Rmu_sc0005137.1_g000004

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005137.1
OG0000241
Physical Location & Seq
Reverse (-)
12880 .. 16487
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005137.1_g000004.1.cds

Sequence Viewer

Length: 1224 bp
atgaggcaagaattggcttgtggaaattatctgaactcccatgatcgtagtcatcagggggaggcgcagacatcagggggagatgtctacatgttcacctcgaaacgtgaagggtgtgttgtgctcttttcccccttcgaccgaggttatttttgtcccactgggtttttgttactcggcaaggttcttgcttgggatggtcacagtgatgaagagcttgacgaaacatgtttctgtgtcaatgagaatttccgaataatcacctggatccagaatgctgtgaggtgtaaagttgaaaaggtttatcttgacgtcacctattttgattatgagggggagccattggcatttccatcttgcgtctttcgttctgcatcattgaggtctatagtggttagtatgccacgtacagttgttaaaacaccctccttcactttttcctccaatatcgaaaagttgcatttaagcgatgttgttatacaggacgaggggtttttcgagtggatttcctattcctgcaaatccttgaaggatgtaactctttcagcagttcgtgagatacatagtatcaccattgaaagctcgtctttggaaagattttatttcattaattacgaggttgatgaaacctgccatattaacatctctggtgagaaacttgaagaaataaatgtcaggtgcaatcattcacctagcagcaccatattaaaaattgttgctccaaatgttaaacttttgcttttggaggggaatgtgaaaaatcacctaaatctgggagaattgaaatgtttggaacaagccgccattcttatggagcctatagtagatgagtttaacaaagtatttgaggttctttccagtttgtgcagtgttgaagttcttgttctaaatgaagctaccatccaggctgcatatagggaggaatgcatgcaagctcgattggatgagatttggtacttgcaaatgaatattggtagctttgctgatgatctagtcccggcagtcgtctgtcttttaagaggaacaccagagttgtgtactttatacattcgctataaaccaacttcacttgatcataaatctaatacgtctgggtttgatatggagtattggaagaagcaaaacctggattttatttctcaggttcaggacgttaccatagagctcagtgctgggtttaatggaattgagttagcaaggtgtgacctgaagttagaaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

407

Amino Acids

46.24

Weight (kDa)

4.84

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 638
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 801
AclWI GGATC 2 cut(s) 262, 275
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 3 cut(s) 409, 956, 1039
AfiI CCNNNNNNNGG 1 cut(s) 772
AflIII ACRYGT 2 cut(s) 90, 227
AgsI TTSAA 6 cut(s) 296, 529, 578, 662, 784, 875
AjnI CCWGG 3 cut(s) 263, 903, 1125
AluBI AGCT 6 cut(s) 217, 582, 896, 935, 978, 1165
AluI AGCT 6 cut(s) 217, 582, 896, 935, 978, 1165
Alw21I GWGCWC 2 cut(s) 126, 1167
AlwI GGATC 2 cut(s) 262, 275
ApeKI GCWGC 2 cut(s) 696, 908
ApoI RAATTY 1 cut(s) 247
AseI ATTAAT 1 cut(s) 609
AspLEI GCGC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 7 cut(s) 88, 253, 307, 562, 662, 681, 755
BamHI GGATCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 1167
Bbv12I GWGCWC 2 cut(s) 126, 1167
BbvI GCAGC 2 cut(s) 708, 895
BccI CCATC 3 cut(s) 191, 361, 908
BciT130I CCWGG 3 cut(s) 265, 905, 1127
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 998
BfaI CTAG 2 cut(s) 693, 992
BfmI CTRYAG 2 cut(s) 387, 819
BfuAI ACCTGC 1 cut(s) 638
BisI GCNGC 3 cut(s) 697, 801, 909
BlsI GCNGC 3 cut(s) 698, 802, 910
Bme1390I CCNGG 4 cut(s) 265, 905, 998, 1127
BmiI GGNNCC 3 cut(s) 269, 339, 816
BmrFI CCNGG 4 cut(s) 265, 905, 998, 1127
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 998
BsaAI YACGTR 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse1I ACTGG 2 cut(s) 166, 858
BseBI CCWGG 3 cut(s) 265, 905, 1127
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 4 cut(s) 202, 538, 900, 949
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMII CTCAG 2 cut(s) 1154, 1180
BseNI ACTGG 2 cut(s) 166, 858
BseXI GCAGC 2 cut(s) 708, 895
BseYI CCCAGC 1 cut(s) 1172
BsgI GTGCAG 1 cut(s) 886
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 126, 1167
BsiSI CCGG 1 cut(s) 998
BslFI GGGAC 2 cut(s) 141, 980
BslI CCNNNNNNNGG 1 cut(s) 772
BsmFI GGGAC 2 cut(s) 141, 980
BsmI GAATGC 2 cut(s) 280, 929
Bsp1286I GDGCHC 2 cut(s) 126, 1167
Bsp143I GATC 4 cut(s) 43, 267, 988, 1072
BspACI CCGC 1 cut(s) 801
BspCNI CTCAG 2 cut(s) 1153, 1179
BspLI GGNNCC 3 cut(s) 269, 339, 816
BspMI ACCTGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 262, 275
BspQI GCTCTTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 166, 858
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 4 cut(s) 43, 267, 988, 1072
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 3 cut(s) 265, 905, 1127
Bst4CI ACNGT 2 cut(s) 206, 412
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 929, 933
BstDEI CTNAG 3 cut(s) 1140, 1166, 1221
BstF5I GGATG 4 cut(s) 202, 538, 900, 949
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 46, 270, 991, 1075
BstMBI GATC 4 cut(s) 43, 267, 988, 1072
BstMCI CGRYCG 1 cut(s) 142
BstNI CCWGG 3 cut(s) 265, 905, 1127
BstNSI RCATGY 3 cut(s) 94, 231, 931
BstSCI CCNGG 4 cut(s) 263, 903, 996, 1125
BstSFI CTRYAG 2 cut(s) 387, 819
BstV1I GCAGC 2 cut(s) 708, 895
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 811
BstYI RGATCY 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 4 cut(s) 202, 538, 900, 949
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 4 cut(s) 159, 211, 874, 1174
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 2 cut(s) 929, 933
CfoI GCGC 1 cut(s) 67
CseI GACGC 1 cut(s) 349
Csp6I GTAC 3 cut(s) 408, 955, 1038
CviAII CATG 4 cut(s) 41, 91, 228, 928
CviQI GTAC 3 cut(s) 408, 955, 1038
DdeI CTNAG 3 cut(s) 1140, 1166, 1221
DpnI GATC 4 cut(s) 45, 269, 990, 1074
DpnII GATC 4 cut(s) 43, 267, 988, 1072
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 1165
Eco24I GRGCYC 1 cut(s) 1167
Eco53kI GAGCTC 1 cut(s) 1165
EcoICRI GAGCTC 1 cut(s) 1165
EcoRII CCWGG 3 cut(s) 263, 903, 1125
EcoT22I ATGCAT 1 cut(s) 929
EcoT38I GRGCYC 1 cut(s) 1167
FaeI CATG 4 cut(s) 44, 94, 231, 931
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FaqI GGGAC 2 cut(s) 141, 980
FatI CATG 4 cut(s) 40, 90, 227, 927
FbaI TGATCA 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 697, 801, 909
FokI GGATG 4 cut(s) 209, 545, 887, 956
FriOI GRGCYC 1 cut(s) 1167
Fsp4HI GCNGC 3 cut(s) 697, 801, 909
FspBI CTAG 2 cut(s) 693, 992
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 697, 801, 909
GsaI CCCAGC 1 cut(s) 1176
HapII CCGG 1 cut(s) 998
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 44, 94, 231, 931
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HpaII CCGG 1 cut(s) 998
HphI GGTGA 7 cut(s) 88, 253, 307, 562, 662, 681, 755
Hpy166II GTNNAC 3 cut(s) 88, 96, 1038
Hpy188I TCNGA 2 cut(s) 33, 254
Hpy188III TCNNGA 4 cut(s) 271, 308, 554, 1148
Hpy8I GTNNAC 3 cut(s) 88, 96, 1038
HpyAV CCTTC 4 cut(s) 104, 145, 439, 523
HpyCH4III ACNGT 2 cut(s) 206, 412
HpyCH4IV ACGT 5 cut(s) 106, 312, 406, 1088, 1152
HpyCH4V TGCA 9 cut(s) 374, 460, 519, 681, 867, 911, 927, 931, 961
HpyF3I CTNAG 3 cut(s) 1140, 1166, 1221
HpySE526I ACGT 5 cut(s) 106, 312, 406, 1088, 1152
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 44, 94, 231, 931
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 43, 267, 988, 1072
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 3 cut(s) 337, 724, 814
Lsp1109I GCAGC 2 cut(s) 708, 895
LweI GCATC 1 cut(s) 383
MaeI CTAG 2 cut(s) 693, 992
MaeII ACGT 5 cut(s) 106, 312, 406, 1088, 1152
MaeIII GTNAC 6 cut(s) 171, 200, 313, 535, 1153, 1202
MalI GATC 4 cut(s) 45, 269, 990, 1074
MboI GATC 4 cut(s) 43, 267, 988, 1072
MboII GAAGA 3 cut(s) 224, 674, 1126
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 126, 1167
MluCI AATT 7 cut(s) 11, 25, 247, 610, 711, 779, 1185
Mph1103I ATGCAT 1 cut(s) 929
MseI TTAA 9 cut(s) 417, 464, 609, 639, 707, 729, 834, 1016, 1179
MslI CAYNNNNRTG 2 cut(s) 207, 809
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 4 cut(s) 265, 905, 998, 1127
Mva1269I GAATGC 2 cut(s) 280, 929
MvaI CCWGG 3 cut(s) 265, 905, 1127
NciI CCSGG 1 cut(s) 998
NdeII GATC 4 cut(s) 43, 267, 988, 1072
NlaIII CATG 4 cut(s) 44, 94, 231, 931
NlaIV GGNNCC 3 cut(s) 269, 339, 816
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 3 cut(s) 200, 313, 1202
NsiI ATGCAT 1 cut(s) 929
NspI RCATGY 3 cut(s) 94, 231, 931
PaeI GCATGC 1 cut(s) 931
PciI ACATGT 2 cut(s) 90, 227
PciSI GCTCTTC 1 cut(s) 207
PctI GAATGC 2 cut(s) 280, 929
PkrI GCNGC 3 cut(s) 698, 802, 910
Ppu21I YACGTR 1 cut(s) 407
PscI ACATGT 2 cut(s) 90, 227
PshBI ATTAAT 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 1167
Psp6I CCWGG 3 cut(s) 263, 903, 1125
PspFI CCCAGC 1 cut(s) 1172
PspGI CCWGG 3 cut(s) 263, 903, 1125
PspN4I GGNNCC 3 cut(s) 269, 339, 816
PsrI GAACNNNNNNTAC 2 cut(s) 834, 866
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 3 cut(s) 409, 956, 1039
RsaNI GTAC 3 cut(s) 408, 955, 1038
RseI CAYNNNNRTG 2 cut(s) 207, 809
SacI GAGCTC 1 cut(s) 1167
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 9 cut(s) 417, 464, 609, 639, 707, 729, 834, 1016, 1179
SatI GCNGC 3 cut(s) 697, 801, 909
Sau3AI GATC 4 cut(s) 43, 267, 988, 1072
ScrFI CCNGG 4 cut(s) 265, 905, 998, 1127
SduI GDGCHC 2 cut(s) 126, 1167
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 2 cut(s) 387, 819
SmiMI CAYNNNNRTG 2 cut(s) 207, 809
SphI GCATGC 1 cut(s) 931
Sse9I AATT 7 cut(s) 11, 25, 247, 610, 711, 779, 1185
SsiI CCGC 1 cut(s) 801
SspI AATATT 1 cut(s) 970
SspMI CTAG 2 cut(s) 693, 992
SstI GAGCTC 1 cut(s) 1167
StyD4I CCNGG 4 cut(s) 263, 903, 996, 1125
TaaI ACNGT 2 cut(s) 206, 412
TaiI ACGT 5 cut(s) 109, 315, 409, 1091, 1155
TaqI TCGA 5 cut(s) 101, 138, 450, 498, 937
TaqII GACCGA 1 cut(s) 156
TasI AATT 7 cut(s) 11, 25, 247, 610, 711, 779, 1185
TatI WGTACW 1 cut(s) 1037
TauI GCSGC 1 cut(s) 803
Tru1I TTAA 9 cut(s) 417, 464, 609, 639, 707, 729, 834, 1016, 1179
Tru9I TTAA 9 cut(s) 417, 464, 609, 639, 707, 729, 834, 1016, 1179
TscAI CASTG 4 cut(s) 166, 211, 874, 1174
TseFI GTSAC 3 cut(s) 200, 313, 1202
TseI GCWGC 2 cut(s) 696, 908
Tsp45I GTSAC 3 cut(s) 200, 313, 1202
TspDTI ATGAA 5 cut(s) 225, 595, 639, 906, 980
TspRI CASTG 4 cut(s) 166, 211, 874, 1174
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 1 cut(s) 247
XceI RCATGY 3 cut(s) 94, 231, 931
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 693, 992
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.