RchiOBHm_Chr3g0474191

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000241
Physical Location & Seq
Forward (+)
19901783 .. 19903442
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43983

Sequence Viewer

Length: 1356 bp
ATGGCTAACGCAAGTTGTGAAGCTGAAGGAGGAGGTTGTCTTAAGGATGAGATTATGGTAGGAAGATTTGTTAATCTTCCGGATCAAGTTGTGCATCACATCGTTTCTTTCCTAGCTATCACTGACCTCACTCGTTTCGGCTGTGTGTCCAAGAAGTGTAGAGAACTTTATCTAACAAGTCCATCCTTGAAGTTTGATGAATTTTCCTTGGCTAACACATCCTCATGTTATAAACGGATGAATTTGTTGAGGTCTTTGGATAAGTTCTTGATTCATCGTGGGGAGAATAAGATACACCAATTTTGTATTCGTTGGGTTCCCCCCGAGAACTTTGACCATGAAACACCATGCTTTTGTGGTTGTAATGAGAAGTCTGGAATGATGGCTTGGATACACTATGCAGTAAGGTGTAAAGTGGAAGTGCTTGATCTTGAGATCTCTATATTTGAGAAGGCGATGCCATTAGCATTTCCATTTTTCATCCTTCAGTGTAAATCTTTGAGGTCTGTATCGCTGGACATGAATTGTATGATTCATACACCCTCTTTCACCGTTTTCTCTAGTCTCAAGTGCTTGGAGCTGAAAAATGTTAGAATATTGAATGAGTCATTTTTCAAATGGATCTCAAATTCCTGCAAATGCATTGAGGAATTAGATCTTGATGATGTCCATGGAATTAGAAATATCAACATTGAGAGCCCTTCTTTGAAATCATTTAAATTTGGGTCTTGCAATCAGACTCGCTTCTGTCATCTTAAAATCTCTGGTGAGAAACTCATATCCATATTTGTCTACTGGAGTTTTTATTCATCTCTCAACAAATCGTTTAGTCTTTCTGCTCCGAATCTAGAAAGATTTTATTGGTTTGGGAATTTGTTGGATCACTCAAATCTCGGAGAAACGGGACTGTATAAGAGAGGAATCATACCACCTCTGTTTCGTAATACTTGTTATTTGTGTATGCATATTGGCAGCTTTGTTAATGACCTAGTCCCATGGATGGTCTTTCTTTTCCGAAGAATGCCTAATTTGTGTACCTTGTACATCAAGTCTACTCCACCTCTATCTGACTGCAATTCTCATCATACATGCGGGTTCTATATGGAATACTGGAAGCAGCAAAACTTCGGTTTTATACTTGAGCTTAATGAGGTTACCATTGAGCTTTCCAGAGGACTAAATGGAATTGAGATAGCAAGGTATATGCTCGAGCATGCTCAGAATTTGAAGAAAATGGTCATAGTTTGTTTACCGCAGCAGTCTGGTTTTGTTAAAAGGATGTTAGATAAAAGTAAGATGATTTCGAATGGCACAGTTGTGTTCAAGGAAAATCGACAAGAGAGAAAGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

451

Amino Acids

52.15

Weight (kDa)

8.59

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 124 - 248 4e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 129 - 245 7.2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 2 cut(s) 792, 1052
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 2 cut(s) 1092, 1253
AclWI GGATC 3 cut(s) 90, 629, 888
AcsI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1222
AcuI CTGAAG 2 cut(s) 45, 470
AfaI GTAC 2 cut(s) 1036, 1043
AfiI CCNNNNNNNGG 1 cut(s) 1000
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 190, 601, 616, 709, 1228, 1324
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 370, 402
AleI CACNNNNGTG 1 cut(s) 1316
AluBI AGCT 7 cut(s) 23, 116, 580, 975, 1144, 1165, 1348
AluI AGCT 7 cut(s) 23, 116, 580, 975, 1144, 1165, 1348
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 3 cut(s) 90, 629, 888
Ama87I CYCGRG 2 cut(s) 323, 1208
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 972, 1117, 1255
ApoI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1222
AsuHPI GGTGA 2 cut(s) 541, 779
AsuII TTCGAA 1 cut(s) 1304
AvaI CYCGRG 2 cut(s) 323, 1208
BanII GRGCYC 1 cut(s) 701
BbvI GCAGC 3 cut(s) 984, 1129, 1267
BccI CCATC 3 cut(s) 190, 376, 994
BciVI GTATCC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 4 cut(s) 113, 561, 848, 989
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 2 cut(s) 435, 655
BisI GCNGC 3 cut(s) 973, 1118, 1256
BlsI GCNGC 3 cut(s) 974, 1119, 1257
BmeT110I CYCGRG 2 cut(s) 323, 1208
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 2 cut(s) 103, 447
BpmI CTGGAG 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 1304
BpuEI CTTGAG 3 cut(s) 452, 551, 1160
BsaJI CCNNGG 3 cut(s) 207, 670, 995
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse1I ACTGG 2 cut(s) 800, 1115
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 207, 670, 995
BseGI GGATG 7 cut(s) 52, 182, 218, 243, 480, 1005, 1284
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMII CTCAG 1 cut(s) 1232
BseNI ACTGG 2 cut(s) 800, 1115
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 984, 1129, 1267
BsiHKCI CYCGRG 2 cut(s) 323, 1208
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 2 cut(s) 918, 977
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 918, 977
BsmI GAATGC 1 cut(s) 1026
BsoBI CYCGRG 2 cut(s) 323, 1208
Bsp119I TTCGAA 1 cut(s) 1304
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 6 cut(s) 82, 427, 435, 621, 655, 880
Bsp19I CCATGG 2 cut(s) 670, 995
BspACI CCGC 2 cut(s) 1092, 1253
BspCNI CTCAG 1 cut(s) 1231
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 3 cut(s) 90, 629, 888
BspT104I TTCGAA 1 cut(s) 1304
BspTI CTTAAG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 1041
BsrI ACTGG 2 cut(s) 800, 1115
BssECI CCNNGG 3 cut(s) 207, 670, 995
BssMI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
BssT1I CCWWGG 3 cut(s) 207, 670, 995
Bst4CI ACNGT 3 cut(s) 553, 909, 1315
BstAFI CTTAAG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 1041
BstBI TTCGAA 1 cut(s) 1304
BstC8I GCNNGC 1 cut(s) 1215
BstDEI CTNAG 1 cut(s) 1218
BstDSI CCRYGG 2 cut(s) 670, 995
BstEII GGTNACC 1 cut(s) 1153
BstF5I GGATG 7 cut(s) 52, 182, 218, 243, 480, 1005, 1284
BstKTI GATC 6 cut(s) 85, 430, 438, 624, 658, 883
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
BstNSI RCATGY 2 cut(s) 1092, 1217
BstPI GGTNACC 1 cut(s) 1153
BstV1I GCAGC 3 cut(s) 984, 1129, 1267
BstX2I RGATCY 3 cut(s) 435, 621, 655
BstYI RGATCY 3 cut(s) 435, 621, 655
BsuI GTATCC 1 cut(s) 384
BtgI CCRYGG 2 cut(s) 670, 995
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 7 cut(s) 52, 182, 218, 243, 480, 1005, 1284
BtsIMutI CAGTG 2 cut(s) 120, 494
Cac8I GCNNGC 1 cut(s) 1215
Csp6I GTAC 2 cut(s) 1035, 1042
CviAII CATG 8 cut(s) 225, 338, 348, 520, 671, 996, 1089, 1214
CviQI GTAC 2 cut(s) 1035, 1042
DdeI CTNAG 1 cut(s) 1218
DpnI GATC 6 cut(s) 84, 429, 437, 623, 657, 882
DpnII GATC 6 cut(s) 82, 427, 435, 621, 655, 880
DraI TTTAAA 1 cut(s) 718
Eco130I CCWWGG 3 cut(s) 207, 670, 995
Eco24I GRGCYC 1 cut(s) 701
Eco57I CTGAAG 2 cut(s) 45, 470
Eco88I CYCGRG 2 cut(s) 323, 1208
Eco91I GGTNACC 1 cut(s) 1153
EcoO65I GGTNACC 1 cut(s) 1153
EcoT14I CCWWGG 3 cut(s) 207, 670, 995
EcoT22I ATGCAT 2 cut(s) 644, 966
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 3 cut(s) 207, 670, 995
FaeI CATG 8 cut(s) 228, 341, 351, 523, 674, 999, 1092, 1217
FaqI GGGAC 2 cut(s) 918, 977
FatI CATG 8 cut(s) 224, 337, 347, 519, 670, 995, 1088, 1213
FauI CCCGC 1 cut(s) 1085
FblI GTMKAC 2 cut(s) 792, 1052
Fnu4HI GCNGC 3 cut(s) 973, 1118, 1256
FokI GGATG 7 cut(s) 59, 169, 205, 250, 467, 1012, 1291
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 3 cut(s) 973, 1118, 1256
FspBI CTAG 4 cut(s) 113, 561, 848, 989
GluI GCNGC 3 cut(s) 973, 1118, 1256
GsuI CTGGAG 1 cut(s) 817
HapII CCGG 1 cut(s) 80
Hin1II CATG 8 cut(s) 228, 341, 351, 523, 674, 999, 1092, 1217
HinfI GANTC 6 cut(s) 271, 532, 605, 739, 844, 921
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 541, 779
Hpy166II GTNNAC 4 cut(s) 793, 1035, 1053, 1250
Hpy188I TCNGA 6 cut(s) 738, 843, 896, 1016, 1069, 1221
Hpy188III TCNNGA 7 cut(s) 80, 268, 375, 431, 659, 848, 1170
Hpy8I GTNNAC 4 cut(s) 793, 1035, 1053, 1250
HpyAV CCTTC 4 cut(s) 20, 445, 494, 711
HpyCH4III ACNGT 3 cut(s) 553, 909, 1315
HpyCH4V TGCA 7 cut(s) 94, 401, 636, 642, 732, 964, 1074
HpyF3I CTNAG 1 cut(s) 1218
Hsp92II CATG 8 cut(s) 228, 341, 351, 523, 674, 999, 1092, 1217
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 6 cut(s) 82, 427, 435, 621, 655, 880
LmnI GCTCC 2 cut(s) 577, 844
Lsp1109I GCAGC 3 cut(s) 984, 1129, 1267
LweI GCATC 2 cut(s) 103, 447
MaeI CTAG 4 cut(s) 113, 561, 848, 989
MaeIII GTNAC 1 cut(s) 1153
MalI GATC 6 cut(s) 84, 429, 437, 623, 657, 882
MboI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
MboII GAAGA 4 cut(s) 68, 75, 1029, 1240
MflI RGATCY 3 cut(s) 435, 621, 655
MhlI GDGCHC 1 cut(s) 701
MlyI GAGTC 2 cut(s) 614, 733
MmeI TCCRAC 1 cut(s) 858
Mph1103I ATGCAT 2 cut(s) 644, 966
MroI TCCGGA 1 cut(s) 79
MseI TTAA 7 cut(s) 42, 72, 717, 756, 981, 1146, 1272
MslI CAYNNNNRTG 2 cut(s) 223, 1316
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 1026
NcoI CCATGG 2 cut(s) 670, 995
NdeII GATC 6 cut(s) 82, 427, 435, 621, 655, 880
NlaIII CATG 8 cut(s) 228, 341, 351, 523, 674, 999, 1092, 1217
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 2 cut(s) 644, 966
NspI RCATGY 2 cut(s) 1092, 1217
NspV TTCGAA 1 cut(s) 1304
OliI CACNNNNGTG 1 cut(s) 1316
PaeI GCATGC 1 cut(s) 1217
PaeR7I CTCGAG 1 cut(s) 1208
PctI GAATGC 1 cut(s) 1026
PfeI GAWTC 4 cut(s) 271, 532, 844, 921
PflFI GACNNNGTC 1 cut(s) 989
PkrI GCNGC 3 cut(s) 974, 1119, 1257
PleI GAGTC 2 cut(s) 613, 733
PpsI GAGTC 2 cut(s) 613, 733
PsiI TTATAA 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 1153
PspN4I GGNNCC 1 cut(s) 318
PspXI VCTCGAGB 1 cut(s) 1208
PsuI RGATCY 3 cut(s) 435, 621, 655
PsyI GACNNNGTC 1 cut(s) 989
RsaI GTAC 2 cut(s) 1036, 1043
RsaNI GTAC 2 cut(s) 1035, 1042
RseI CAYNNNNRTG 2 cut(s) 223, 1316
SaqAI TTAA 7 cut(s) 42, 72, 717, 756, 981, 1146, 1272
SatI GCNGC 3 cut(s) 973, 1118, 1256
Sau3AI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
SchI GAGTC 2 cut(s) 614, 733
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 103, 447
Sfr274I CTCGAG 1 cut(s) 1208
SfuI TTCGAA 1 cut(s) 1304
SlaI CTCGAG 1 cut(s) 1208
SmiI ATTTAAAT 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 223, 1316
SmlI CTYRAG 5 cut(s) 41, 431, 566, 1139, 1208
SmoI CTYRAG 5 cut(s) 41, 431, 566, 1139, 1208
SphI GCATGC 1 cut(s) 1217
SsiI CCGC 2 cut(s) 1092, 1253
SspI AATATT 1 cut(s) 597
SspMI CTAG 4 cut(s) 113, 561, 848, 989
StyI CCWWGG 3 cut(s) 207, 670, 995
SwaI ATTTAAAT 1 cut(s) 718
TaaI ACNGT 3 cut(s) 553, 909, 1315
TaqI TCGA 3 cut(s) 1209, 1304, 1333
TatI WGTACW 1 cut(s) 1041
TfiI GAWTC 4 cut(s) 271, 532, 844, 921
Tru1I TTAA 7 cut(s) 42, 72, 717, 756, 981, 1146, 1272
Tru9I TTAA 7 cut(s) 42, 72, 717, 756, 981, 1146, 1272
TscAI CASTG 2 cut(s) 127, 494
TseI GCWGC 3 cut(s) 972, 1117, 1255
TspDTI ATGAA 8 cut(s) 213, 254, 263, 354, 469, 524, 536, 798
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 127, 494
Tth111I GACNNNGTC 1 cut(s) 989
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1222
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 1092, 1217
XhoI CTCGAG 1 cut(s) 1208
XmiI GTMKAC 2 cut(s) 792, 1052
XspI CTAG 4 cut(s) 113, 561, 848, 989
Zsp2I ATGCAT 2 cut(s) 644, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.