RLG00000023948

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000241
Physical Location & Seq
Reverse (-)
30345545 .. 30347215
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023948

Sequence Viewer

Length: 549 bp
ATGGCTACTGCAAGTTCTGAAGGAGAAGGAGGTTGTACGGAGAGTGAGAATATGATAGGAACGTTGGGTAATCTTCCAGACCCAGTTGTGCTTCACATTGAACTATACAAGAGAGGAATTTCGCCAACTTCGTTTGGTAATATTTGTTATTTGCGTATGCATATTGGGAGCTTCGTCGGTGACCTAGTCCCATCGATGGTGTTTCTTTTCGGAGCAATGATAAATCTGAGTACTTTATACATCAAGTCTACTCCGCCTTTATACGACTTCGGATCTAATACATCTGGTTTCAATATGGCATACTGGGAGCGGCAAAACCTTGGTTTCATTGATAAGCTTAAAGAGGTTACGATCGAGCTTTCCTTCGGATCTAATGGAATGGAGTTAGCAAGATATATTCTCGAGCATGCTCAGTGTTTGGAGAAGATGGTCGTAGTTTATCTACCCCACCAGTGTGATATTGTTAAAAGGATGTTAGATAGAAGCAAGATGATTTCTAGTGGCATAGTTGTCTGCAAGGAAAATGGATGTAAAAGAAAGCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

183

Amino Acids

20.22

Weight (kDa)

6.42

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 125 - 144 8.2e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 254, 310
AclI AACGTT 1 cut(s) 62
AclWI GGATC 2 cut(s) 280, 376
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 37, 232
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 101, 292
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 4 cut(s) 171, 337, 358, 541
AluI AGCT 4 cut(s) 171, 337, 358, 541
AlwI GGATC 2 cut(s) 280, 376
Ama87I CYCGRG 1 cut(s) 401
ApoI RAATTY 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 401
BccI CCATC 3 cut(s) 190, 199, 421
BfaI CTAG 2 cut(s) 185, 498
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 401
BmrI ACTGGG 2 cut(s) 77, 313
BmuI ACTGGG 2 cut(s) 77, 313
Bsa29I ATCGAT 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 83, 308, 451
Bse3DI GCAATG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 477, 533
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 218, 425
BseNI ACTGG 3 cut(s) 83, 308, 451
Bsh1285I CGRYCG 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 401
Bsp143I GATC 3 cut(s) 272, 351, 368
BspACI CCGC 2 cut(s) 254, 310
BspCNI CTCAG 2 cut(s) 219, 424
BspDI ATCGAT 1 cut(s) 194
BspPI GGATC 2 cut(s) 280, 376
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 3 cut(s) 83, 308, 451
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 272, 351, 368
BssT1I CCWWGG 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 227, 411
BstEII GGTNACC 1 cut(s) 179
BstF5I GGATG 2 cut(s) 477, 533
BstKTI GATC 3 cut(s) 275, 354, 371
BstMBI GATC 3 cut(s) 272, 351, 368
BstMCI CGRYCG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 272, 368
BstYI RGATCY 2 cut(s) 272, 368
Bsu15I ATCGAT 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 194
BtsCI GGATG 2 cut(s) 477, 533
BtsIMutI CAGTG 2 cut(s) 419, 458
Cac8I GCNNGC 1 cut(s) 408
ClaI ATCGAT 1 cut(s) 194
Csp6I GTAC 2 cut(s) 36, 231
CviAII CATG 1 cut(s) 407
CviJI RGCY 5 cut(s) 5, 171, 337, 358, 541
CviKI_1 RGCY 5 cut(s) 5, 171, 337, 358, 541
CviQI GTAC 2 cut(s) 36, 231
DdeI CTNAG 2 cut(s) 227, 411
DpnI GATC 3 cut(s) 274, 353, 370
DpnII GATC 3 cut(s) 272, 351, 368
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 1 cut(s) 410
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 2 cut(s) 484, 540
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 2 cut(s) 185, 498
GluI GCNGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 410
HindIII AAGCTT 1 cut(s) 335
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 6 cut(s) 19, 212, 228, 272, 368, 548
Hpy188III TCNNGA 2 cut(s) 77, 401
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 14, 20, 373
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 11, 160, 516
HpyF3I CTNAG 2 cut(s) 227, 411
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 410
Kzo9I GATC 3 cut(s) 272, 351, 368
LmnI GCTCC 3 cut(s) 168, 212, 307
LpnPI CCDG 6 cut(s) 90, 96, 270, 289, 464, 527
MaeI CTAG 2 cut(s) 185, 498
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 179, 346
MalI GATC 3 cut(s) 274, 353, 370
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 272, 351, 368
MboII GAAGA 2 cut(s) 65, 436
MflI RGATCY 2 cut(s) 272, 368
MluCI AATT 1 cut(s) 117
MnlI CCTC 3 cut(s) 23, 107, 337
Mph1103I ATGCAT 1 cut(s) 162
MseI TTAA 2 cut(s) 339, 465
MslI CAYNNNNRTG 1 cut(s) 453
NdeII GATC 3 cut(s) 272, 351, 368
NlaIII CATG 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 453
PaeI GCATGC 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 312
Ple19I CGATCG 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 272, 368
PsyI GACNNNGTC 1 cut(s) 185
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 2 cut(s) 37, 232
RsaNI GTAC 2 cut(s) 36, 231
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 2 cut(s) 339, 465
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 3 cut(s) 272, 351, 368
ScaI AGTACT 1 cut(s) 232
SetI ASST 9 cut(s) 34, 65, 173, 186, 321, 339, 348, 360, 543
Sfr274I CTCGAG 1 cut(s) 401
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 410
Sse9I AATT 1 cut(s) 117
SsiI CCGC 2 cut(s) 254, 310
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 185, 498
StyI CCWWGG 1 cut(s) 319
TaiI ACGT 1 cut(s) 65
TaqI TCGA 3 cut(s) 194, 354, 402
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 339, 465
Tru9I TTAA 2 cut(s) 339, 465
TscAI CASTG 2 cut(s) 419, 458
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 419, 458
Tth111I GACNNNGTC 1 cut(s) 185
XapI RAATTY 1 cut(s) 117
XceI RCATGY 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 2 cut(s) 185, 498
ZrmI AGTACT 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.