Rh3DG212600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
19649309 .. 19652118
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG212600.1

Sequence Viewer

Length: 1110 bp
ATGGCGCCGAAGCCTAAGAAAAGGGCTATTGCAAGTTGTGAGGGTGGAGGAGGAGGTTGTAGTGAGAGTAAGAGCATGATAGACAGGCTTAGTGATCTTCCAGATCAGGTTGTACATCACATTCTTTCGTTTCTAACTGTGATGGACCTCGTTCGAGTGTGTTGTGTGTCCAAAAGATGGAGAGAGCTTTCTCTGTCTGCCCCGTGTTTGAATTTTGATGAGATTCCGTCGGGTTGTAGATCCACATGCCGTAACCGGCTGCAGTTGATGACTTATTTGGAGAGGTTTTTGTTTTATCGTGGGGATAATAAGATACAGTCCTTTCGTGTCAATTGGGAGCGGCACTATATGGATGAAAATGAAACTGTGTGCATCTGTGCTAGCGAGCATTATCGACTCATCACATGGATCAATAGTGCGGTGAGGTGTAATGTTGAAGTGCTTGACCTGAAGATGACTCTGTATGATCCCGAGGAGGCACCGTTTCCGTCTAGCGTCTTTCTCTGTGGAACTTTGAGGTCCCTAGCGGTGGATATGAATTTTACTCTTCTTAGAACACCCTCGTTTGGTTTTTCCTCAAATCTCACTAAGTTGGAGTTAAAAGATGTTGTGATAGAGGACGACCGGTTTTTCAAATGGGTCTCATGTTCCTGCAAGTTCATTGAGGAGTTACATCTTGATCAAGTTCGTGGAATTAAAACTATCAGTGTTGAAAGCTCGTCTCTGAAAATATTTAGGTTTTTTGATGTGTTCAACACCTCCCATCTTAGCATATCAGGTGAGAAACTTGAAGACATAGTTGTGGGCTGGTATGTTGAATCACCTAGCAACAGTTCCTTAAACATTTGTGCCCCAAATCTTAGGTGTTTGAGTTGGAGCGGGAAATTGATGAATCACCTAACTCTGGGAAAGTTCAGACATTTAGAAGCTGCTGTGCTTCGTCTAAGGCCTGATGAAAATGAATTAGACAAAGTGTATGAGGTTCTTTGCAGTTTATGCAAGGTTAGAGCTCTTATGCTGGACGAAGCAACCATTAAGGTAAAGAAAAGCAGAACCTTTCAGGCTGAGTTCTTTTGTTTTCTTTTCTTTTGTTTAAGTGGCATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

369

Amino Acids

42.32

Weight (kDa)

7.43

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 65 9.8e-10 F-box-like
F-box PF00646 30 - 66 7.2e-10 F-box domain
LRR_At1g61320_AtMIF1 PF23622 124 - 257 4.2e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 135 - 304 3.7e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 478
AccB7I CCANNNNNTGG 1 cut(s) 177
AccBSI CCGCTC 2 cut(s) 340, 879
AciI CCGC 4 cut(s) 340, 419, 527, 879
AclWI GGATC 3 cut(s) 234, 416, 461
AcsI RAATTY 2 cut(s) 211, 538
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
AgeI ACCGGT 1 cut(s) 624
AgsI TTSAA 7 cut(s) 211, 437, 634, 713, 754, 791, 818
AluBI AGCT 4 cut(s) 187, 717, 929, 1010
AluI AGCT 4 cut(s) 187, 717, 929, 1010
Alw21I GWGCWC 1 cut(s) 1012
Alw26I GTCTC 2 cut(s) 646, 726
AlwI GGATC 3 cut(s) 234, 416, 461
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 1 cut(s) 947
ApeKI GCWGC 2 cut(s) 259, 929
ApoI RAATTY 2 cut(s) 211, 538
AsiGI ACCGGT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 145, 519
AsuHPI GGTGA 4 cut(s) 433, 791, 813, 887
AsuNHI GCTAGC 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 2 cut(s) 145, 519
BaeGI GKGCMC 1 cut(s) 853
BanI GGYRCC 2 cut(s) 4, 478
BanII GRGCYC 1 cut(s) 1012
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 1012
BbvI GCAGC 2 cut(s) 246, 916
BccI CCATC 3 cut(s) 136, 171, 771
BceAI ACGGC 1 cut(s) 234
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 646, 726
BfaI CTAG 5 cut(s) 381, 492, 524, 825, 1108
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 260, 341, 930
BlsI GCNGC 3 cut(s) 261, 342, 931
Bme18I GGWCC 2 cut(s) 145, 519
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 145, 519
BmiI GGNNCC 3 cut(s) 6, 480, 521
BmsI GCATC 1 cut(s) 381
BmtI GCTAGC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 798
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
Bse118I RCCGGY 2 cut(s) 255, 624
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
BseMII CTCAG 1 cut(s) 1056
BseRI GAGGAG 4 cut(s) 63, 66, 488, 680
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 2 cut(s) 246, 916
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 1 cut(s) 949
BshNI GGYRCC 2 cut(s) 4, 478
BshTI ACCGGT 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 1012
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 2 cut(s) 256, 625
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
BsmAI GTCTC 2 cut(s) 646, 726
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 949
Bso31I GGTCTC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 853, 1012
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 6 cut(s) 94, 103, 239, 408, 466, 679
BspACI CCGC 4 cut(s) 340, 419, 527, 879
BspANI GGCC 1 cut(s) 949
BspCNI CTCAG 1 cut(s) 1057
BspLI GGNNCC 3 cut(s) 6, 480, 521
BspMAI CTGCAG 1 cut(s) 264
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 3 cut(s) 234, 416, 461
BspT107I GGYRCC 2 cut(s) 4, 478
BspTNI GGTCTC 1 cut(s) 646
BsrBI CCGCTC 2 cut(s) 340, 879
BsrFI RCCGGY 2 cut(s) 255, 624
BsrGI TGTACA 1 cut(s) 112
BssAI RCCGGY 2 cut(s) 255, 624
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 6 cut(s) 94, 103, 239, 408, 466, 679
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 5 cut(s) 139, 318, 367, 483, 833
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 996
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 382, 386
BstDEI CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1065
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 97, 106, 242, 411, 469, 682
BstMAI GTCTC 2 cut(s) 646, 726
BstMBI GATC 6 cut(s) 94, 103, 239, 408, 466, 679
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 1 cut(s) 996
BstNSI RCATGY 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 246, 916
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 949
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 382, 386
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 255, 624
Cfr13I GGNCC 2 cut(s) 145, 519
CseI GACGC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 113
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 5 cut(s) 76, 246, 405, 645, 1102
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1065
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 96, 105, 241, 410, 468, 681
DpnII GATC 6 cut(s) 94, 103, 239, 408, 466, 679
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 1010
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 1012
Eco31I GGTCTC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 145, 519
Eco53kI GAGCTC 1 cut(s) 1010
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 1012
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 5 cut(s) 79, 249, 408, 648, 1105
FaqI GGGAC 1 cut(s) 505
FatI CATG 5 cut(s) 75, 245, 404, 644, 1101
FauI CCCGC 1 cut(s) 872
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 260, 341, 930
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 1012
Fsp4HI GCNGC 3 cut(s) 260, 341, 930
FspBI CTAG 5 cut(s) 381, 492, 524, 825, 1108
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 260, 341, 930
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 949
HapII CCGG 2 cut(s) 256, 625
HgaI GACGC 1 cut(s) 484
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 79, 249, 408, 648, 1105
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 223, 396, 457, 818, 892
HpaII CCGG 2 cut(s) 256, 625
HphI GGTGA 4 cut(s) 433, 791, 813, 887
Hpy188I TCNGA 2 cut(s) 726, 917
Hpy188III TCNNGA 3 cut(s) 101, 470, 677
Hpy99I CGWCG 1 cut(s) 232
HpyCH4III ACNGT 5 cut(s) 139, 318, 367, 483, 833
HpyCH4V TGCA 6 cut(s) 32, 262, 372, 654, 990, 999
HpyF10VI GCNNNNNNNGC 1 cut(s) 996
HpyF3I CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1065
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 79, 249, 408, 648, 1105
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 6 cut(s) 94, 103, 239, 408, 466, 679
LmnI GCTCC 2 cut(s) 337, 876
Lsp1109I GCAGC 2 cut(s) 246, 916
LweI GCATC 1 cut(s) 381
MaeI CTAG 5 cut(s) 381, 492, 524, 825, 1108
MaeIII GTNAC 2 cut(s) 251, 669
MalI GATC 6 cut(s) 96, 105, 241, 410, 468, 681
MbiI CCGCTC 2 cut(s) 340, 879
MboI GATC 6 cut(s) 94, 103, 239, 408, 466, 679
MboII GAAGA 4 cut(s) 89, 463, 539, 803
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 853, 1012
MluCI AATT 6 cut(s) 211, 331, 538, 693, 884, 962
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 390, 451
MmeI TCCRAC 2 cut(s) 573, 854
MseI TTAA 5 cut(s) 599, 696, 839, 1035, 1094
MslI CAYNNNNRTG 1 cut(s) 800
MspI CCGG 2 cut(s) 256, 625
MunI CAATTG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 996
NarI GGCGCC 1 cut(s) 5
NdeII GATC 6 cut(s) 94, 103, 239, 408, 466, 679
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 5 cut(s) 79, 249, 408, 648, 1105
NlaIV GGNNCC 3 cut(s) 6, 480, 521
NspI RCATGY 1 cut(s) 249
PceI AGGCCT 1 cut(s) 949
PfeI GAWTC 3 cut(s) 223, 818, 892
PflMI CCANNNNNTGG 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 3 cut(s) 261, 342, 931
PleI GAGTC 2 cut(s) 390, 451
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 390, 451
PpuMI RGGWCCY 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 1012
Psp5II RGGWCCY 1 cut(s) 519
PspN4I GGNNCC 3 cut(s) 6, 480, 521
PspPI GGNCC 2 cut(s) 145, 519
PspPPI RGGWCCY 1 cut(s) 519
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 1 cut(s) 1012
SaqAI TTAA 5 cut(s) 599, 696, 839, 1035, 1094
SatI GCNGC 3 cut(s) 260, 341, 930
Sau3AI GATC 6 cut(s) 94, 103, 239, 408, 466, 679
Sau96I GGNCC 2 cut(s) 145, 519
SchI GAGTC 2 cut(s) 390, 451
SduI GDGCHC 2 cut(s) 853, 1012
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 145, 519
SmiMI CAYNNNNRTG 1 cut(s) 800
Sse9I AATT 6 cut(s) 211, 331, 538, 693, 884, 962
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 4 cut(s) 340, 419, 527, 879
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 732
SspMI CTAG 5 cut(s) 381, 492, 524, 825, 1108
SstI GAGCTC 1 cut(s) 1012
StuI AGGCCT 1 cut(s) 949
TaaI ACNGT 5 cut(s) 139, 318, 367, 483, 833
TaqI TCGA 2 cut(s) 154, 394
TasI AATT 6 cut(s) 211, 331, 538, 693, 884, 962
TatI WGTACW 1 cut(s) 112
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 3 cut(s) 223, 818, 892
Tru1I TTAA 5 cut(s) 599, 696, 839, 1035, 1094
Tru9I TTAA 5 cut(s) 599, 696, 839, 1035, 1094
TscAI CASTG 1 cut(s) 712
TseI GCWGC 2 cut(s) 259, 929
TspDTI ATGAA 7 cut(s) 369, 375, 551, 649, 905, 969, 975
TspGWI ACGGA 2 cut(s) 216, 477
TspRI CASTG 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 145, 519
XapI RAATTY 2 cut(s) 211, 538
XceI RCATGY 1 cut(s) 249
XspI CTAG 5 cut(s) 381, 492, 524, 825, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.