Rw3G017210

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000241
Physical Location & Seq
Forward (+)
18640188 .. 18642064
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017210.1

Sequence Viewer

Length: 1449 bp
ATGGAACACAAGGGTAAGTTATTGGCTGGTGGAAATGGTGAGACTGACAGGTTTAGCAATCTTCCCAAGGAAGTCCTTGATAAGATTCTTTCACGTCTTCTGATTAACGACCTGGCTCGCCTCTGCTGCGTGTCCAAAACATGCAAAGATATGTCTCTGTCCGCTCCGTCTGTGAGCATTTGTGGATTTGGTGTAGATGAAATAGCGGAGATGCCGTGTGAAGTTCGGTTGAAACTGGTGAATGCATTGGATAGGTTCTTGCTTAGTCGTGGGGATAATGAGATGCGGAAATTTACTCTTGTTTGGGAGGGCCATCATGAGGACGAGGTCGAGGAACCGCCATGCTTCTGTGTTAATGAGAGTTTCCGAATGATCACCTGGATTCAGAATGCACTGAGGTGTAATGTTGAAAAGCTTTTTATTGATGTGACCTTTTATGATTGTGATGGGGAACTTTTAGCATTTCCGTCTTGCGTCTTTAATTGTGCATCTTTGAGGTCTCTAGTGGTAGAAATGTCATTTACGGTTGTTAAAACACCCTCATTTACGTTCTCATCTAATCTTGAGACCTTGGCATTGAGCGATGTTGATATTGCAGACGAGGGGTTTTTCAAGTGGATATCATGTTCGTGCAAGCTCCTTAAGGAATTGCGTCTTGCAGGACTTAATGGGATAGATAATATCACCATTGAAAGCTTGTCTTTGGAAAAATTTAGTTATATTCATTTCGAGGTGTATGAAACCTGTCATATTAACATTTCTGGTGAGAAGCTTGAAGAAATACATATTAACTGCAGTCATTCACCTAGAAGCACCGTGTTGAACATTATTGCTCCAAATGTCAAATCTTTGAGGTTGGAGGGAAATGTGAAAAATAACCTGAATCTGGGAGACTTAAATTGTTTAGAACAAGCTTCTATTCTTATGGAGCCCATAGTAGATGAGTTCGACAAAGTATATGATGTTCTTTCCAGTTTGTGCAGTGTGGAAGTCCTTGTCCTAAATGAAGCTACCATCAAGGTAAAAGTGAACCAGAACCCCTATTTGGTATTACAAATGAATATTGGTAGCTTTACTGATGATCTAGTCCCAGCAGTCGTCTCTCTCTTAAGAGGAACACCAAATTTGTGTACCTTATACATGTGTTATAAACCAACTTCACTTGACCCTCAATCTAATACGTCTGGGTTTGATATGGAGTATTGGAAGAAGCAAAACCTGGATTTTATGTCTCAGGTTCAGGACGTTACCATAGAGCTCAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATGTACTTGAGCATGCGGAGAGCCTGGAGAAAATGGTCATTAGGTATTTAACCCGTGAATCTAATGTTAGACGGAAGTTAAAAAATAGTAACATGATCTCCAATGCCACAGTTACTTTTGAGAAATACGAAAGTTCAGTTAACCCATTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

482

Amino Acids

54.45

Weight (kDa)

4.95

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 53 1.5e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 122 - 452 1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 126 - 284 4.3e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 5 cut(s) 162, 206, 286, 338, 1310
AcsI RAATTY 3 cut(s) 290, 710, 1123
AfaI GTAC 2 cut(s) 1132, 1299
AfiI CCNNNNNNNGG 3 cut(s) 319, 886, 1045
AflII CTTAAG 2 cut(s) 641, 1108
AflIII ACRYGT 1 cut(s) 1140
AgsI TTSAA 6 cut(s) 232, 410, 613, 692, 776, 823
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 4 cut(s) 111, 377, 1218, 1317
AjuI GAANNNNNNNTTGG 2 cut(s) 1028, 1060
AleI CACNNNNGTG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
AluBI AGCT 8 cut(s) 415, 637, 696, 772, 914, 1010, 1071, 1258
AluI AGCT 8 cut(s) 415, 637, 696, 772, 914, 1010, 1071, 1258
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 7 cut(s) 35, 159, 504, 560, 885, 1105, 1236
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 3 cut(s) 290, 710, 1123
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 6 cut(s) 50, 250, 367, 676, 776, 795
BanII GRGCYC 2 cut(s) 933, 1260
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 1 cut(s) 113
BccI CCATC 3 cut(s) 321, 440, 1022
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 4 cut(s) 113, 379, 1220, 1319
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 7 cut(s) 35, 159, 504, 560, 885, 1105, 1236
BfaI CTAG 3 cut(s) 503, 807, 1085
BfmI CTRYAG 1 cut(s) 793
BfrI CTTAAG 2 cut(s) 641, 1108
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 4 cut(s) 113, 379, 1220, 1319
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 336, 930
BmrFI CCNGG 4 cut(s) 113, 379, 1220, 1319
BmsI GCATC 3 cut(s) 201, 273, 497
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 1340
BpuEI CTTGAG 2 cut(s) 584, 1322
BsaI GGTCTC 2 cut(s) 504, 560
BsaJI CCNNGG 2 cut(s) 66, 570
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 1376, 1406
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 886, 1045
Bse1I ACTGG 2 cut(s) 240, 972
BseBI CCWGG 4 cut(s) 113, 379, 1220, 1319
BseDI CCNNGG 2 cut(s) 66, 570
BseLI CCNNNNNNNGG 3 cut(s) 319, 886, 1045
BseMII CTCAG 3 cut(s) 386, 1247, 1273
BseNI ACTGG 2 cut(s) 240, 972
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 2 cut(s) 1090, 1265
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 1260
BslFI GGGAC 1 cut(s) 1073
BslI CCNNNNNNNGG 3 cut(s) 319, 886, 1045
BsmAI GTCTC 7 cut(s) 35, 159, 504, 560, 885, 1105, 1236
BsmBI CGTCTC 1 cut(s) 1105
BsmFI GGGAC 1 cut(s) 1073
BsmI GAATGC 2 cut(s) 247, 394
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 2 cut(s) 504, 560
Bsp1286I GDGCHC 2 cut(s) 933, 1260
Bsp143I GATC 3 cut(s) 372, 1081, 1389
BspACI CCGC 5 cut(s) 162, 206, 286, 338, 1310
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 3 cut(s) 387, 1246, 1272
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 336, 930
BspMAI CTGCAG 1 cut(s) 797
BspTI CTTAAG 2 cut(s) 641, 1108
BspTNI GGTCTC 2 cut(s) 504, 560
BsrBI CCGCTC 1 cut(s) 164
BsrI ACTGG 2 cut(s) 240, 972
BssECI CCNNGG 2 cut(s) 66, 570
BssMI GATC 3 cut(s) 372, 1081, 1389
BssT1I CCWWGG 2 cut(s) 66, 570
Bst2UI CCWGG 4 cut(s) 113, 379, 1220, 1319
Bst4CI ACNGT 3 cut(s) 526, 817, 1405
BstAFI CTTAAG 2 cut(s) 641, 1108
BstC8I GCNNGC 3 cut(s) 118, 635, 1308
BstDEI CTNAG 4 cut(s) 263, 395, 1233, 1259
BstKTI GATC 3 cut(s) 375, 1084, 1392
BstMAI GTCTC 7 cut(s) 35, 159, 504, 560, 885, 1105, 1236
BstMBI GATC 3 cut(s) 372, 1081, 1389
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 4 cut(s) 113, 379, 1220, 1319
BstNSI RCATGY 3 cut(s) 144, 1144, 1310
BstSCI CCNGG 4 cut(s) 111, 377, 1218, 1317
BstSFI CTRYAG 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 3 cut(s) 392, 988, 1267
Cac8I GCNNGC 3 cut(s) 118, 635, 1308
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 2 cut(s) 463, 641
Csp6I GTAC 2 cut(s) 1131, 1298
CviAII CATG 7 cut(s) 141, 317, 342, 624, 1141, 1307, 1387
CviQI GTAC 2 cut(s) 1131, 1298
DdeI CTNAG 4 cut(s) 263, 395, 1233, 1259
DpnI GATC 3 cut(s) 374, 1083, 1391
DpnII GATC 3 cut(s) 372, 1081, 1389
Ecl136II GAGCTC 1 cut(s) 1258
Eco130I CCWWGG 2 cut(s) 66, 570
Eco24I GRGCYC 2 cut(s) 933, 1260
Eco31I GGTCTC 2 cut(s) 504, 560
Eco32I GATATC 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 1258
EcoICRI GAGCTC 1 cut(s) 1258
EcoRII CCWGG 4 cut(s) 111, 377, 1218, 1317
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 66, 570
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 933, 1260
ErhI CCWWGG 2 cut(s) 66, 570
Esp3I CGTCTC 1 cut(s) 1105
FaeI CATG 7 cut(s) 144, 320, 345, 627, 1144, 1310, 1390
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 1 cut(s) 1073
FatI CATG 7 cut(s) 140, 316, 341, 623, 1140, 1306, 1386
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 127
FriOI GRGCYC 2 cut(s) 933, 1260
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 3 cut(s) 503, 807, 1085
GluI GCNGC 1 cut(s) 127
GsaI CCCAGC 2 cut(s) 1094, 1269
GsuI CTGGAG 1 cut(s) 1340
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 2 cut(s) 463, 641
Hin1II CATG 7 cut(s) 144, 320, 345, 627, 1144, 1310, 1390
HincII GTYRAC 1 cut(s) 1435
HindII GTYRAC 1 cut(s) 1435
HindIII AAGCTT 4 cut(s) 413, 694, 770, 912
HinfI GANTC 4 cut(s) 85, 382, 883, 1352
HpaI GTTAAC 1 cut(s) 1435
HphI GGTGA 6 cut(s) 50, 250, 367, 676, 776, 795
Hpy166II GTNNAC 3 cut(s) 1030, 1131, 1435
Hpy188I TCNGA 3 cut(s) 102, 368, 387
Hpy188III TCNNGA 3 cut(s) 317, 563, 1241
Hpy8I GTNNAC 3 cut(s) 1030, 1131, 1435
HpyCH4III ACNGT 3 cut(s) 526, 817, 1405
HpyCH4IV ACGT 4 cut(s) 94, 548, 1181, 1245
HpyCH4V TGCA 9 cut(s) 144, 245, 392, 488, 596, 633, 659, 795, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 4 cut(s) 263, 395, 1233, 1259
HpySE526I ACGT 4 cut(s) 94, 548, 1181, 1245
Hsp92II CATG 7 cut(s) 144, 320, 345, 627, 1144, 1310, 1390
Ksp22I TGATCA 1 cut(s) 372
KspAI GTTAAC 1 cut(s) 1435
Kzo9I GATC 3 cut(s) 372, 1081, 1389
LmnI GCTCC 4 cut(s) 169, 642, 838, 928
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 3 cut(s) 201, 273, 497
MaeI CTAG 3 cut(s) 503, 807, 1085
MaeII ACGT 4 cut(s) 94, 548, 1181, 1245
MaeIII GTNAC 4 cut(s) 427, 1246, 1382, 1405
MalI GATC 3 cut(s) 374, 1083, 1391
MbiI CCGCTC 1 cut(s) 164
MboI GATC 3 cut(s) 372, 1081, 1389
MboII GAAGA 4 cut(s) 53, 89, 788, 1219
MhlI GDGCHC 2 cut(s) 933, 1260
MluCI AATT 7 cut(s) 290, 481, 647, 710, 898, 1123, 1278
MmeI TCCRAC 1 cut(s) 837
Mph1103I ATGCAT 1 cut(s) 247
MslI CAYNNNNRTG 2 cut(s) 397, 628
MspCI CTTAAG 2 cut(s) 641, 1108
MspR9I CCNGG 4 cut(s) 113, 379, 1220, 1319
Mva1269I GAATGC 2 cut(s) 247, 394
MvaI CCWGG 4 cut(s) 113, 379, 1220, 1319
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 3 cut(s) 372, 1081, 1389
NlaIII CATG 7 cut(s) 144, 320, 345, 627, 1144, 1310, 1390
NlaIV GGNNCC 2 cut(s) 336, 930
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 3 cut(s) 144, 1144, 1310
OliI CACNNNNGTG 1 cut(s) 397
PaeI GCATGC 1 cut(s) 1310
PagI TCATGA 1 cut(s) 316
PciI ACATGT 1 cut(s) 1140
PctI GAATGC 2 cut(s) 247, 394
PfeI GAWTC 4 cut(s) 85, 382, 883, 1352
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 128
PscI ACATGT 1 cut(s) 1140
PsiI TTATAA 1 cut(s) 1149
Psp124BI GAGCTC 1 cut(s) 1260
Psp6I CCWGG 4 cut(s) 111, 377, 1218, 1317
PspFI CCCAGC 2 cut(s) 1090, 1265
PspGI CCWGG 4 cut(s) 111, 377, 1218, 1317
PspN4I GGNNCC 2 cut(s) 336, 930
PspPI GGNCC 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 948, 980
PstI CTGCAG 1 cut(s) 797
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 2 cut(s) 1132, 1299
RsaNI GTAC 2 cut(s) 1131, 1298
RseI CAYNNNNRTG 2 cut(s) 397, 628
SacI GAGCTC 1 cut(s) 1260
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 3 cut(s) 372, 1081, 1389
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 4 cut(s) 113, 379, 1220, 1319
SduI GDGCHC 2 cut(s) 933, 1260
SfaNI GCATC 3 cut(s) 201, 273, 497
SfcI CTRYAG 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 397, 628
SmlI CTYRAG 4 cut(s) 563, 641, 1108, 1301
SmoI CTYRAG 4 cut(s) 563, 641, 1108, 1301
SphI GCATGC 1 cut(s) 1310
Sse9I AATT 7 cut(s) 290, 481, 647, 710, 898, 1123, 1278
SsiI CCGC 5 cut(s) 162, 206, 286, 338, 1310
SspI AATATT 1 cut(s) 1063
SspMI CTAG 3 cut(s) 503, 807, 1085
SstI GAGCTC 1 cut(s) 1260
StyD4I CCNGG 4 cut(s) 111, 377, 1218, 1317
StyI CCWWGG 2 cut(s) 66, 570
TaaI ACNGT 3 cut(s) 526, 817, 1405
TaiI ACGT 4 cut(s) 97, 551, 1184, 1248
TaqI TCGA 3 cut(s) 330, 729, 948
TasI AATT 7 cut(s) 290, 481, 647, 710, 898, 1123, 1278
TatI WGTACW 1 cut(s) 1297
TfiI GAWTC 4 cut(s) 85, 382, 883, 1352
TscAI CASTG 3 cut(s) 399, 988, 1267
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 5 cut(s) 213, 713, 753, 1020, 1073
TspGWI ACGGA 3 cut(s) 156, 456, 1381
TspRI CASTG 3 cut(s) 399, 988, 1267
Tth111I GACNNNGTC 1 cut(s) 326
Vha464I CTTAAG 2 cut(s) 641, 1108
XapI RAATTY 3 cut(s) 290, 710, 1123
XceI RCATGY 3 cut(s) 144, 1144, 1310
XspI CTAG 3 cut(s) 503, 807, 1085
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.