Rmu_co8028860.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8028860.1
OG0000241
Physical Location & Seq
Reverse (-)
2 .. 468
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8028860.1_g000001.1.cds

Sequence Viewer

Length: 467 bp
atgtctctgtccgctccgtctgtgagcatttgtggatttggtgtagatgaaatagcggagatgccgtgtgaagttcggttgaaactggtgaatgcattggataggttcttgcttagtcgcggggataatgagatgcggaaatttactcttgtttgggagggtcatcatgaggacgaggtcgaggaaccgccatgcttctgtgttaatgagagtttccgaatgatcacctggattcagaatgcactgaggtgtaatgttgaaaagctttttattgatgtgaccttttatgattgtgatggggaacttttagcatttccgtcttgcgtctttaattgtgcatctttgaggtctctagtggtagaaatgtcatttacggttgttaaaacaccctcatttacgttctcatctaatcttgagaccttggcattgagcgatgttgatattgcagacgaggggtttttcaagtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

4.41

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 1 cut(s) 120
AciI CCGC 5 cut(s) 12, 56, 120, 136, 188
AcsI RAATTY 1 cut(s) 140
AgsI TTSAA 3 cut(s) 82, 260, 463
AjnI CCWGG 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 247
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 3 cut(s) 9, 354, 410
ApoI RAATTY 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 100, 217
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 9, 354, 410
BfaI CTAG 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 3 cut(s) 51, 123, 347
BpuEI CTTGAG 1 cut(s) 434
BsaI GGTCTC 2 cut(s) 354, 410
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse1I ACTGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 120
BsmAI GTCTC 3 cut(s) 9, 354, 410
BsmI GAATGC 2 cut(s) 97, 244
Bso31I GGTCTC 2 cut(s) 354, 410
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 5 cut(s) 12, 56, 120, 136, 188
BspCNI CTCAG 1 cut(s) 237
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 186
BspTNI GGTCTC 2 cut(s) 354, 410
BsrBI CCGCTC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 113, 245
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 3 cut(s) 9, 354, 410
BstMBI GATC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 166
CseI GACGC 1 cut(s) 313
CviAII CATG 2 cut(s) 167, 192
CviJI RGCY 1 cut(s) 265
CviKI_1 RGCY 1 cut(s) 265
DdeI CTNAG 2 cut(s) 113, 245
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 2 cut(s) 354, 410
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 170, 195
FaiI YATR 3 cut(s) 168, 193, 288
FatI CATG 2 cut(s) 166, 191
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 222
FspBI CTAG 1 cut(s) 353
HgaI GACGC 1 cut(s) 313
Hin1II CATG 2 cut(s) 170, 195
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 232
HphI GGTGA 2 cut(s) 100, 217
Hpy188I TCNGA 2 cut(s) 218, 237
Hpy188III TCNNGA 2 cut(s) 167, 413
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 4 cut(s) 95, 242, 338, 446
HpyF3I CTNAG 2 cut(s) 113, 245
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 2 cut(s) 170, 195
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 71, 214, 241
LweI GCATC 3 cut(s) 51, 123, 347
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 224
MbiI CCGCTC 1 cut(s) 14
MboI GATC 1 cut(s) 222
MluCI AATT 2 cut(s) 140, 331
MnlI CCTC 8 cut(s) 151, 163, 169, 175, 240, 339, 400, 445
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 3 cut(s) 204, 330, 381
MslI CAYNNNNRTG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 2 cut(s) 97, 244
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 120
NdeII GATC 1 cut(s) 222
NlaIII CATG 2 cut(s) 170, 195
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 247
PagI TCATGA 1 cut(s) 166
PctI GAATGC 2 cut(s) 97, 244
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 186
PsyI GACNNNGTC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 3 cut(s) 204, 330, 381
Sau3AI GATC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 229
SetI ASST 9 cut(s) 107, 180, 230, 251, 267, 284, 350, 401, 422
SfaNI GCATC 3 cut(s) 51, 123, 347
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 140, 331
SsiI CCGC 5 cut(s) 12, 56, 120, 136, 188
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 140, 331
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 204, 330, 381
Tru9I TTAA 3 cut(s) 204, 330, 381
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 2 cut(s) 6, 306
TspRI CASTG 1 cut(s) 249
Tth111I GACNNNGTC 1 cut(s) 176
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.