Rroxscaffold_6G00407470

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000241
Physical Location & Seq
Reverse (-)
30124506 .. 30126745
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407470.1

Sequence Viewer

Length: 1098 bp
ATGGCGTCGATACACTATGCAGTAAGGTGTAATGTGGAAGTGCTTGATCTTGAGATCTCTATATTTGAGGATGAAACACCATTAGCATTTCCATGTTGCATCTTTCTGTGTGAATCTTTGAGGTCCCTATCGGTGGATATGAATTGTAAGATTCAAACACCCTCCTTCACTTTCTTCTCTAGTCTCACATGCTTGGAGCTGACAAACGTTAAAATAGAGGAAGAGTCATTTTTCAAATGGATCTCACAATCCTGCGAATGCATTGAGGTATTGTATCTTGAGGATGTTTATGGGATAAAAAATATCAACATTGAAAGCTCGTCTTTGAAATCATTATATTTTGAGTATACTTTCAATCAGACTAGCATCTGTCACCTTAATGTATCAGGTGAGAAACTTGACAGCATAACTATTGTCTGGGGATTTGATTCACCTAGCAACAAATCGTTTAATGTTTCTGCTCCAAACCTTAAAAGCTTCTATTGGGTGGGGAATTTGATGATTCACTCATATATGAGAGAGCTGGTAGGCTTAGAAGAAGTTGGGTTTTATCTAGAGCCTGAAGAAGATGAGATTGACCATGTCCTAGATGATATCGGCACTTCACACAAGCGTAGCTTTCTTGTTATAAAGGAAGATGCCATGAAGGAACTATACAAGAGAGGAATTTCGCCAACTTCGTTTGGTAATATTTGTTATTTGCGTTTGCATATTGGGAGCTTCGTCAGTGACTTAGTCCCATCAATGGTGTTTCTTTTCGGAACAATGACAAATCTGAGTACTTTATACATCAAGTCTACTCCGCCTTTATACGACTTCGGATCTAATACATCTGGTTTCAATATGGGATACTGGGAGCAGCAAAACCTTGGTTTCATTTATAAGCTTAAAGAGGTTACGATCGAGCTTTCCCACGGATCTAATGGAATGGAGTTAGCAAGATATGTTCTCGAGCATGCTCAGTGTTTGGAGAAGATGATCGTAGTTTATCTACCCCACCAGTGTGATATTGTTAAACGGATGTTAGCTAGAAGCAAGATGATTTCTAGTGGCATTGTTGTCTTAAAGGAAAATCGATGTAAAAGAAAGCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

365

Amino Acids

41.77

Weight (kDa)

5.22

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 16 - 119 2.6e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 629, 882
AccI GTMKAC 2 cut(s) 347, 797
AciI CCGC 1 cut(s) 803
AclI AACGTT 1 cut(s) 207
AclWI GGATC 3 cut(s) 248, 829, 925
AcsI RAATTY 2 cut(s) 493, 666
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 133, 745
AgsI TTSAA 6 cut(s) 155, 235, 314, 328, 355, 841
AleI CACNNNNGTG 1 cut(s) 1002
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 3 cut(s) 248, 829, 925
Ama87I CYCGRG 1 cut(s) 950
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 2 cut(s) 493, 666
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 365, 401, 423
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbvI GCAGC 1 cut(s) 871
BccI CCATC 1 cut(s) 748
BciVI GTATCC 1 cut(s) 842
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 7 cut(s) 180, 363, 435, 554, 587, 1029, 1047
BfuI GTATCC 1 cut(s) 842
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 860
BlsI GCNGC 1 cut(s) 861
BmcAI AGTACT 1 cut(s) 781
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 862
BmsI GCATC 3 cut(s) 108, 375, 628
BmuI ACTGGG 1 cut(s) 862
BpuEI CTTGAG 2 cut(s) 71, 299
Bsa29I ATCGAT 1 cut(s) 1075
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 868, 913
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 745
Bse1I ACTGG 2 cut(s) 857, 1000
BseCI ATCGAT 1 cut(s) 1075
BseDI CCNNGG 2 cut(s) 868, 913
BseGI GGATG 3 cut(s) 76, 289, 1026
BseLI CCNNNNNNNGG 2 cut(s) 133, 745
BseMII CTCAG 2 cut(s) 767, 974
BseNI ACTGG 2 cut(s) 857, 1000
BseXI GCAGC 1 cut(s) 871
Bsh1285I CGRYCG 1 cut(s) 903
BshVI ATCGAT 1 cut(s) 1075
BsiEI CGRYCG 1 cut(s) 903
BsiHKCI CYCGRG 1 cut(s) 950
BslFI GGGAC 2 cut(s) 109, 722
BslI CCNNNNNNNGG 2 cut(s) 133, 745
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 109, 722
BsmI GAATGC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 950
Bsp143I GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
BspACI CCGC 1 cut(s) 803
BspCNI CTCAG 2 cut(s) 768, 973
BspDI ATCGAT 1 cut(s) 1075
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 3 cut(s) 248, 829, 925
BsrI ACTGG 2 cut(s) 857, 1000
BssECI CCNNGG 2 cut(s) 868, 913
BssMI GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
BssNAI GTATAC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 868
Bst1107I GTATAC 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 957
BstDEI CTNAG 4 cut(s) 532, 733, 776, 960
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 3 cut(s) 76, 289, 1026
BstKTI GATC 7 cut(s) 49, 57, 243, 824, 903, 920, 981
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
BstMCI CGRYCG 1 cut(s) 903
BstNSI RCATGY 2 cut(s) 192, 959
BstV1I GCAGC 1 cut(s) 871
BstX2I RGATCY 4 cut(s) 54, 240, 821, 917
BstYI RGATCY 4 cut(s) 54, 240, 821, 917
BstZ17I GTATAC 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 1075
BsuI GTATCC 1 cut(s) 842
BsuTUI ATCGAT 1 cut(s) 1075
BtgI CCRYGG 1 cut(s) 913
BtsCI GGATG 3 cut(s) 76, 289, 1026
BtsIMutI CAGTG 3 cut(s) 733, 968, 1007
Cac8I GCNNGC 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 1075
Csp6I GTAC 1 cut(s) 780
CviAII CATG 5 cut(s) 93, 189, 581, 643, 956
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 4 cut(s) 532, 733, 776, 960
DpnI GATC 7 cut(s) 48, 56, 242, 823, 902, 919, 980
DpnII GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 868
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 123
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 868
FaeI CATG 5 cut(s) 96, 192, 584, 646, 959
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 602, 634
FaqI GGGAC 2 cut(s) 109, 722
FatI CATG 5 cut(s) 92, 188, 580, 642, 955
FblI GTMKAC 2 cut(s) 347, 797
Fnu4HI GCNGC 1 cut(s) 860
FokI GGATG 3 cut(s) 83, 296, 1033
Fsp4HI GCNGC 1 cut(s) 860
FspBI CTAG 7 cut(s) 180, 363, 435, 554, 587, 1029, 1047
GluI GCNGC 1 cut(s) 860
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 96, 192, 584, 646, 959
HindIII AAGCTT 2 cut(s) 475, 884
HinfI GANTC 5 cut(s) 113, 151, 224, 428, 502
HphI GGTGA 3 cut(s) 365, 401, 423
Hpy166II GTNNAC 2 cut(s) 348, 798
Hpy188I TCNGA 5 cut(s) 360, 761, 777, 821, 1097
Hpy188III TCNNGA 4 cut(s) 50, 278, 554, 950
Hpy8I GTNNAC 2 cut(s) 348, 798
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 175, 640
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 20, 99, 261, 709
HpyF3I CTNAG 4 cut(s) 532, 733, 776, 960
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 96, 192, 584, 646, 959
Kzo9I GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
LmnI GCTCC 4 cut(s) 196, 466, 717, 856
LpnPI CCDG 9 cut(s) 265, 372, 403, 509, 573, 819, 838, 1013, 1076
Lsp1109I GCAGC 1 cut(s) 871
LweI GCATC 3 cut(s) 108, 375, 628
MaeI CTAG 7 cut(s) 180, 363, 435, 554, 587, 1029, 1047
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 371, 728, 895
MalI GATC 7 cut(s) 48, 56, 242, 823, 902, 919, 980
MboI GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
MboII GAAGA 7 cut(s) 166, 233, 548, 575, 578, 647, 985
MflI RGATCY 4 cut(s) 54, 240, 821, 917
MluCI AATT 3 cut(s) 142, 493, 666
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 8 cut(s) 61, 114, 172, 211, 259, 274, 656, 886
Mph1103I ATGCAT 1 cut(s) 263
MseI TTAA 7 cut(s) 210, 378, 450, 471, 888, 1014, 1064
MslI CAYNNNNRTG 3 cut(s) 91, 378, 1002
Mva1269I GAATGC 1 cut(s) 263
NdeII GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
NlaIII CATG 5 cut(s) 96, 192, 584, 646, 959
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 371, 728
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 2 cut(s) 192, 959
OliI CACNNNNGTG 1 cut(s) 1002
PaeI GCATGC 1 cut(s) 959
PaeR7I CTCGAG 1 cut(s) 950
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 4 cut(s) 113, 151, 428, 502
PflFI GACNNNGTC 2 cut(s) 581, 734
PkrI GCNGC 1 cut(s) 861
Ple19I CGATCG 1 cut(s) 903
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 123
PsiI TTATAA 2 cut(s) 629, 882
Psp1406I AACGTT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 123
PspPPI RGGWCCY 1 cut(s) 123
PsuI RGATCY 4 cut(s) 54, 240, 821, 917
PsyI GACNNNGTC 2 cut(s) 581, 734
PvuI CGATCG 1 cut(s) 903
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 3 cut(s) 91, 378, 1002
SaqAI TTAA 7 cut(s) 210, 378, 450, 471, 888, 1014, 1064
SatI GCNGC 1 cut(s) 860
Sau3AI GATC 7 cut(s) 46, 54, 240, 821, 900, 917, 978
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 1 cut(s) 233
SfaNI GCATC 3 cut(s) 108, 375, 628
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 3 cut(s) 91, 378, 1002
SmlI CTYRAG 3 cut(s) 50, 278, 950
SmoI CTYRAG 3 cut(s) 50, 278, 950
SphI GCATGC 1 cut(s) 959
Sse9I AATT 3 cut(s) 142, 493, 666
SsiI CCGC 1 cut(s) 803
SspI AATATT 1 cut(s) 691
SspMI CTAG 7 cut(s) 180, 363, 435, 554, 587, 1029, 1047
StyI CCWWGG 1 cut(s) 868
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 8, 903, 951, 1075
TasI AATT 3 cut(s) 142, 493, 666
TatI WGTACW 1 cut(s) 779
TfiI GAWTC 4 cut(s) 113, 151, 428, 502
Tru1I TTAA 7 cut(s) 210, 378, 450, 471, 888, 1014, 1064
Tru9I TTAA 7 cut(s) 210, 378, 450, 471, 888, 1014, 1064
TscAI CASTG 3 cut(s) 733, 968, 1007
TseFI GTSAC 2 cut(s) 371, 728
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 2 cut(s) 371, 728
TspDTI ATGAA 4 cut(s) 87, 155, 659, 865
TspGWI ACGGA 2 cut(s) 930, 1033
TspRI CASTG 3 cut(s) 733, 968, 1007
Tth111I GACNNNGTC 2 cut(s) 581, 734
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 2 cut(s) 493, 666
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 2 cut(s) 192, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 920
XhoI CTCGAG 1 cut(s) 950
XmiI GTMKAC 2 cut(s) 347, 797
XspI CTAG 7 cut(s) 180, 363, 435, 554, 587, 1029, 1047
ZrmI AGTACT 1 cut(s) 781
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.