGTGGGTTCCCCTTGAGTACATTGACCATGAAACACCATGCTTTTGTGGTTGTAATGAGAAGTCTCGAACGATGGCGTGGTTACACTATGCAGTAAGGTGTAATGTGCAAGTGCTTGATCTTGAGATCTCTATATTTGAGGATGAAACACCATTAGCATTTCCATGTTGCATCTTTCTGTGTGAATCTTTGAGGTCTCTGTCGGTGGATATGAATTGTAAGATTCAAATACCCTCCTTCACTTTCGTCTCTAATCTCACGTACTTGGAGCTGACAAACGTTGAAATAGAGGAAGAATCATTTTTCAAATGGATCTCACAATCCTGCAAATGCATTGAGGTATTGAATCTTGAGGATGTTCATGGGCTAAAAAATATCAACATTGAAAGCTCGTCTTTGAAATCATTATATTTTGAGTATACTTTCAGTCAGACTAGCATCTGTCATCTTAATATATCAGGTGAGAAACTTGGCAACATAACTATTGTCTGGGGATTTGATTCACCTAGCAACAAATCGTTTAATGTTTCTGCTCCAAACCTTAAAAGCTTCTATTGGGTGGGGAATTTGATGATTCACTCATATATGAGAGAGCTGGTAGGCTTAGAAGAAGTTGGGTTTTATCTAGAGCCTGAAGAAGATGAGATTGACCATGTCCTAGATGATATCGGCACTTCACACAAGCGTAGCTTTCTTGTTATAAAGGAAGATGCCATGAAGGAACTATACAAGAGAGGAATTTCGCCAACTTCGTTTGGTAATATTTGTTATTTGCGTTTGCATATTGGGAGCTTCGTCAGTGACTTAGTCCCATCAATGGTGTTTCTTTTCGGAGCAATGACAAATCTGAGTACTTTATACATCAAGTCTACTCCGCCTTTATACGACTTCGGATCTAATACATCTGGTTTCGACATGGGATACTGGGAGCAGCAAAACCTTGGTTTCATTTATAAGCTTAAAGAGGTTACAATCGAGCTTTCCAACGGATCTAATGGAATGGAGTTAGCAAGATATATTCTCGAGCATGCTCAGTGTTTGGAGAAGATGGTCGTAGTTTATCTACCCCACCAGTGTGACATTGTTGAAAGGATGTTAGATAGAAGCAAGATGATTTCTAGTGGCATAGTTGTCTTCAAGGAAAATCGATGTAAAAGAAAGCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

491

Amino Acids

56.12

Weight (kDa)

5.68

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 128 - 245 3.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 228, 1007, 1260
AccI GTMKAC 2 cut(s) 725, 1175
AciI CCGC 1 cut(s) 1181
AclI AACGTT 2 cut(s) 62, 585
AclWI GGATC 3 cut(s) 626, 1207, 1303
AcsI RAATTY 5 cut(s) 187, 197, 296, 871, 1044
AcuI CTGAAG 1 cut(s) 960
AfaI GTAC 5 cut(s) 37, 90, 326, 569, 1159
AfiI CCNNNNNNNGG 1 cut(s) 1123
AgsI TTSAA 9 cut(s) 187, 533, 590, 613, 652, 692, 706, 1394, 1444
AleI CACNNNNGTG 1 cut(s) 1380
AluBI AGCT 9 cut(s) 577, 696, 855, 901, 996, 1098, 1264, 1285, 1468
AluI AGCT 9 cut(s) 577, 696, 855, 901, 996, 1098, 1264, 1285, 1468
Alw26I GTCTC 3 cut(s) 375, 507, 559
AlwI GGATC 3 cut(s) 626, 1207, 1303
Ama87I CYCGRG 1 cut(s) 1328
ApeKI GCWGC 1 cut(s) 1237
ApoI RAATTY 5 cut(s) 187, 197, 296, 871, 1044
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 35, 779, 801
AvaI CYCGRG 1 cut(s) 1328
AvaII GGWCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 1016, 1048
BbsI GAAGAC 1 cut(s) 1432
BbvI GCAGC 1 cut(s) 1249
BccI CCATC 4 cut(s) 187, 373, 1126, 1348
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciVI GTATCC 1 cut(s) 1220
BcoDI GTCTC 3 cut(s) 375, 507, 559
BfaI CTAG 5 cut(s) 741, 813, 932, 965, 1425
BfuI GTATCC 1 cut(s) 1220
BglII AGATCT 1 cut(s) 432
BisI GCNGC 1 cut(s) 1238
BlsI GCNGC 1 cut(s) 1239
BmcAI AGTACT 1 cut(s) 1159
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 1328
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 315
BmrI ACTGGG 2 cut(s) 77, 1240
BmsI GCATC 4 cut(s) 279, 486, 753, 1006
BmuI ACTGGG 2 cut(s) 77, 1240
BpiI GAAGAC 1 cut(s) 1432
BpuEI CTTGAG 3 cut(s) 341, 449, 677
Bsa29I ATCGAT 1 cut(s) 1453
BsaAI YACGTR 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 204, 1246
Bsc4I CCNNNNNNNGG 1 cut(s) 1123
Bse1I ACTGG 3 cut(s) 83, 1235, 1378
Bse3DI GCAATG 1 cut(s) 1149
BseCI ATCGAT 1 cut(s) 1453
BseDI CCNNGG 2 cut(s) 204, 1246
BseGI GGATG 6 cut(s) 179, 215, 240, 454, 667, 1404
BseLI CCNNNNNNNGG 1 cut(s) 1123
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 2 cut(s) 1145, 1352
BseNI ACTGG 3 cut(s) 83, 1235, 1378
BseXI GCAGC 1 cut(s) 1249
BshVI ATCGAT 1 cut(s) 1453
BsiHKCI CYCGRG 1 cut(s) 1328
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 1 cut(s) 1123
BsmAI GTCTC 3 cut(s) 375, 507, 559
BsmBI CGTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 1100
Bso31I GGTCTC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 1328
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 5 cut(s) 424, 432, 618, 1199, 1295
BspACI CCGC 1 cut(s) 1181
BspCNI CTCAG 2 cut(s) 1146, 1351
BspDI ATCGAT 1 cut(s) 1453
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 3 cut(s) 626, 1207, 1303
BspTNI GGTCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 1149
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 3 cut(s) 83, 1235, 1378
BssECI CCNNGG 2 cut(s) 204, 1246
BssMI GATC 5 cut(s) 424, 432, 618, 1199, 1295
BssNAI GTATAC 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 204, 1246
Bst1107I GTATAC 1 cut(s) 726
BstAUI TGTACA 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 1335
BstDEI CTNAG 4 cut(s) 910, 1111, 1154, 1338
BstF5I GGATG 6 cut(s) 179, 215, 240, 454, 667, 1404
BstKTI GATC 5 cut(s) 427, 435, 621, 1202, 1298
BstMAI GTCTC 3 cut(s) 375, 507, 559
BstMBI GATC 5 cut(s) 424, 432, 618, 1199, 1295
BstNSI RCATGY 1 cut(s) 1337
BstV1I GCAGC 1 cut(s) 1249
BstV2I GAAGAC 1 cut(s) 1432
BstX2I RGATCY 4 cut(s) 432, 618, 1199, 1295
BstYI RGATCY 4 cut(s) 432, 618, 1199, 1295
BstZ17I GTATAC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 1453
BsuI GTATCC 1 cut(s) 1220
BsuTUI ATCGAT 1 cut(s) 1453
BtsCI GGATG 6 cut(s) 179, 215, 240, 454, 667, 1404
BtsIMutI CAGTG 4 cut(s) 117, 1111, 1346, 1385
Cac8I GCNNGC 1 cut(s) 1335
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 1453
Csp6I GTAC 5 cut(s) 36, 89, 325, 568, 1158
CviAII CATG 9 cut(s) 222, 335, 345, 471, 668, 959, 1021, 1222, 1334
CviQI GTAC 5 cut(s) 36, 89, 325, 568, 1158
DdeI CTNAG 4 cut(s) 910, 1111, 1154, 1338
DpnI GATC 5 cut(s) 426, 434, 620, 1201, 1297
DpnII GATC 5 cut(s) 424, 432, 618, 1199, 1295
EciI GGCGGA 1 cut(s) 1170
Eco130I CCWWGG 2 cut(s) 204, 1246
Eco31I GGTCTC 1 cut(s) 507
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 960
Eco88I CYCGRG 1 cut(s) 1328
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 2 cut(s) 204, 1246
EcoT22I ATGCAT 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 204, 1246
Esp3I CGTCTC 1 cut(s) 559
FaeI CATG 9 cut(s) 225, 338, 348, 474, 671, 962, 1024, 1225, 1337
FalI AAGNNNNNCTT 4 cut(s) 685, 717, 980, 1012
FaqI GGGAC 1 cut(s) 1100
FatI CATG 9 cut(s) 221, 334, 344, 470, 667, 958, 1020, 1221, 1333
FblI GTMKAC 2 cut(s) 725, 1175
Fnu4HI GCNGC 1 cut(s) 1238
FokI GGATG 6 cut(s) 166, 202, 247, 461, 674, 1411
Fsp4HI GCNGC 1 cut(s) 1238
FspBI CTAG 5 cut(s) 741, 813, 932, 965, 1425
GluI GCNGC 1 cut(s) 1238
Hin1II CATG 9 cut(s) 225, 338, 348, 474, 671, 962, 1024, 1225, 1337
HindIII AAGCTT 2 cut(s) 853, 1262
HinfI GANTC 7 cut(s) 268, 491, 529, 602, 652, 806, 880
HphI GGTGA 3 cut(s) 35, 779, 801
Hpy166II GTNNAC 2 cut(s) 726, 1176
Hpy188I TCNGA 5 cut(s) 738, 1139, 1155, 1199, 1475
Hpy188III TCNNGA 8 cut(s) 77, 147, 265, 372, 428, 656, 932, 1328
Hpy8I GTNNAC 2 cut(s) 726, 1176
HpyAV CCTTC 3 cut(s) 20, 553, 1018
HpyCH4IV ACGT 3 cut(s) 62, 566, 585
HpyCH4V TGCA 8 cut(s) 11, 292, 398, 415, 477, 633, 639, 1087
HpyF3I CTNAG 4 cut(s) 910, 1111, 1154, 1338
HpySE526I ACGT 3 cut(s) 62, 566, 585
Hsp92II CATG 9 cut(s) 225, 338, 348, 474, 671, 962, 1024, 1225, 1337
Kzo9I GATC 5 cut(s) 424, 432, 618, 1199, 1295
LmnI GCTCC 5 cut(s) 574, 844, 1095, 1139, 1234
Lsp1109I GCAGC 1 cut(s) 1249
LweI GCATC 4 cut(s) 279, 486, 753, 1006
MaeI CTAG 5 cut(s) 741, 813, 932, 965, 1425
MaeII ACGT 3 cut(s) 62, 566, 585
MaeIII GTNAC 4 cut(s) 387, 1106, 1273, 1382
MalI GATC 5 cut(s) 426, 434, 620, 1201, 1297
MboI GATC 5 cut(s) 424, 432, 618, 1199, 1295
MboII GAAGA 8 cut(s) 65, 611, 926, 953, 956, 1025, 1363, 1432
MflI RGATCY 4 cut(s) 432, 618, 1199, 1295
MluCI AATT 6 cut(s) 187, 197, 296, 520, 871, 1044
MmeI TCCRAC 1 cut(s) 1314
Mph1103I ATGCAT 1 cut(s) 641
MseI TTAA 4 cut(s) 756, 828, 849, 1266
MslI CAYNNNNRTG 3 cut(s) 220, 469, 1380
NdeII GATC 5 cut(s) 424, 432, 618, 1199, 1295
NlaIII CATG 9 cut(s) 225, 338, 348, 474, 671, 962, 1024, 1225, 1337
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 1106, 1382
NsiI ATGCAT 1 cut(s) 641
NspI RCATGY 1 cut(s) 1337
OliI CACNNNNGTG 1 cut(s) 1380
PaeI GCATGC 1 cut(s) 1337
PaeR7I CTCGAG 1 cut(s) 1328
PcsI WCGNNNNNNNCGW 1 cut(s) 1055
PfeI GAWTC 7 cut(s) 268, 491, 529, 602, 652, 806, 880
PflFI GACNNNGTC 2 cut(s) 959, 1112
PkrI GCNGC 1 cut(s) 1239
Ppu21I YACGTR 1 cut(s) 567
PsiI TTATAA 3 cut(s) 228, 1007, 1260
Psp1406I AACGTT 2 cut(s) 62, 585
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 4 cut(s) 432, 618, 1199, 1295
PsyI GACNNNGTC 2 cut(s) 959, 1112
RsaI GTAC 5 cut(s) 37, 90, 326, 569, 1159
RsaNI GTAC 5 cut(s) 36, 89, 325, 568, 1158
RseI CAYNNNNRTG 3 cut(s) 220, 469, 1380
SaqAI TTAA 4 cut(s) 756, 828, 849, 1266
SatI GCNGC 1 cut(s) 1238
Sau3AI GATC 5 cut(s) 424, 432, 618, 1199, 1295
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 1159
SfaNI GCATC 4 cut(s) 279, 486, 753, 1006
Sfr274I CTCGAG 1 cut(s) 1328
SinI GGWCC 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 1328
SmiMI CAYNNNNRTG 3 cut(s) 220, 469, 1380
SmlI CTYRAG 4 cut(s) 320, 428, 656, 1328
SmoI CTYRAG 4 cut(s) 320, 428, 656, 1328
SphI GCATGC 1 cut(s) 1337
Sse9I AATT 6 cut(s) 187, 197, 296, 520, 871, 1044
SsiI CCGC 1 cut(s) 1181
SspI AATATT 1 cut(s) 1069
SspMI CTAG 5 cut(s) 741, 813, 932, 965, 1425
StyI CCWWGG 2 cut(s) 204, 1246
TaiI ACGT 3 cut(s) 65, 569, 588
TaqI TCGA 5 cut(s) 373, 1218, 1281, 1329, 1453
TasI AATT 6 cut(s) 187, 197, 296, 520, 871, 1044
TatI WGTACW 3 cut(s) 88, 324, 1157
TfiI GAWTC 7 cut(s) 268, 491, 529, 602, 652, 806, 880
Tru1I TTAA 4 cut(s) 756, 828, 849, 1266
Tru9I TTAA 4 cut(s) 756, 828, 849, 1266
TscAI CASTG 4 cut(s) 124, 1111, 1346, 1385
TseFI GTSAC 2 cut(s) 1106, 1382
TseI GCWGC 1 cut(s) 1237
Tsp45I GTSAC 2 cut(s) 1106, 1382
TspDTI ATGAA 9 cut(s) 210, 251, 260, 351, 465, 533, 656, 1037, 1243
TspGWI ACGGA 3 cut(s) 53, 247, 1308
TspRI CASTG 4 cut(s) 124, 1111, 1346, 1385
Tth111I GACNNNGTC 2 cut(s) 959, 1112
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 5 cut(s) 187, 197, 296, 871, 1044
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 1 cut(s) 1337
XhoI CTCGAG 1 cut(s) 1328
XmiI GTMKAC 2 cut(s) 725, 1175
XspI CTAG 5 cut(s) 741, 813, 932, 965, 1425
ZrmI AGTACT 1 cut(s) 1159
Zsp2I ATGCAT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.