Rh3BG219000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000241
Physical Location & Seq
Forward (+)
19740229 .. 19740972
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG219000.1

Sequence Viewer

Length: 555 bp
ATGTTGGATTTTATAGAGTCTGAAGAAGATGAGATTGACTATATACAGCATGTTTACAATACACACAAGCGCTTTGTTGTTCTAAATGAAGAGGCCATGAAGGGACTGTATAAGAGAGGAATCATACCACCTCTGTTTCGTAATACTTGTTATTTGTGTATGCATATTGGCAGCTTTGTTAATGACCTAGTCCCATGGATGGTCTTTCTTTTCCGAAGAATGCCTAATTTGTGTACCTTGTACATCAAGTCTACTCCACCTCTATCTGACTGCAATTCTCATCATACATGCGGGTTCTATATGGAATACTGGAAGCAGCAAAACTTCGGTTTTATACTTGAGCTTAATGAGGTTACCATTGAGCTTTCCAGAGGACTAAATGGAATTGAGATAGCAAGGTATATGCTCGAGCATGCTCAGAATTTGAAGAAAATGGTCATAGTTTGTTTACCGCAGCAGTCTGGTTTTGTTAAAAGGATGTTAGATAAAAGTAAGATGATTTCGAATGGCACAGTTGTGTTCAAGGAAAATCGACAAGAGAGAAAGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

184

Amino Acids

21.74

Weight (kDa)

8.19

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 251
AciI CCGC 2 cut(s) 291, 452
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 235, 242
AfeI AGCGCT 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 427, 523
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 4 cut(s) 174, 343, 364, 547
AluI AGCT 4 cut(s) 174, 343, 364, 547
Ama87I CYCGRG 1 cut(s) 407
Aor51HI AGCGCT 1 cut(s) 71
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 171, 316, 454
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 407
BbvI GCAGC 3 cut(s) 183, 328, 466
BccI CCATC 1 cut(s) 193
BfaI CTAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 3 cut(s) 172, 317, 455
BlsI GCNGC 3 cut(s) 173, 318, 456
BmeT110I CYCGRG 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 204, 483
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 183, 328, 466
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 407
BslFI GGGAC 2 cut(s) 117, 176
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 117, 176
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 291, 452
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 503
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 108, 514
Bst6I CTCTTC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 2 cut(s) 204, 483
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstNSI RCATGY 3 cut(s) 53, 291, 416
BstPI GGTNACC 1 cut(s) 352
BstV1I GCAGC 3 cut(s) 183, 328, 466
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 204, 483
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 234, 241
CviAII CATG 5 cut(s) 50, 97, 195, 288, 413
CviJI RGCY 5 cut(s) 95, 174, 343, 364, 547
CviKI_1 RGCY 5 cut(s) 95, 174, 343, 364, 547
CviQI GTAC 2 cut(s) 234, 241
DdeI CTNAG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 5 cut(s) 53, 100, 198, 291, 416
FaqI GGGAC 2 cut(s) 117, 176
FatI CATG 5 cut(s) 49, 96, 194, 287, 412
FauI CCCGC 1 cut(s) 284
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 172, 317, 455
FokI GGATG 2 cut(s) 211, 490
Fsp4HI GCNGC 3 cut(s) 172, 317, 455
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 172, 317, 455
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 72
Hin1II CATG 5 cut(s) 53, 100, 198, 291, 416
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 2 cut(s) 17, 120
Hpy166II GTNNAC 4 cut(s) 55, 234, 252, 449
Hpy188I TCNGA 4 cut(s) 22, 215, 268, 420
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 4 cut(s) 55, 234, 252, 449
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 108, 514
HpyCH4V TGCA 2 cut(s) 163, 273
HpyF3I CTNAG 1 cut(s) 417
Hsp92II CATG 5 cut(s) 53, 100, 198, 291, 416
HspAI GCGC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 295, 382, 447, 533
Lsp1109I GCAGC 3 cut(s) 183, 328, 466
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 5 cut(s) 35, 38, 101, 228, 439
MluCI AATT 4 cut(s) 226, 274, 384, 421
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 6 cut(s) 85, 110, 141, 270, 343, 365
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 3 cut(s) 180, 345, 471
MslI CAYNNNNRTG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 194
NlaIII CATG 5 cut(s) 53, 100, 198, 291, 416
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 3 cut(s) 53, 291, 416
NspV TTCGAA 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 515
PaeI GCATGC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 407
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 173, 318, 456
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 352
PspXI VCTCGAGB 1 cut(s) 407
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 2 cut(s) 235, 242
RsaNI GTAC 2 cut(s) 234, 241
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 3 cut(s) 180, 345, 471
SatI GCNGC 3 cut(s) 172, 317, 455
SchI GAGTC 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 407
SfuI TTCGAA 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 2 cut(s) 338, 407
SmoI CTYRAG 2 cut(s) 338, 407
SphI GCATGC 1 cut(s) 416
Sse9I AATT 4 cut(s) 226, 274, 384, 421
SsiI CCGC 2 cut(s) 291, 452
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 108, 514
TaqI TCGA 3 cut(s) 408, 503, 532
TasI AATT 4 cut(s) 226, 274, 384, 421
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 3 cut(s) 180, 345, 471
Tru9I TTAA 3 cut(s) 180, 345, 471
TseI GCWGC 3 cut(s) 171, 316, 454
TspDTI ATGAA 2 cut(s) 102, 113
Tth111I GACNNNGTC 1 cut(s) 188
XapI RAATTY 1 cut(s) 421
XceI RCATGY 3 cut(s) 53, 291, 416
XhoI CTCGAG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.