Prupe.7G105600_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000241
Physical Location & Seq
Reverse (-)
13452400 .. 13454019
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G105600.1

Sequence Viewer

Length: 918 bp
ATGGATGGATTTAGTAACCTTCCAGACCAAGTTGCCCATTACATTCTTTCCTTCCTTACTATAACAGACCTTGCTCGTTTCGGCTGTGCGTCGAAACGATGCAGAGAACTTTATCTGTCAGCCCCATCGTTGAATTTTGATGGATTTTCCGTCGCGAATCAATCCACGTGTATGAAGCGGCAAAGGACAGAGTCATGTATTTATCAAATACAGACGAGGATACCGACTATAGCAAGGATAGCGACATTGTTATTAAAAATTGTGCATTTTCGAGTAATGTCATGGGTCCACAATGCAGTAAGGTGCAATGTGGAAGAGCTTGATCTTGACATCAGCCCTGGAAGTGAGATAGCTCCGAAGTTTCCATCTCATGTTTTTCTTTGTGCATCCTTGACATCTCTATCGGTGGACGTGGGCTGTACGAGTCTTACCGTGCCCTCCTTCACATTTTCCTCTAATCTCAAGTACTTGGAGTTGACAAATGGTTTAGTAAAAGACGGATTTTTCAAATGGATCTCATCTTGCTGCAAATGCATTGAGGACTTAGTTCTACAAGAAGTTGCTGCGAATAATATCACCATTGAAAGCTCGTCTTTGAAGACATTTTCTTTTGTGAATGATGATTCATTTGACGTACTTAACATCTCATGTGAGAAACTTGAATCTTTAATTATGGAGTGGATAATCCAATCACCTAGCAAATATTCATTAAATATTTTTGCCCCAAGGCTCAAGTATTTCAGTTGGAAGGGGAATTTGATGAACCACCGAAATCTTGGAAATTTAGAAATCCTACAAGAAGCTGAAATTCTTATGAAGCCTAAAGGAGATGAGTTTGAGAATGTATTTGAGGTTCTTTGCAGTTTAAGCAGGGCTAAAGTTCTTACCCTAAATGAAGAGACCATTAAGGTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

306

Amino Acids

34.43

Weight (kDa)

6.01

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 4 cut(s) 133, 754, 781, 807
AcvI CACGTG 1 cut(s) 168
AfaI GTAC 3 cut(s) 421, 467, 636
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 5 cut(s) 133, 508, 584, 598, 662
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 319, 353, 588, 803
AluI AGCT 4 cut(s) 319, 353, 588, 803
Alw26I GTCTC 1 cut(s) 893
AlwI GGATC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 525, 563
ApoI RAATTY 4 cut(s) 133, 754, 781, 807
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 568, 684
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 512, 550
BccI CCATC 3 cut(s) 133, 134, 373
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 3 cut(s) 179, 526, 564
BlsI GCNGC 3 cut(s) 180, 527, 565
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 89, 395
BpiI GAAGAC 1 cut(s) 605
BpuEI CTTGAG 2 cut(s) 446, 716
BsaAI YACGTR 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 2 cut(s) 337, 725
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 337, 725
BseGI GGATG 2 cut(s) 10, 386
BseMI GCAATG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 2 cut(s) 512, 550
Bsh1236I CGCG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 893
Bso31I GGTCTC 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 2 cut(s) 322, 513
Bsp68I TCGCGA 1 cut(s) 155
BspACI CCGC 1 cut(s) 178
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 893
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 337, 725
BssMI GATC 2 cut(s) 322, 513
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 433
Bst6I CTCTTC 2 cut(s) 309, 891
BstBAI YACGTR 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 10, 386
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 325, 516
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 2 cut(s) 322, 513
BstMWI GCNNNNNNNGC 3 cut(s) 239, 531, 867
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 512, 550
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuI GTATCC 1 cut(s) 213
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 10, 386
BtuMI TCGCGA 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 78
Csp6I GTAC 3 cut(s) 420, 466, 635
CviAII CATG 4 cut(s) 195, 282, 371, 648
CviQI GTAC 3 cut(s) 420, 466, 635
DdeI CTNAG 1 cut(s) 544
DpnI GATC 2 cut(s) 324, 515
DpnII GATC 2 cut(s) 322, 513
Eam1104I CTCTTC 2 cut(s) 309, 891
EarI CTCTTC 2 cut(s) 309, 891
Eco130I CCWWGG 1 cut(s) 725
Eco31I GGTCTC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 4 cut(s) 198, 285, 374, 651
FaiI YATR 9 cut(s) 62, 173, 196, 230, 283, 372, 649, 674, 815
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FatI CATG 4 cut(s) 194, 281, 370, 647
Fnu4HI GCNGC 3 cut(s) 179, 526, 564
FokI GGATG 2 cut(s) 17, 373
Fsp4HI GCNGC 3 cut(s) 179, 526, 564
FspBI CTAG 1 cut(s) 696
GluI GCNGC 3 cut(s) 179, 526, 564
HgaI GACGC 1 cut(s) 78
Hin1II CATG 4 cut(s) 198, 285, 374, 651
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 5 cut(s) 157, 191, 424, 623, 662
HphI GGTGA 2 cut(s) 568, 684
Hpy166II GTNNAC 3 cut(s) 289, 409, 477
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 3 cut(s) 23, 154, 326
Hpy8I GTNNAC 3 cut(s) 289, 409, 477
Hpy99I CGWCG 2 cut(s) 94, 155
HpyAV CCTTC 4 cut(s) 29, 61, 451, 742
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 3 cut(s) 167, 411, 633
HpyCH4V TGCA 8 cut(s) 102, 265, 296, 306, 386, 528, 534, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 531, 867
HpyF3I CTNAG 1 cut(s) 544
HpySE526I ACGT 3 cut(s) 167, 411, 633
Hsp92II CATG 4 cut(s) 198, 285, 374, 651
Kzo9I GATC 2 cut(s) 322, 513
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 36, 324, 351, 856
Lsp1109I GCAGC 2 cut(s) 512, 550
LweI GCATC 2 cut(s) 89, 395
MaeI CTAG 1 cut(s) 696
MaeII ACGT 3 cut(s) 167, 411, 633
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 324, 515
MboI GATC 2 cut(s) 322, 513
MboII GAAGA 3 cut(s) 326, 610, 908
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 6 cut(s) 133, 258, 669, 754, 781, 807
MlyI GAGTC 2 cut(s) 200, 433
MmeI TCCRAC 1 cut(s) 725
MnlI CCTC 5 cut(s) 210, 448, 463, 532, 844
Mph1103I ATGCAT 1 cut(s) 536
MseI TTAA 6 cut(s) 254, 639, 668, 710, 866, 906
MslI CAYNNNNRTG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 239, 531, 867
NdeII GATC 2 cut(s) 322, 513
NlaIII CATG 4 cut(s) 198, 285, 374, 651
NlaIV GGNNCC 1 cut(s) 287
NruI TCGCGA 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 3 cut(s) 157, 623, 662
PflFI GACNNNGTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 180, 527, 565
PleI GAGTC 2 cut(s) 199, 432
PmaCI CACGTG 1 cut(s) 168
PmlI CACGTG 1 cut(s) 168
PpsI GAGTC 2 cut(s) 199, 432
Ppu21I YACGTR 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 286
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PsuI RGATCY 1 cut(s) 513
PsyI GACNNNGTC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 3 cut(s) 421, 467, 636
RsaNI GTAC 3 cut(s) 420, 466, 635
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 6 cut(s) 254, 639, 668, 710, 866, 906
SatI GCNGC 3 cut(s) 179, 526, 564
Sau3AI GATC 2 cut(s) 322, 513
Sau96I GGNCC 1 cut(s) 286
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 2 cut(s) 200, 433
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 2 cut(s) 89, 395
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 461, 731
SmoI CTYRAG 2 cut(s) 461, 731
Sse9I AATT 6 cut(s) 133, 258, 669, 754, 781, 807
SsiI CCGC 1 cut(s) 178
SspI AATATT 2 cut(s) 704, 715
SspMI CTAG 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 3 cut(s) 170, 414, 636
TaqI TCGA 2 cut(s) 92, 271
TasI AATT 6 cut(s) 133, 258, 669, 754, 781, 807
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 3 cut(s) 157, 623, 662
Tru1I TTAA 6 cut(s) 254, 639, 668, 710, 866, 906
Tru9I TTAA 6 cut(s) 254, 639, 668, 710, 866, 906
TseI GCWGC 2 cut(s) 525, 563
TspDTI ATGAA 6 cut(s) 188, 615, 696, 776, 830, 909
TspGWI ACGGA 2 cut(s) 139, 513
Tth111I GACNNNGTC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 4 cut(s) 133, 754, 781, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XspI CTAG 1 cut(s) 696
ZrmI AGTACT 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.