FvH4_6g33920

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
26864151 .. 26864928
778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33920.t1

Sequence Viewer

Length: 570 bp
ATGCTTGGAAGAAGTTTGCGGTTCTATCTAGATCCTGGAGATGAGTTTGAAGATGTACTACAGGATCTCGGCCCTTCATACCGGCGTAGCTTTCTTATTCTAAATGAAAATGCCATGAAGGGACTGTATAATAAAGGAATCTTCCCAACTTTGTTTGGTGATATTTGTTATTTACAAGTGCATATTGGGAGCTTCAGCAATGACTTAGTCCCATCTATGGTGTTTCTTTTCACAGCACTGCCTAATTTGAGTACTCTATACATCAAGTCTATTCCACCTTTACTCGACTTCGGATCTAATACATCTGGTTTCAAGGTTGGCTACTGGGAGCAGCAAAAACTTGGTTTTATTTGTAAGCTTAAAGAGGTTACTATTGAGCTTTCCAATGGATCCAATGGAATGGAGTTCGCAAGTTATATGCTCCATAATGCTCAGTGTTTGGAGAAAATGGTCATAGTTTATCTACCTCACCAGAGTAAGATTGTTAAAGAGATGTTAGATAGAAGCAACACAATTTCTACTGGCATAGTCGTTTTGAAGGAAAATCGATGTAAAAGAAAGCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

190

Amino Acids

21.46

Weight (kDa)

8.29

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 5 cut(s) 26, 72, 301, 384, 397
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 2 cut(s) 57, 253
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 3 cut(s) 50, 313, 538
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 5 cut(s) 90, 192, 358, 379, 562
AluI AGCT 5 cut(s) 90, 192, 358, 379, 562
AlwI GGATC 5 cut(s) 26, 72, 301, 384, 397
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 170, 461
BamHI GGATCC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 547
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 329, 526
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 329, 526
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 547
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 2 cut(s) 135, 194
BslI CCNNNNNNNGG 1 cut(s) 217
BsmFI GGGAC 2 cut(s) 135, 194
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 4 cut(s) 31, 64, 293, 389
BspACI CCGC 1 cut(s) 19
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 5 cut(s) 26, 72, 301, 384, 397
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 81
BsrI ACTGG 2 cut(s) 329, 526
BssAI RCCGGY 1 cut(s) 81
BssMI GATC 4 cut(s) 31, 64, 293, 389
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 205, 432
BstKTI GATC 4 cut(s) 34, 67, 296, 392
BstMBI GATC 4 cut(s) 31, 64, 293, 389
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 4 cut(s) 31, 64, 293, 389
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 4 cut(s) 31, 64, 293, 389
Bsu15I ATCGAT 1 cut(s) 547
BsuRI GGCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 2 cut(s) 236, 440
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 547
Csp6I GTAC 2 cut(s) 56, 252
CviAII CATG 1 cut(s) 115
CviJI RGCY 7 cut(s) 72, 90, 192, 321, 358, 379, 562
CviKI_1 RGCY 7 cut(s) 72, 90, 192, 321, 358, 379, 562
CviQI GTAC 2 cut(s) 56, 252
DdeI CTNAG 2 cut(s) 205, 432
DpnI GATC 4 cut(s) 33, 66, 295, 391
DpnII GATC 4 cut(s) 31, 64, 293, 389
Eco57I CTGAAG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 118
FaqI GGGAC 2 cut(s) 135, 194
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 82
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 170, 461
Hpy188I TCNGA 2 cut(s) 293, 569
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 84, 112, 532
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 205, 432
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 4 cut(s) 31, 64, 293, 389
LmnI GCTCC 3 cut(s) 189, 328, 426
LpnPI CCDG 9 cut(s) 21, 47, 48, 95, 291, 310, 485, 507, 548
Lsp1109I GCAGC 1 cut(s) 343
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 367
MalI GATC 4 cut(s) 33, 66, 295, 391
MboI GATC 4 cut(s) 31, 64, 293, 389
MboII GAAGA 3 cut(s) 21, 62, 133
MflI RGATCY 4 cut(s) 31, 64, 293, 389
MluCI AATT 2 cut(s) 244, 513
MnlI CCTC 2 cut(s) 358, 477
MseI TTAA 2 cut(s) 360, 486
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NdeII GATC 4 cut(s) 31, 64, 293, 389
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 391
NmeAIII GCCGAG 1 cut(s) 48
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 4 cut(s) 31, 64, 293, 389
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 2 cut(s) 57, 253
RsaNI GTAC 2 cut(s) 56, 252
SaqAI TTAA 2 cut(s) 360, 486
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 4 cut(s) 31, 64, 293, 389
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 36
SetI ASST 9 cut(s) 92, 194, 280, 318, 360, 369, 381, 469, 564
SfcI CTRYAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 244, 513
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 285, 547
TasI AATT 2 cut(s) 244, 513
TatI WGTACW 2 cut(s) 55, 251
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 360, 486
Tru9I TTAA 2 cut(s) 360, 486
TscAI CASTG 2 cut(s) 243, 440
TseI GCWGC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 66, 120, 131
TspRI CASTG 2 cut(s) 243, 440
Tth111I GACNNNGTC 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 28
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.