RchiOBHm_Chr3g0474161

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000241
Physical Location & Seq
Forward (+)
19883852 .. 19884909
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43980

Sequence Viewer

Length: 270 bp
ATGTGTTGTGGGTTTAATATGGGATACTGGAAGCTGCAAAACACTGCTTTTATTTATCAGCTTAAGGAGGTTACCATAGAGCTTTCCCATGGGTCTAATGGAATCGAGTTTGCTAGTTATATCCTTGACCATGCTCAGAATTTGAATAAAATGACGATTGTGCATTCACCACAGCAGTCTAAAGCTATGAGTAAGTTAAAGAAAAGCAAGATGGCTTCCAACATCACACTTGACTTTCAGGAAGATGAAAAAAAAGGACCTCCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

7.78

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 262
AcsI RAATTY 1 cut(s) 139
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 4 cut(s) 34, 61, 82, 185
AluI AGCT 4 cut(s) 34, 61, 82, 185
Aor13HI TCCGGA 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 205
BciVI GTATCC 1 cut(s) 17
BfaI CTAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 263
BsmI GAATGC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 262
BspTI CTTAAG 1 cut(s) 62
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
BstAFI CTTAAG 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 88
BstEII GGTNACC 1 cut(s) 70
BstPI GGTNACC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 2 cut(s) 89, 131
CviJI RGCY 5 cut(s) 34, 61, 82, 185, 215
CviKI_1 RGCY 5 cut(s) 34, 61, 82, 185, 215
DdeI CTNAG 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 92, 134
FaiI YATR 6 cut(s) 20, 77, 90, 120, 132, 188
FatI CATG 2 cut(s) 88, 130
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 35
HapII CCGG 1 cut(s) 263
Hin1II CATG 2 cut(s) 92, 134
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 239, 263
HpyCH4V TGCA 2 cut(s) 37, 163
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 92, 134
Kpn2I TCCGGA 1 cut(s) 262
LpnPI CCDG 2 cut(s) 13, 224
Lsp1109I GCAGC 1 cut(s) 21
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 1 cut(s) 254
MluCI AATT 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 2 cut(s) 61, 270
MroI TCCGGA 1 cut(s) 262
MseI TTAA 3 cut(s) 15, 63, 197
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 88
NlaIII CATG 2 cut(s) 92, 134
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
PspEI GGTNACC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
SaqAI TTAA 3 cut(s) 15, 63, 197
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 257
SetI ASST 6 cut(s) 36, 63, 72, 84, 187, 262
SgeI CNNG 9 cut(s) 40, 101, 118, 126, 137, 143, 220, 242, 251
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 139
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 15, 63, 197
Tru9I TTAA 3 cut(s) 15, 63, 197
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.