Prupe.7G106200_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000241
Physical Location & Seq
Reverse (-)
13506506 .. 13507477
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G106200.1

Sequence Viewer

Length: 474 bp
ATGGTCTCTCTTTTAAGAGGAATGCCCAATTTGTGTACTTTACACACAAAGAATGATTCACTTATTTACAGTCGTAAATGCGATGACGTCCAGGTCCAGGCATCTGGGTTTGATATGGAATACTGGAAGCTGCAAAATCTGGATTTTATTTATCAGTTGGAGGAGGTTACCATAAAGCTTACCAAAGGGTCCGATGGGATTGAGTTTGCAAGGTACATACTCGAGCATGCCGAGGCCCTGGAGAAAATGAACTTAATTTATTCACCCCGACAATCTGATGTTATAAAGAAGCTAAACGAGAGTAAGATAATTTCCGATGCCACACTTAATTTCCGATGTCACACTGACCTTCCGATGAATCTATTTTGGAATTTCTTGCTCAAACGATATAGTTTTTTCAACTTTGATCTTTATGTAAATGAAAATTACGAAAAAGCTATATTCAAAATTTTTACTCTCTTTCTCTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

158

Amino Acids

18.67

Weight (kDa)

5.92

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 1 cut(s) 90
AcsI RAATTY 2 cut(s) 370, 447
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 37, 215
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 400, 445
AjnI CCWGG 3 cut(s) 90, 96, 237
AluBI AGCT 4 cut(s) 130, 178, 292, 437
AluI AGCT 4 cut(s) 130, 178, 292, 437
Alw26I GTCTC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 2 cut(s) 370, 447
AspS9I GGNCC 3 cut(s) 94, 189, 235
AsuHPI GGTGA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 94, 189
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 3 cut(s) 92, 98, 239
BcoDI GTCTC 1 cut(s) 10
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 3 cut(s) 92, 98, 239
Bme18I GGWCC 2 cut(s) 94, 189
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 94, 189, 235
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 92, 98, 239
BmsI GCATC 2 cut(s) 110, 307
BpmI CTGGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 231, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 3 cut(s) 92, 98, 239
BseDI CCNNGG 2 cut(s) 231, 237
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 406
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 231, 237
BssMI GATC 1 cut(s) 406
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 92, 98, 239
Bst4CI ACNGT 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 166
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 406
BstNI CCWGG 3 cut(s) 92, 98, 239
BstNSI RCATGY 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 90, 96, 237
BstV1I GCAGC 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 94, 189, 235
Csp6I GTAC 2 cut(s) 36, 214
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 130, 178, 236, 292, 437
CviKI_1 RGCY 5 cut(s) 130, 178, 236, 292, 437
CviQI GTAC 2 cut(s) 36, 214
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 94, 189
Eco88I CYCGRG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 90, 96, 237
FaeI CATG 1 cut(s) 230
FaiI YATR 8 cut(s) 116, 173, 218, 228, 284, 390, 414, 440
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 56, 358
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 5 cut(s) 193, 277, 316, 335, 354
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 133, 209
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 9 cut(s) 77, 83, 90, 104, 109, 110, 125, 224, 251
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 2 cut(s) 110, 307
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 166, 338
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MluCI AATT 7 cut(s) 28, 255, 309, 328, 370, 424, 447
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 11, 154, 157, 226
MseI TTAA 3 cut(s) 14, 254, 327
MspR9I CCNGG 3 cut(s) 92, 98, 239
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 3 cut(s) 92, 98, 239
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 338
NspI RCATGY 1 cut(s) 230
PaeI GCATGC 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 358
PkrI GCNGC 1 cut(s) 132
PsiI TTATAA 1 cut(s) 284
Psp6I CCWGG 3 cut(s) 90, 96, 237
PspEI GGTNACC 1 cut(s) 166
PspGI CCWGG 3 cut(s) 90, 96, 237
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 3 cut(s) 94, 189, 235
PspXI VCTCGAGB 1 cut(s) 221
RsaI GTAC 2 cut(s) 37, 215
RsaNI GTAC 2 cut(s) 36, 214
SaqAI TTAA 3 cut(s) 14, 254, 327
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 3 cut(s) 94, 189, 235
ScrFI CCNGG 3 cut(s) 92, 98, 239
SetI ASST 9 cut(s) 90, 96, 132, 168, 180, 215, 294, 351, 439
SfaNI GCATC 2 cut(s) 110, 307
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 2 cut(s) 94, 189
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SphI GCATGC 1 cut(s) 230
Sse9I AATT 7 cut(s) 28, 255, 309, 328, 370, 424, 447
StyD4I CCNGG 3 cut(s) 90, 96, 237
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 222
TasI AATT 7 cut(s) 28, 255, 309, 328, 370, 424, 447
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 2 cut(s) 56, 358
Tru1I TTAA 3 cut(s) 14, 254, 327
Tru9I TTAA 3 cut(s) 14, 254, 327
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 263, 371, 435
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 94, 189
XapI RAATTY 2 cut(s) 370, 447
XceI RCATGY 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 221
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.