Rh3CG214200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000241
Physical Location & Seq
Forward (+)
19651298 .. 19661068
9771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG214200.1

Sequence Viewer

Length: 489 bp
ATGAGACACTGGAAGCTGCAAGACCCTGCTCTTTTCAATCAGCTTAAGGAGTTTACAATAGAGCTCTGGGGAGAACCTAATGGAATTGAACTAGCGAGGTATATTCTGGAGCATGCTCAGAATTTGGAGAAAATGGTCATTGTTCACCTGCCGCAACATTCTCATGTTAAAAGGGAGTTGAGTAAAAGCAAGACGATTTCAAATGCCAAGCTTTTCTTCAGATACTGGAAGCTGCAAAACGCTGCTTTTATTTATCAGCTTAAGGAGGTTACCATAGAGCTCTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATTCTTGAACATGCTCAGAATTTGATTAAGATGACTATTGTGCATTCTCCCCGGCAGTCTAATGCTATGAGGAAGTTAAATACAAGCAAGATGACTTCCAATATCACACTTGACTTTCAGGAAGATCAAAGAAGAGGACCTCAGAAGCAAAGAGGAAGAAGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

162

Amino Acids

19.15

Weight (kDa)

10.04

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 14 - 47 6.8e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AciI CCGC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 121, 337
AcuI CTGAAG 1 cut(s) 202
AflII CTTAAG 2 cut(s) 44, 260
AgsI TTSAA 4 cut(s) 37, 89, 201, 326
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 7 cut(s) 16, 43, 64, 211, 232, 259, 280
AluI AGCT 7 cut(s) 16, 43, 64, 211, 232, 259, 280
Alw21I GWGCWC 2 cut(s) 66, 282
AlwNI CAGNNNCTG 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 16, 232, 242
ApoI RAATTY 2 cut(s) 121, 337
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 66, 282
Bbv12I GWGCWC 2 cut(s) 66, 282
BbvI GCAGC 3 cut(s) 3, 219, 229
BcnI CCSGG 1 cut(s) 370
BfaI CTAG 2 cut(s) 92, 312
BfrI CTTAAG 2 cut(s) 44, 260
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 17, 152, 233, 243
BlsI GCNGC 4 cut(s) 18, 153, 234, 244
Bme1390I CCNGG 1 cut(s) 370
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 286, 368
Bse1I ACTGG 2 cut(s) 14, 230
BseDI CCNNGG 2 cut(s) 286, 368
BseMII CTCAG 3 cut(s) 131, 347, 473
BseNI ACTGG 2 cut(s) 14, 230
BseXI GCAGC 3 cut(s) 3, 219, 229
BsiHKAI GWGCWC 2 cut(s) 66, 282
BsiSI CCGG 1 cut(s) 370
BsmI GAATGC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 66, 282
Bsp143I GATC 1 cut(s) 442
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 3 cut(s) 130, 346, 472
BspMI ACCTGC 1 cut(s) 156
BspTI CTTAAG 2 cut(s) 44, 260
BsrI ACTGG 2 cut(s) 14, 230
BssECI CCNNGG 2 cut(s) 286, 368
BssMI GATC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 445
BstAFI CTTAAG 2 cut(s) 44, 260
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 117, 333, 459
BstDSI CCRYGG 1 cut(s) 286
BstEII GGTNACC 1 cut(s) 268
BstKTI GATC 1 cut(s) 445
BstMBI GATC 1 cut(s) 442
BstNSI RCATGY 2 cut(s) 116, 332
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 3, 219, 229
BtgI CCRYGG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 7
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 455
CviAII CATG 4 cut(s) 113, 164, 287, 329
CviJI RGCY 7 cut(s) 16, 43, 64, 211, 232, 259, 280
CviKI_1 RGCY 7 cut(s) 16, 43, 64, 211, 232, 259, 280
DdeI CTNAG 3 cut(s) 117, 333, 459
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Ecl136II GAGCTC 2 cut(s) 64, 280
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 66, 282
Eco47I GGWCC 1 cut(s) 455
Eco53kI GAGCTC 2 cut(s) 64, 280
Eco57I CTGAAG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 2 cut(s) 64, 280
EcoO109I RGGNCCY 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 66, 282
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 4 cut(s) 116, 167, 290, 332
FaiI YATR 8 cut(s) 102, 114, 165, 275, 288, 318, 330, 386
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 4 cut(s) 112, 163, 286, 328
Fnu4HI GCNGC 4 cut(s) 17, 152, 233, 243
FriOI GRGCYC 2 cut(s) 66, 282
Fsp4HI GCNGC 4 cut(s) 17, 152, 233, 243
FspBI CTAG 2 cut(s) 92, 312
GluI GCNGC 4 cut(s) 17, 152, 233, 243
GsuI CTGGAG 1 cut(s) 128
HapII CCGG 1 cut(s) 370
Hin1II CATG 4 cut(s) 116, 167, 290, 332
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 370
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 54, 145
Hpy188I TCNGA 5 cut(s) 120, 221, 336, 462, 488
Hpy188III TCNNGA 3 cut(s) 107, 323, 437
Hpy8I GTNNAC 2 cut(s) 54, 145
HpyAV CCTTC 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 19, 235, 361
HpyF3I CTNAG 3 cut(s) 117, 333, 459
Hsp92II CATG 4 cut(s) 116, 167, 290, 332
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 39, 52, 92, 161, 211, 383, 422
Lsp1109I GCAGC 3 cut(s) 3, 219, 229
MaeI CTAG 2 cut(s) 92, 312
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 4 cut(s) 208, 452, 462, 486
MhlI GDGCHC 2 cut(s) 66, 282
MluCI AATT 3 cut(s) 84, 121, 337
MnlI CCTC 6 cut(s) 90, 259, 381, 446, 464, 468
MseI TTAA 5 cut(s) 45, 168, 261, 345, 395
MslI CAYNNNNRTG 1 cut(s) 162
MspCI CTTAAG 2 cut(s) 44, 260
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 370
Mva1269I GAATGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 1 cut(s) 286
NdeII GATC 1 cut(s) 442
NlaIII CATG 4 cut(s) 116, 167, 290, 332
NspI RCATGY 2 cut(s) 116, 332
PaeI GCATGC 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 156
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 4 cut(s) 18, 153, 234, 244
PpuMI RGGWCCY 1 cut(s) 455
Psp124BI GAGCTC 2 cut(s) 66, 282
Psp5II RGGWCCY 1 cut(s) 455
PspEI GGTNACC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 455
PspPPI RGGWCCY 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 2 cut(s) 66, 282
SaqAI TTAA 5 cut(s) 45, 168, 261, 345, 395
SatI GCNGC 4 cut(s) 17, 152, 233, 243
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 2 cut(s) 66, 282
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 44, 260
SmoI CTYRAG 2 cut(s) 44, 260
SphI GCATGC 1 cut(s) 116
Sse9I AATT 3 cut(s) 84, 121, 337
SsiI CCGC 1 cut(s) 152
SspMI CTAG 2 cut(s) 92, 312
SstI GAGCTC 2 cut(s) 66, 282
StyD4I CCNGG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 84, 121, 337
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 5 cut(s) 45, 168, 261, 345, 395
Tru9I TTAA 5 cut(s) 45, 168, 261, 345, 395
TscAI CASTG 1 cut(s) 14
TseI GCWGC 3 cut(s) 16, 232, 242
TspRI CASTG 1 cut(s) 14
Vha464I CTTAAG 2 cut(s) 44, 260
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 2 cut(s) 121, 337
XceI RCATGY 2 cut(s) 116, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 2 cut(s) 92, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.