MD12G1026800.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000241
Physical Location & Seq
Forward (+)
3050729 .. 3053174
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1026800.v1.1.491

Sequence Viewer

Length: 687 bp
ATGTTTGCTCCAAAACTCAAATATTTAGAATGGAGAGGGCATCTGACGAATCAGGCAAACTTGGGACAGCTAGAATGTTTAGAAAAAGCTCTTATTTGCCTGGAGCCTAAGGCAGATGACTCTGACAAACAGATTAAGCATTTTTGCGTTTTACACAGGGTTGAACATCTTGTTTTAAATGCAGCGACCTTCAAGGCTTTGTTCAGGGAAGGATCCACGCATGCTCAGTTTGATCATGTTTCTAATTTGCGATTGAATCTAAGGAGGTTTTCTGATGATATCTTTCCTGCAGTGGTCTCACTATTGAAAGGATTGCATAATTTGTGTACTTTGTACATAAGTTGTTGTGCTGTCCCAAGTTTTCTGCACCCTCAACGTGATGTATCTGGGTTTGGTAAGGCATACTGGAAGCTACAGAATCTGGATTTTGTTGATCAGATTAAGAAGGTTACCCTAGTGCTGGATGGGTCTAATAATGGGATTGACTTTGCACGGTATATACTCGAGCATGCCAAGAACCTGGAGCTAATGGACATACAATATTTATTGAATCCGTCTGACGATGCTATACAGAAGCTAAATGAAAGTAAGAAGATGTCCAAGGCCACAGTTATCTTTGAGGAAGACTTCGTGGAAGACTCCGATAAAAACTTGGAAAACTTCGATGAAGACTTCGAGGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

229

Amino Acids

26.22

Weight (kDa)

5.37

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 207, 220
AfaI GTAC 2 cut(s) 328, 335
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 5 cut(s) 164, 193, 256, 307, 550
AjnI CCWGG 2 cut(s) 99, 519
AluBI AGCT 5 cut(s) 70, 89, 412, 526, 577
AluI AGCT 5 cut(s) 70, 89, 412, 526, 577
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 207, 220
AlwNI CAGNNNCTG 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 212
BbsI GAAGAC 3 cut(s) 630, 642, 675
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 458
BciT130I CCWGG 2 cut(s) 101, 521
BclI TGATCA 2 cut(s) 232, 433
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 71, 455
BfmI CTRYAG 2 cut(s) 288, 413
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 101, 521
BmeT110I CYCGRG 1 cut(s) 503
BmiI GGNNCC 2 cut(s) 105, 214
BmrFI CCNGG 2 cut(s) 101, 521
BmsI GCATC 2 cut(s) 49, 553
BpiI GAAGAC 3 cut(s) 630, 642, 675
BpmI CTGGAG 2 cut(s) 122, 542
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 101, 521
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 410
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 503
BslFI GGGAC 2 cut(s) 78, 338
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 2 cut(s) 78, 338
BsnI GGCC 1 cut(s) 605
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 212, 232, 433
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 105, 214
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 2 cut(s) 207, 220
BspTNI GGTCTC 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 212, 232, 433
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 101, 521
Bst4CI ACNGT 2 cut(s) 495, 610
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 222, 510
BstDEI CTNAG 3 cut(s) 108, 225, 260
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 3 cut(s) 215, 235, 436
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 3 cut(s) 212, 232, 433
BstNI CCWGG 2 cut(s) 101, 521
BstNSI RCATGY 2 cut(s) 224, 512
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 99, 519
BstSFI CTRYAG 2 cut(s) 288, 413
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 3 cut(s) 630, 642, 675
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 605
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 222, 510
CaiI CAGNNNCTG 1 cut(s) 421
Csp6I GTAC 2 cut(s) 327, 334
CviAII CATG 3 cut(s) 221, 236, 509
CviJI RGCY 8 cut(s) 70, 89, 106, 197, 412, 526, 577, 605
CviKI_1 RGCY 8 cut(s) 70, 89, 106, 197, 412, 526, 577, 605
CviQI GTAC 2 cut(s) 327, 334
DdeI CTNAG 3 cut(s) 108, 225, 260
DpnI GATC 3 cut(s) 214, 234, 435
DpnII GATC 3 cut(s) 212, 232, 433
DraI TTTAAA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 600
Eco31I GGTCTC 1 cut(s) 301
Eco32I GATATC 1 cut(s) 280
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 99, 519
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 3 cut(s) 224, 239, 512
FaqI GGGAC 2 cut(s) 78, 338
FatI CATG 3 cut(s) 220, 235, 508
FbaI TGATCA 2 cut(s) 232, 433
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 71, 455
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 2 cut(s) 122, 542
HaeIII GGCC 1 cut(s) 605
Hin1II CATG 3 cut(s) 224, 239, 512
HinfI GANTC 6 cut(s) 49, 119, 256, 418, 550, 638
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 6 cut(s) 45, 124, 274, 438, 559, 643
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 3 cut(s) 199, 203, 439
HpyCH4III ACNGT 2 cut(s) 495, 610
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 5 cut(s) 182, 290, 316, 367, 491
HpyF3I CTNAG 3 cut(s) 108, 225, 260
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 3 cut(s) 224, 239, 512
Ksp22I TGATCA 2 cut(s) 232, 433
Kzo9I GATC 3 cut(s) 212, 232, 433
LmnI GCTCC 3 cut(s) 13, 103, 523
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 49, 553
MaeI CTAG 2 cut(s) 71, 455
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 214, 234, 435
MboI GATC 3 cut(s) 212, 232, 433
MboII GAAGA 4 cut(s) 604, 635, 647, 680
MflI RGATCY 1 cut(s) 212
MluCI AATT 2 cut(s) 244, 319
MlyI GAGTC 2 cut(s) 113, 632
MnlI CCTC 5 cut(s) 29, 258, 381, 613, 670
MseI TTAA 3 cut(s) 135, 176, 441
MspR9I CCNGG 2 cut(s) 101, 521
MvaI CCWGG 2 cut(s) 101, 521
NdeII GATC 3 cut(s) 212, 232, 433
NlaIII CATG 3 cut(s) 224, 239, 512
NlaIV GGNNCC 2 cut(s) 105, 214
NspI RCATGY 2 cut(s) 224, 512
PaeI GCATGC 2 cut(s) 224, 512
PaeR7I CTCGAG 1 cut(s) 503
PfeI GAWTC 4 cut(s) 49, 256, 418, 550
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 113, 632
PpsI GAGTC 2 cut(s) 113, 632
Psp6I CCWGG 2 cut(s) 99, 519
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 2 cut(s) 99, 519
PspN4I GGNNCC 2 cut(s) 105, 214
PspXI VCTCGAGB 1 cut(s) 503
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 2 cut(s) 328, 335
RsaNI GTAC 2 cut(s) 327, 334
SaqAI TTAA 3 cut(s) 135, 176, 441
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 212, 232, 433
SchI GAGTC 2 cut(s) 113, 632
ScrFI CCNGG 2 cut(s) 101, 521
SfaNI GCATC 2 cut(s) 49, 553
SfcI CTRYAG 2 cut(s) 288, 413
Sfr274I CTCGAG 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 2 cut(s) 224, 512
Sse9I AATT 2 cut(s) 244, 319
SspI AATATT 2 cut(s) 23, 542
SspMI CTAG 2 cut(s) 71, 455
StyD4I CCNGG 2 cut(s) 99, 519
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 495, 610
TaiI ACGT 1 cut(s) 379
TaqI TCGA 3 cut(s) 504, 663, 675
TasI AATT 2 cut(s) 244, 319
TatI WGTACW 2 cut(s) 326, 333
TfiI GAWTC 4 cut(s) 49, 256, 418, 550
Tru1I TTAA 3 cut(s) 135, 176, 441
Tru9I TTAA 3 cut(s) 135, 176, 441
TscAI CASTG 1 cut(s) 297
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 597, 681
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 1 cut(s) 297
XceI RCATGY 2 cut(s) 224, 512
XhoI CTCGAG 1 cut(s) 503
XspI CTAG 2 cut(s) 71, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.