Rh3DG213200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
19713994 .. 19714862
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG213200.1

Sequence Viewer

Length: 276 bp
ATGGGATTTTGGAAGGTGCAAAGTCTTGATTTTGTTCATCAACTTAGAGAAGTAACCATTGAGCTATCCAGTGGATCCAATGGAACCGAGTTTGCGAGGTATATCCTTGAGCATGCTCAGAATTTGAACAAAATGACGATTGTGCATTCACCTCATCTGTCTAATGCTATAAGGGCGTTGAAGAAAAGCAGGATGGCTGCCAATGCCAAAGTTGTCTGTCAGGAAGATCAAAACAGAGGAACTGAAAAGCAAAGAGGAAGAAGGGTTGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

91

Amino Acids

10.39

Weight (kDa)

10.35

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 69, 82
AcsI RAATTY 1 cut(s) 121
AgsI TTSAA 2 cut(s) 127, 181
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwI GGATC 2 cut(s) 69, 82
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 187
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 76, 85
BpuEI CTTGAG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 74, 226
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 76, 85
BspPI GGATC 2 cut(s) 69, 82
BsrI ACTGG 1 cut(s) 69
BssMI GATC 2 cut(s) 74, 226
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 44, 117
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 2 cut(s) 77, 229
BstMBI GATC 2 cut(s) 74, 226
BstMWI GCNNNNNNNGC 2 cut(s) 173, 203
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 114
CviAII CATG 1 cut(s) 113
CviJI RGCY 2 cut(s) 64, 197
CviKI_1 RGCY 2 cut(s) 64, 197
DdeI CTNAG 2 cut(s) 44, 117
DpnI GATC 2 cut(s) 76, 228
DpnII GATC 2 cut(s) 74, 226
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 102, 114, 170
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 116
HphI GGTGA 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 26, 221
HpyAV CCTTC 2 cut(s) 7, 255
HpyCH4V TGCA 2 cut(s) 19, 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 203
HpyF3I CTNAG 2 cut(s) 44, 117
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 2 cut(s) 74, 226
LpnPI CCDG 3 cut(s) 82, 175, 206
Lsp1109I GCAGC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 76, 228
MboI GATC 2 cut(s) 74, 226
MboII GAAGA 3 cut(s) 193, 236, 270
MflI RGATCY 1 cut(s) 74
MluCI AATT 1 cut(s) 121
MnlI CCTC 4 cut(s) 90, 162, 230, 248
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 173, 203
NdeII GATC 2 cut(s) 74, 226
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 76, 85
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 76, 85
PsuI RGATCY 1 cut(s) 74
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 74, 226
SetI ASST 4 cut(s) 18, 66, 101, 154
SgeI CNNG 8 cut(s) 38, 81, 100, 108, 119, 125, 202, 233
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 116
Sse9I AATT 1 cut(s) 121
TasI AATT 1 cut(s) 121
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.