Prupe.7G105000_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000241
Physical Location & Seq
Reverse (-)
13389936 .. 13392124
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G105000.1

Sequence Viewer

Length: 462 bp
ATGGCTTTGTTAAATGGAGTTTTCGTACCAGGGCTACTGAAGAATGTTTGTTATTTGTCTGTTCATATTGGAAGCTTTCTTGATATCCTAGTCCCAGAAATGGTCTCTATGTTTGGAGGAACGTGTAATTTGAGAACTTTGGAAATAAAGTCTGACCCACAGTTCCTTGACCTTAAAACTGATTGTTCTGGTTATAATATGGGATATTGGAGATTGCAAAACCTTGCGTTTATTCCTCATCTTAAGGAGGTAACCATAGAGCTGTCGAATGGGTCTAACGGAATCGAGTTAGCAGCGTATATGCTTGAGTATGCCCAAAACTTGAAGAAAATGGTGATTGTGCATTCGCCCCAGCAATGTAGTGTTATAAGGAAGTTAAATAAAAGCAAGAGGATTTCTAGTGCCACAGTAGTCTTTCAGGAAGATCAACAAAGAGGAAACAAAAAGCAAAGACTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

154

Amino Acids

17.3

Weight (kDa)

9.25

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 368
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 100
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 75, 262
AluI AGCT 2 cut(s) 75, 262
Alw26I GTCTC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 346
BbvI GCAGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 89, 399
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 343
Bso31I GGTCTC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 162, 409
BstAFI CTTAAG 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 455
BstEII GGTNACC 1 cut(s) 250
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 4 cut(s) 5, 34, 75, 262
CviKI_1 RGCY 4 cut(s) 5, 34, 75, 262
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 109
Eco32I GATATC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 85
FaiI YATR 9 cut(s) 66, 110, 195, 200, 257, 300, 302, 312, 368
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 89, 399
GluI GCNGC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 282
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 80, 419
HpyCH4III ACNGT 2 cut(s) 162, 409
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 217, 343
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 122
Kzo9I GATC 1 cut(s) 424
LpnPI CCDG 6 cut(s) 15, 42, 108, 174, 365, 404
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 2 cut(s) 89, 399
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 3 cut(s) 52, 337, 434
MluCI AATT 1 cut(s) 127
MnlI CCTC 5 cut(s) 110, 241, 246, 384, 428
MseI TTAA 4 cut(s) 11, 174, 243, 377
MspCI CTTAAG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 1 cut(s) 30
NdeII GATC 1 cut(s) 424
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 295
PsiI TTATAA 2 cut(s) 195, 368
Psp6I CCWGG 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 28
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 4 cut(s) 11, 174, 243, 377
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 30
SetI ASST 6 cut(s) 77, 125, 174, 225, 252, 264
SmlI CTYRAG 2 cut(s) 242, 305
SmoI CTYRAG 2 cut(s) 242, 305
Sse9I AATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 89, 399
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 162, 409
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 266, 285
TasI AATT 1 cut(s) 127
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 11, 174, 243, 377
Tru9I TTAA 4 cut(s) 11, 174, 243, 377
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 294
Vha464I CTTAAG 1 cut(s) 242
XspI CTAG 2 cut(s) 89, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.