pycom12g02570

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000241
Physical Location & Seq
Forward (+)
2325322 .. 2326964
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02570.3

Sequence Viewer

Length: 1377 bp
ATGACTGTGGTAGATAGATTCAGTGATCTCCCGATTGGAGTTACTCATCACATCCTTTCCTTCCTTAATATAAGGGACCTCACTTGTTTCAGCATTGCGTCCAAAAGATGCAGAGAACTTTATCTGTCAACTCCGTCATTGGATTTCGGTGATTTATTACCGAAGAGAACACCCAAGGGTTCCAGCCACGTTACATGTGAGTTTAGGTTGAAGTTGTTGAGTTCATTGGATAGGTTCTTGCTTAAACGTGGGGATAATAAGATAAAGTACTTTCGTCTGTTTTGGACCGGTCACTTAATCAAAACCAGAGATCGAACACCATGCTTCTGTGTTCATGAGAATTTTCGAATAGTCAATTTAATTCACAATGCAGTGAGGTGTAATGTTGAAGTCCTTGATATTTTTTTGGAGGAAAAGTTAGCATTTCCCTTTAGTGTCTTCCTTTGTGAAACTTTGAAGTCTCTGGTGATTAATATGCCTTCCGTTGTTAAAACACCTTCGGTTGCTTTTTCCTCCAACCTTGAATACTTGGAGTTGATGAATGTAGAAATAAAAGATGAGGGGTTTTTCAAGTGGATCTCATGTTCCTGCAAATCCATCAAGGAATTAATTCTTTGCGGTCTTGGTCGCATAAAAAATATCACCATTGAAAGCTCGTCCTTGGAAAAATTTGAACTATATGACGGCTTTTGTACCCCAATCCATCTTAACATCTCAGGTGAGAAACTTGAAACCATACGCGTTTCCTGGAGATTCCGTTCGTCTAAAGGCAAATCGTTAAATATTTTTGCTCCAAAACTTAGATATTTGTTTTGGAGGGGGAATGTGATGAAGAAAGCAAACCTAGGAAAATTAGAATGTGTAGAAGAAGCATCTATGTTTCTGGAGCCTAAAGCAGATGACTTTGACAACCTGTTAAAGGTTTTTTGCAGTATGCACAGGGCTTTGTTCAGGGAAGGAGGATCCACACAAGCTCGATTCAATAACCTTTCGTATTTGGAAATGGATATTCGGAGCTTTTCTGATGAGCTGGTTCCTGCATTGGTCTCTCTTTTAAGAGGAACGCCCAATTTGTGTACTTTATACATAGGTTATCACTCAAGTCGTGACACCAAATCTGATGTAGGGGCATCTAGGTTTGATGTGGAACACTGGAAGCTCCAACATCTGGAATTTATTCATCAAACTGAGGAGGTTACCATAGCGCTTCCCAGTGGGTCGAATGGGATTGAGTTTGCAAGGTACATACTCGAGAATGCCGAGAAGCTGGAGCAAATGACAATAATTCATTTACCCGAGCAATCTGATGCTATACAGAAGCTAAATGATAGTAAGATGGTGTCCAAGGCCACAGTGATATTCAAGGAAGACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

459

Amino Acids

52.58

Weight (kDa)

8.29

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccII CGCG 1 cut(s) 741
AciI CCGC 1 cut(s) 618
AclWI GGATC 3 cut(s) 584, 957, 970
AcsI RAATTY 3 cut(s) 340, 668, 1172
AfaI GTAC 4 cut(s) 269, 694, 1078, 1244
AfeI AGCGCT 1 cut(s) 1206
AfiI CCNNNNNNNGG 2 cut(s) 919, 1168
AflIII ACRYGT 2 cut(s) 194, 739
AgeI ACCGGT 1 cut(s) 287
AjnI CCWGG 1 cut(s) 746
AloI GAACNNNNNNTCC 4 cut(s) 568, 600, 742, 774
AluBI AGCT 8 cut(s) 654, 974, 1017, 1030, 1159, 1267, 1321, 1374
AluI AGCT 8 cut(s) 654, 974, 1017, 1030, 1159, 1267, 1321, 1374
Alw26I GTCTC 2 cut(s) 465, 1051
AlwI GGATC 3 cut(s) 584, 957, 970
Ama87I CYCGRG 2 cut(s) 1250, 1295
Aor51HI AGCGCT 1 cut(s) 1206
AoxI GGCC 1 cut(s) 1347
ApoI RAATTY 3 cut(s) 340, 668, 1172
AseI ATTAAT 2 cut(s) 471, 608
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 609, 1176
AspA2I CCTAGG 1 cut(s) 844
AspLEI GCGC 1 cut(s) 1207
AspS9I GGNCC 2 cut(s) 76, 285
AsuHPI GGTGA 4 cut(s) 161, 478, 634, 731
AsuII TTCGAA 1 cut(s) 346
AvaI CYCGRG 2 cut(s) 1250, 1295
AvaII GGWCC 2 cut(s) 76, 285
AvrII CCTAGG 1 cut(s) 844
BamHI GGATCC 1 cut(s) 962
BbsI GAAGAC 1 cut(s) 430
BccI CCATC 3 cut(s) 605, 711, 1330
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 465, 1051
BfaI CTAG 3 cut(s) 845, 1134, 1375
BfoI RGCGCY 1 cut(s) 1208
BlnI CCTAGG 1 cut(s) 844
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 748
Bme18I GGWCC 2 cut(s) 76, 285
BmeT110I CYCGRG 2 cut(s) 1250, 1295
BmgT120I GGNCC 2 cut(s) 76, 285
BmiI GGNNCC 5 cut(s) 77, 181, 888, 964, 1035
BmrFI CCNGG 1 cut(s) 748
BmrI ACTGGG 1 cut(s) 1206
BmsI GCATC 4 cut(s) 98, 881, 1139, 1297
BmuI ACTGGG 1 cut(s) 1206
BpiI GAAGAC 1 cut(s) 430
BpmI CTGGAG 3 cut(s) 769, 905, 1289
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 1084
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 4 cut(s) 174, 660, 844, 1344
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 742, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 919, 1168
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 1157, 1212
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 748
BseDI CCNNGG 4 cut(s) 174, 660, 844, 1344
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 919, 1168
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 729, 1179
BseNI ACTGG 2 cut(s) 1157, 1212
BseRI GAGGAG 1 cut(s) 1205
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 1 cut(s) 1349
BshTI ACCGGT 1 cut(s) 287
BsiHKCI CYCGRG 2 cut(s) 1250, 1295
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 919, 1168
BsmAI GTCTC 2 cut(s) 465, 1051
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 1 cut(s) 1349
Bso31I GGTCTC 1 cut(s) 1051
BsoBI CYCGRG 2 cut(s) 1250, 1295
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 25, 310, 576, 962
BspACI CCGC 1 cut(s) 618
BspANI GGCC 1 cut(s) 1349
BspCNI CTCAG 2 cut(s) 728, 1180
BspFNI CGCG 1 cut(s) 741
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 5 cut(s) 77, 181, 888, 964, 1035
BspPI GGATC 3 cut(s) 584, 957, 970
BspT104I TTCGAA 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 1157, 1212
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 4 cut(s) 174, 660, 844, 1344
BssMI GATC 4 cut(s) 25, 310, 576, 962
BssT1I CCWWGG 4 cut(s) 174, 660, 844, 1344
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 2 cut(s) 7, 1354
Bst6I CTCTTC 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 715, 800, 1188
BstEII GGTNACC 1 cut(s) 1195
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 1 cut(s) 1208
BstHHI GCGC 1 cut(s) 1207
BstKTI GATC 4 cut(s) 28, 313, 579, 965
BstMAI GTCTC 2 cut(s) 465, 1051
BstMBI GATC 4 cut(s) 25, 310, 576, 962
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 1 cut(s) 198
BstPI GGTNACC 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 746
BstUI CGCG 1 cut(s) 741
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 576, 962
BstYI RGATCY 2 cut(s) 576, 962
BsuRI GGCC 1 cut(s) 1349
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 5 cut(s) 28, 378, 1150, 1219, 1359
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 1207
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 76, 285
CseI GACGC 1 cut(s) 87
Csp6I GTAC 4 cut(s) 268, 693, 1077, 1243
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 4 cut(s) 195, 321, 335, 582
CviQI GTAC 4 cut(s) 268, 693, 1077, 1243
DdeI CTNAG 3 cut(s) 715, 800, 1188
DpnI GATC 4 cut(s) 27, 312, 578, 964
DpnII GATC 4 cut(s) 25, 310, 576, 962
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 4 cut(s) 174, 660, 844, 1344
Eco31I GGTCTC 1 cut(s) 1051
Eco47I GGWCC 2 cut(s) 76, 285
Eco47III AGCGCT 1 cut(s) 1206
Eco88I CYCGRG 2 cut(s) 1250, 1295
Eco91I GGTNACC 1 cut(s) 1195
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 1195
EcoRII CCWGG 1 cut(s) 746
EcoT14I CCWWGG 4 cut(s) 174, 660, 844, 1344
ErhI CCWWGG 4 cut(s) 174, 660, 844, 1344
FaeI CATG 4 cut(s) 198, 324, 338, 585
FaqI GGGAC 1 cut(s) 89
FatI CATG 4 cut(s) 194, 320, 334, 581
FokI GGATG 1 cut(s) 38
FspBI CTAG 3 cut(s) 845, 1134, 1375
GlaI GCGC 1 cut(s) 1206
GsuI CTGGAG 3 cut(s) 769, 905, 1289
HaeII RGCGCY 1 cut(s) 1208
HaeIII GGCC 1 cut(s) 1349
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 1207
Hin1II CATG 4 cut(s) 198, 324, 338, 585
Hin6I GCGC 1 cut(s) 1205
HinP1I GCGC 1 cut(s) 1205
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 3 cut(s) 18, 753, 978
HpaII CCGG 1 cut(s) 288
HphI GGTGA 4 cut(s) 161, 478, 634, 731
Hpy166II GTNNAC 2 cut(s) 129, 1077
Hpy188I TCNGA 4 cut(s) 1014, 1024, 1120, 1306
Hpy188III TCNNGA 6 cut(s) 31, 335, 884, 1106, 1169, 1252
Hpy8I GTNNAC 2 cut(s) 129, 1077
HpyAV CCTTC 4 cut(s) 70, 489, 507, 950
HpyCH4III ACNGT 2 cut(s) 7, 1354
HpyCH4IV ACGT 2 cut(s) 189, 247
HpyCH4V TGCA 7 cut(s) 111, 371, 591, 930, 937, 1040, 1238
HpyF3I CTNAG 3 cut(s) 715, 800, 1188
HpySE526I ACGT 2 cut(s) 189, 247
Hsp92II CATG 4 cut(s) 198, 324, 338, 585
HspAI GCGC 1 cut(s) 1205
Kzo9I GATC 4 cut(s) 25, 310, 576, 962
LmnI GCTCC 5 cut(s) 796, 886, 1014, 1164, 1270
LweI GCATC 4 cut(s) 98, 881, 1139, 1297
MaeI CTAG 3 cut(s) 845, 1134, 1375
MaeII ACGT 2 cut(s) 189, 247
MaeIII GTNAC 5 cut(s) 40, 190, 290, 1106, 1195
MalI GATC 4 cut(s) 27, 312, 578, 964
MboI GATC 4 cut(s) 25, 310, 576, 962
MboII GAAGA 4 cut(s) 175, 430, 844, 878
MflI RGATCY 2 cut(s) 576, 962
MluI ACGCGT 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 540, 1186
MroXI GAANNNNTTC 2 cut(s) 609, 1176
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 748
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 1 cut(s) 748
MvnI CGCG 1 cut(s) 741
NdeII GATC 4 cut(s) 25, 310, 576, 962
NlaIII CATG 4 cut(s) 198, 324, 338, 585
NlaIV GGNNCC 5 cut(s) 77, 181, 888, 964, 1035
NmeAIII GCCGAG 1 cut(s) 1285
NmuCI GTSAC 2 cut(s) 290, 1106
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 1250
PagI TCATGA 1 cut(s) 334
PciI ACATGT 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 1257
PctI GAATGC 1 cut(s) 1261
PdmI GAANNNNTTC 2 cut(s) 609, 1176
PfeI GAWTC 3 cut(s) 18, 753, 978
PflMI CCANNNNNTGG 1 cut(s) 1168
PfoI TCCNGGA 1 cut(s) 746
PinAI ACCGGT 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 194
PshBI ATTAAT 2 cut(s) 471, 608
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 746
PspEI GGTNACC 1 cut(s) 1195
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 5 cut(s) 77, 181, 888, 964, 1035
PspPI GGNCC 2 cut(s) 76, 285
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 2 cut(s) 576, 962
RsaI GTAC 4 cut(s) 269, 694, 1078, 1244
RsaNI GTAC 4 cut(s) 268, 693, 1077, 1243
Sau3AI GATC 4 cut(s) 25, 310, 576, 962
Sau96I GGNCC 2 cut(s) 76, 285
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 748
SfaNI GCATC 4 cut(s) 98, 881, 1139, 1297
Sfr274I CTCGAG 1 cut(s) 1250
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 2 cut(s) 76, 285
SlaI CTCGAG 1 cut(s) 1250
SmlI CTYRAG 2 cut(s) 1099, 1250
SmoI CTYRAG 2 cut(s) 1099, 1250
SsiI CCGC 1 cut(s) 618
SspI AATATT 1 cut(s) 784
SspMI CTAG 3 cut(s) 845, 1134, 1375
StyD4I CCNGG 1 cut(s) 746
StyI CCWWGG 4 cut(s) 174, 660, 844, 1344
TaaI ACNGT 2 cut(s) 7, 1354
TaiI ACGT 2 cut(s) 192, 250
TaqI TCGA 5 cut(s) 313, 346, 976, 1220, 1251
TatI WGTACW 2 cut(s) 267, 1076
TfiI GAWTC 3 cut(s) 18, 753, 978
TscAI CASTG 5 cut(s) 28, 378, 1157, 1219, 1359
TseFI GTSAC 2 cut(s) 290, 1106
Tsp45I GTSAC 2 cut(s) 290, 1106
TspDTI ATGAA 6 cut(s) 213, 323, 554, 845, 1169, 1277
TspGWI ACGGA 3 cut(s) 123, 472, 746
TspRI CASTG 5 cut(s) 28, 378, 1157, 1219, 1359
Van91I CCANNNNNTGG 1 cut(s) 1168
VpaK11BI GGWCC 2 cut(s) 76, 285
VspI ATTAAT 2 cut(s) 471, 608
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 3 cut(s) 340, 668, 1172
XceI RCATGY 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 1250
XmaJI CCTAGG 1 cut(s) 844
XmnI GAANNNNTTC 2 cut(s) 609, 1176
XspI CTAG 3 cut(s) 845, 1134, 1375
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.