Prupe.7G104900_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000241
Physical Location & Seq
Reverse (-)
13383073 .. 13384143
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G104900.1

Sequence Viewer

Length: 1071 bp
ATGGAACACAAACCTAAGTTAATGGCCACTGTAAGTCGTCAAGGTCAAGGAGTGCATGCTGATTGTATAATGATAGATAGATTGAGTAATCTTCCAGACCCTATCGCCCACCACATTTTTTCCTTCGTTGATCTAAAAGACATCGTACGAGTGGGCTGTGCGTCCAAAAGATGCAGACAATTTCACCTGTCAACTCCAACTTTGAGTTTCAATTTCAATGAATTTCCCGACATGAAGAAATCCCCGTGTAGCAAGAGGTTAGAGGTGATGAATTCTTTGGATAGGTTGTTAGCTCATCGCCAGAACGATAAGTTAAAACGCTTCCACATCCATTGGGTTCCACATAACCGCTACGTGGAGGACTGCTCTTGTGATGAGAGCTTTCGGATCATGACGTGGGTCTACGATGCAGTAAGGTGCGAAGTTGAAGAGCTTGATCTTGACATCTGTGTACATCAAGAGACACCATTAGCATTATCGTCCTTCATGTTTCTTTGTGATTCTTTGAGGTCTTTATCAGTGAACATGAAGTGTGTTCTTAAAGCACCGCCCCTCAATTCGTCATCTAATCTAAAAAGCCTGAATTTGAGAGAAGTTTGTATAGTAGACGAGGAGTTTTTCACATGGATTTCATGTTGCTGCAAGTGCATAAAGGAATTGCGTCTTCATGATATTTATGGGGTACAAAATATCACCATCGAAAGCTCTTCTCTGGAATCATTTGTTTTTCGGTGTCCCGGTTTGAGTGCTGGCTGCAATCTCAACATCTCAGGAGAGAAACTTGAAAGCTTACATATCTATTGGGGAAATATTTTTCTTGACAGGAAATCGTCGTTAAATCTTTTCGCTCCAAATCTTAAATCTTTGATTTGGTCGGGGAGTTTGTTTTCTCACCAAAATGTGGGGAAATTAACGTGTTTAGAGAAGGCTGAGCTTTCTTTGAAGGTTAAGTCTGGAAAAGAGTTCGACATCATATATGAGATTCTCTGCAGCATGCCTGAGGTTAAAGTTCTTATTCTACACAAAGAGATCACCAAGGTAATTAAAGAGACGCTACTTTCAAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

357

Amino Acids

40.72

Weight (kDa)

7.5

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 901
AccI GTMKAC 2 cut(s) 402, 606
AciI CCGC 2 cut(s) 349, 548
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 221, 271, 583
AfaI GTAC 3 cut(s) 147, 453, 684
AfiI CCNNNNNNNGG 2 cut(s) 355, 901
AflIII ACRYGT 1 cut(s) 914
AgsI TTSAA 6 cut(s) 211, 217, 428, 785, 943, 1062
AjiI CACGTC 1 cut(s) 396
AluBI AGCT 7 cut(s) 293, 381, 433, 705, 789, 934, 1065
AluI AGCT 7 cut(s) 293, 381, 433, 705, 789, 934, 1065
Alw26I GTCTC 2 cut(s) 455, 1043
AlwI GGATC 1 cut(s) 395
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 639, 753, 990
ApoI RAATTY 3 cut(s) 221, 271, 583
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 5 cut(s) 176, 277, 685, 884, 1024
AxyI CCTNAGG 1 cut(s) 999
BalI TGGCCA 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 656
BbvI GCAGC 3 cut(s) 626, 740, 1002
BccI CCATC 1 cut(s) 704
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 2 cut(s) 455, 1043
BfmI CTRYAG 1 cut(s) 988
BisI GCNGC 3 cut(s) 640, 754, 991
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 3 cut(s) 641, 755, 992
Bme1390I CCNGG 1 cut(s) 738
BmgBI CACGTC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 2 cut(s) 161, 397
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu1102I GCTNAGC 1 cut(s) 930
BpuMI CCSGG 1 cut(s) 738
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 1035
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 901
Bse21I CCTNAGG 1 cut(s) 999
BseDI CCNNGG 1 cut(s) 1035
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 355, 901
BseMII CTCAG 3 cut(s) 783, 921, 990
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 3 cut(s) 626, 740, 1002
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 738
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 2 cut(s) 355, 901
BsmAI GTCTC 2 cut(s) 455, 1043
BsmBI CGTCTC 1 cut(s) 1043
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 4 cut(s) 130, 387, 436, 1029
Bsp1720I GCTNAGC 1 cut(s) 930
BspACI CCGC 2 cut(s) 349, 548
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 782, 922, 991
BspHI TCATGA 3 cut(s) 390, 667, 1067
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 992
BspPI GGATC 1 cut(s) 395
BspQI GCTCTTC 2 cut(s) 423, 712
BsrGI TGTACA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 1035
BssMI GATC 4 cut(s) 130, 387, 436, 1029
BssT1I CCWWGG 1 cut(s) 1035
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 423, 712
BstAUI TGTACA 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 57, 751, 995
BstDEI CTNAG 4 cut(s) 15, 769, 930, 999
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 133, 390, 439, 1032
BstMAI GTCTC 2 cut(s) 455, 1043
BstMBI GATC 4 cut(s) 130, 387, 436, 1029
BstMWI GCNNNNNNNGC 1 cut(s) 645
BstNSI RCATGY 2 cut(s) 59, 997
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 1 cut(s) 988
BstV1I GCAGC 3 cut(s) 626, 740, 1002
BstV2I GAAGAC 1 cut(s) 656
Bsu36I CCTNAGG 1 cut(s) 999
BsuRI GGCC 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 281
BtrI CACGTC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 27, 525
Cac8I GCNNGC 3 cut(s) 57, 751, 995
CciI TCATGA 3 cut(s) 390, 667, 1067
CseI GACGC 3 cut(s) 150, 650, 1060
Csp6I GTAC 3 cut(s) 146, 452, 683
CspCI CAANNNNNGTGG 2 cut(s) 314, 349
CviQI GTAC 3 cut(s) 146, 452, 683
DdeI CTNAG 4 cut(s) 15, 769, 930, 999
DpnI GATC 4 cut(s) 132, 389, 438, 1031
DpnII GATC 4 cut(s) 130, 387, 436, 1029
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 423, 712
EarI CTCTTC 2 cut(s) 423, 712
Eco130I CCWWGG 1 cut(s) 1035
Eco81I CCTNAGG 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 1035
ErhI CCWWGG 1 cut(s) 1035
Esp3I CGTCTC 1 cut(s) 1043
FaqI GGGAC 1 cut(s) 720
FblI GTMKAC 2 cut(s) 402, 606
Fnu4HI GCNGC 3 cut(s) 640, 754, 991
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 640, 754, 991
GluI GCNGC 3 cut(s) 640, 754, 991
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 738
HgaI GACGC 3 cut(s) 150, 650, 1060
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 787
HinfI GANTC 3 cut(s) 500, 716, 982
HpaII CCGG 1 cut(s) 738
HphI GGTGA 5 cut(s) 176, 277, 685, 884, 1024
Hpy166II GTNNAC 5 cut(s) 192, 403, 452, 523, 607
Hpy188I TCNGA 1 cut(s) 387
Hpy8I GTNNAC 5 cut(s) 192, 403, 452, 523, 607
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 4 cut(s) 133, 493, 919, 937
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 3 cut(s) 354, 395, 914
HpyCH4V TGCA 7 cut(s) 55, 174, 410, 642, 648, 756, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 645
HpyF3I CTNAG 4 cut(s) 15, 769, 930, 999
HpySE526I ACGT 3 cut(s) 354, 395, 914
Kzo9I GATC 4 cut(s) 130, 387, 436, 1029
LguI GCTCTTC 2 cut(s) 423, 712
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 3 cut(s) 626, 740, 1002
LweI GCATC 2 cut(s) 161, 397
MaeII ACGT 3 cut(s) 354, 395, 914
MalI GATC 4 cut(s) 132, 389, 438, 1031
MboI GATC 4 cut(s) 130, 387, 436, 1029
MboII GAAGA 5 cut(s) 83, 247, 440, 656, 699
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 9 cut(s) 179, 211, 221, 271, 556, 583, 656, 908, 1041
MluNI TGGCCA 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 7 cut(s) 249, 256, 352, 501, 563, 604, 994
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 9 cut(s) 20, 314, 540, 836, 858, 911, 948, 1005, 1044
MslI CAYNNNNRTG 1 cut(s) 897
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 1 cut(s) 738
MwoI GCNNNNNNNGC 1 cut(s) 645
NciI CCSGG 1 cut(s) 738
NdeII GATC 4 cut(s) 130, 387, 436, 1029
NlaIV GGNNCC 1 cut(s) 339
NspI RCATGY 2 cut(s) 59, 997
PaeI GCATGC 2 cut(s) 59, 997
PagI TCATGA 3 cut(s) 390, 667, 1067
PciSI GCTCTTC 2 cut(s) 423, 712
PfeI GAWTC 3 cut(s) 500, 716, 982
Pfl23II CGTACG 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 901
PkrI GCNGC 3 cut(s) 641, 755, 992
Ppu21I YACGTR 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 398
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 339
PstI CTGCAG 1 cut(s) 992
RsaI GTAC 3 cut(s) 147, 453, 684
RsaNI GTAC 3 cut(s) 146, 452, 683
RseI CAYNNNNRTG 1 cut(s) 897
SapI GCTCTTC 2 cut(s) 423, 712
SaqAI TTAA 9 cut(s) 20, 314, 540, 836, 858, 911, 948, 1005, 1044
SatI GCNGC 3 cut(s) 640, 754, 991
Sau3AI GATC 4 cut(s) 130, 387, 436, 1029
ScrFI CCNGG 1 cut(s) 738
SfaNI GCATC 2 cut(s) 161, 397
SfcI CTRYAG 1 cut(s) 988
SmiMI CAYNNNNRTG 1 cut(s) 897
SphI GCATGC 2 cut(s) 59, 997
Sse9I AATT 9 cut(s) 179, 211, 221, 271, 556, 583, 656, 908, 1041
SsiI CCGC 2 cut(s) 349, 548
SspI AATATT 1 cut(s) 811
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 1 cut(s) 1035
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 3 cut(s) 357, 398, 917
TaqI TCGA 2 cut(s) 699, 966
TasI AATT 9 cut(s) 179, 211, 221, 271, 556, 583, 656, 908, 1041
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 3 cut(s) 500, 716, 982
Tru1I TTAA 9 cut(s) 20, 314, 540, 836, 858, 911, 948, 1005, 1044
Tru9I TTAA 9 cut(s) 20, 314, 540, 836, 858, 911, 948, 1005, 1044
TscAI CASTG 2 cut(s) 34, 525
TseI GCWGC 3 cut(s) 639, 753, 990
TspDTI ATGAA 7 cut(s) 234, 248, 284, 475, 542, 621, 656
TspRI CASTG 2 cut(s) 34, 525
Van91I CCANNNNNTGG 1 cut(s) 901
XapI RAATTY 3 cut(s) 221, 271, 583
XceI RCATGY 2 cut(s) 59, 997
XmiI GTMKAC 2 cut(s) 402, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.