Rh3BG216500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000241
Physical Location & Seq
Forward (+)
19574810 .. 19575865
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG216500.1

Sequence Viewer

Length: 1056 bp
ATGATGGAGCAGAAGCGTATGTTATTGGCTACTGGAAGTTGTCAGGGTGAAGGACCCTGTACTGTGAATATGATTGACAGATTTAGCAATCTTCCGGAGGGAGTTTTTCATCACATTCTTTCAAAATTCAGTATTAAAGACCTTGCCCGATTCTGCTGTGTCTCCAAACGATGGAGAGAATTATGCCTGTCGTCTCCATCGGTGGAATTTTGTGGATTTAGTGAAGATGGAATTATGGATATGGCATGTGAGCTTAGGTTGAAGTTGGTCAATGCATTGGATAGGTTCTTGCTTAGTCGTGGGGATAATGAGATGAAGAGCTTTGTTCTTTTTTGGGATGGTCACAGTGATGAAGAGCTTGACGAAGCATGTTTCTGTGTTAATGAGAATTTCCGAATAATCACCTGGATCCAGAATGCTGTGAGGTGTAAAGTTGAAAAGGTTTATCTTGACGTCACCTTTTTTGATTATGAGGGGGAGCCATTGGCATTTCCATCTTGCGTCTTTCGTTCTGCATCATTGACGTCTATAGTGGTTAATATGCCACGTACAGTTGTTAAAACACCCTCCTTCACTTTTTCCTCCAATATCGAAAAGTTGCATTTAAGTGATGTTGTTATACAGGACGAGGGGTTTTTCGAGTGGATTTCCTATTCCTGCAAATCCTTGAAGGATGTAACCCTTTCAGCAGTTCGTGAGATACATAGTATCACCATTGAAAGCTCGTCTTTGGAAAAATTTTATTTCATTAATTATGAGGTTGATGAAACCTGCCATATTAACATCTCTGGTGAGAAACTTGAAGAAATAAATGTCAGGTGCAATCATTCACCTAGCAGCACCATATTAAAAATTGTTGCTCCAAATGTTAAACGTTTGCTTTTGGAGGGGAATGTGAAAAATCACCTAAATCTGGGAGAATTGAAATGTTTGGAACAAGCTGCTATTCTTATGGAGCCTATAGTAGATGAGTTTAACAAAGTATTTGAGGTTCTTTCCAGTTTGTGCAGTGTTGAAGTTCTTGTTCTAAATGAAGCTACCATCCAGGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

351

Amino Acids

39.93

Weight (kDa)

5.08

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 66 1.6e-10 F-box domain
F-box-like PF12937 28 - 64 1.7e-08 F-box-like
LRR_At5g56370 PF24758 135 - 259 2.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 456, 527
Acc36I ACCTGC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 94
AclI AACGTT 1 cut(s) 874
AclWI GGATC 2 cut(s) 403, 416
AcsI RAATTY 4 cut(s) 125, 206, 388, 737
AcyI GRCGYC 2 cut(s) 453, 524
AfaI GTAC 2 cut(s) 61, 550
AfiI CCNNNNNNNGG 2 cut(s) 171, 913
AgsI TTSAA 8 cut(s) 123, 262, 437, 670, 719, 803, 925, 1016
AjnI CCWGG 2 cut(s) 404, 1044
AluBI AGCT 6 cut(s) 253, 321, 358, 723, 941, 1037
AluI AGCT 6 cut(s) 253, 321, 358, 723, 941, 1037
Alw26I GTCTC 2 cut(s) 166, 198
AlwI GGATC 2 cut(s) 403, 416
Aor13HI TCCGGA 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 837, 941
ApoI RAATTY 4 cut(s) 125, 206, 388, 737
AseI ATTAAT 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 7 cut(s) 59, 394, 448, 703, 803, 822, 896
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 849, 928
BccI CCATC 6 cut(s) 165, 205, 221, 332, 502, 1049
BciT130I CCWGG 2 cut(s) 406, 1046
BcoDI GTCTC 2 cut(s) 166, 198
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 2 cut(s) 528, 960
BfuAI ACCTGC 1 cut(s) 779
BisI GCNGC 2 cut(s) 838, 942
BlsI GCNGC 2 cut(s) 839, 943
Bme1390I CCNGG 2 cut(s) 406, 1046
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 4 cut(s) 55, 410, 480, 957
BmrFI CCNGG 2 cut(s) 406, 1046
BmsI GCATC 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 2 cut(s) 453, 524
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 913
Bse1I ACTGG 2 cut(s) 37, 999
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 2 cut(s) 406, 1046
BseGI GGATG 3 cut(s) 343, 679, 1041
BseLI CCNNNNNNNGG 2 cut(s) 171, 913
BseNI ACTGG 2 cut(s) 37, 999
BseXI GCAGC 2 cut(s) 849, 928
BsgI GTGCAG 1 cut(s) 1027
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 171, 913
BsmAI GTCTC 2 cut(s) 166, 198
BsmBI CGTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 408
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 55, 410, 480, 957
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 2 cut(s) 403, 416
BspQI GCTCTTC 2 cut(s) 311, 348
BsrI ACTGG 2 cut(s) 37, 999
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 2 cut(s) 453, 524
Bst2UI CCWGG 2 cut(s) 406, 1046
Bst4CI ACNGT 3 cut(s) 64, 347, 553
Bst6I CTCTTC 2 cut(s) 311, 348
BstACI GRCGYC 2 cut(s) 453, 524
BstBAI YACGTR 1 cut(s) 548
BstDEI CTNAG 2 cut(s) 254, 293
BstF5I GGATG 3 cut(s) 343, 679, 1041
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 166, 198
BstMBI GATC 1 cut(s) 408
BstNI CCWGG 2 cut(s) 406, 1046
BstNSI RCATGY 2 cut(s) 249, 372
BstSCI CCNGG 2 cut(s) 404, 1044
BstSFI CTRYAG 2 cut(s) 528, 960
BstV1I GCAGC 2 cut(s) 849, 928
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BtsCI GGATG 3 cut(s) 343, 679, 1041
BtsI GCAGTG 1 cut(s) 1015
BtsIMutI CAGTG 2 cut(s) 352, 1015
BveI ACCTGC 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 60, 549
CviAII CATG 2 cut(s) 246, 369
CviJI RGCY 9 cut(s) 29, 253, 321, 358, 481, 723, 941, 958, 1037
CviKI_1 RGCY 9 cut(s) 29, 253, 321, 358, 481, 723, 941, 958, 1037
CviQI GTAC 2 cut(s) 60, 549
DdeI CTNAG 2 cut(s) 254, 293
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 311, 348
EarI CTCTTC 2 cut(s) 311, 348
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 404, 1044
EcoT22I ATGCAT 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 2 cut(s) 249, 372
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FatI CATG 2 cut(s) 245, 368
Fnu4HI GCNGC 2 cut(s) 838, 942
FokI GGATG 3 cut(s) 350, 686, 1028
Fsp4HI GCNGC 2 cut(s) 838, 942
FspBI CTAG 1 cut(s) 834
GluI GCNGC 2 cut(s) 838, 942
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 490
Hin1I GRCGYC 2 cut(s) 453, 524
Hin1II CATG 2 cut(s) 249, 372
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 95
HphI GGTGA 7 cut(s) 59, 394, 448, 703, 803, 822, 896
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 4 cut(s) 95, 412, 449, 695
HpyAV CCTTC 3 cut(s) 44, 580, 664
HpyCH4III ACNGT 3 cut(s) 64, 347, 553
HpyCH4IV ACGT 4 cut(s) 453, 524, 547, 874
HpyCH4V TGCA 6 cut(s) 275, 515, 601, 660, 822, 1008
HpyF3I CTNAG 2 cut(s) 254, 293
HpySE526I ACGT 4 cut(s) 453, 524, 547, 874
Hsp92I GRCGYC 2 cut(s) 453, 524
Hsp92II CATG 2 cut(s) 249, 372
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 408
LguI GCTCTTC 2 cut(s) 311, 348
LmnI GCTCC 4 cut(s) 7, 478, 865, 955
Lsp1109I GCAGC 2 cut(s) 849, 928
LweI GCATC 1 cut(s) 524
MaeI CTAG 1 cut(s) 834
MaeII ACGT 4 cut(s) 453, 524, 547, 874
MaeIII GTNAC 3 cut(s) 341, 454, 676
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 5 cut(s) 83, 236, 328, 365, 815
MflI RGATCY 1 cut(s) 408
MluCI AATT 9 cut(s) 125, 179, 206, 231, 388, 737, 751, 852, 920
MnlI CCTC 9 cut(s) 91, 417, 466, 577, 592, 622, 751, 880, 982
Mph1103I ATGCAT 1 cut(s) 277
MroI TCCGGA 1 cut(s) 94
MslI CAYNNNNRTG 2 cut(s) 348, 606
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 406, 1046
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 2 cut(s) 406, 1046
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 249, 372
NlaIV GGNNCC 4 cut(s) 55, 410, 480, 957
NmuCI GTSAC 2 cut(s) 341, 454
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 2 cut(s) 249, 372
PciSI GCTCTTC 2 cut(s) 311, 348
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 2 cut(s) 839, 943
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 750
Psp1406I AACGTT 1 cut(s) 874
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 404, 1044
PspGI CCWGG 2 cut(s) 404, 1044
PspN4I GGNNCC 4 cut(s) 55, 410, 480, 957
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 975, 1007
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 2 cut(s) 61, 550
RsaNI GTAC 2 cut(s) 60, 549
RseI CAYNNNNRTG 2 cut(s) 348, 606
SapI GCTCTTC 2 cut(s) 311, 348
SatI GCNGC 2 cut(s) 838, 942
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 406, 1046
SfaNI GCATC 1 cut(s) 524
SfcI CTRYAG 2 cut(s) 528, 960
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 348, 606
Sse9I AATT 9 cut(s) 125, 179, 206, 231, 388, 737, 751, 852, 920
SspMI CTAG 1 cut(s) 834
StyD4I CCNGG 2 cut(s) 404, 1044
TaaI ACNGT 3 cut(s) 64, 347, 553
TaiI ACGT 4 cut(s) 456, 527, 550, 877
TaqI TCGA 2 cut(s) 591, 639
TasI AATT 9 cut(s) 125, 179, 206, 231, 388, 737, 751, 852, 920
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 2 cut(s) 352, 1015
TseFI GTSAC 2 cut(s) 341, 454
TseI GCWGC 2 cut(s) 837, 941
Tsp45I GTSAC 2 cut(s) 341, 454
TspDTI ATGAA 6 cut(s) 98, 329, 366, 736, 780, 1047
TspRI CASTG 2 cut(s) 352, 1015
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 4 cut(s) 125, 206, 388, 737
XceI RCATGY 2 cut(s) 249, 372
XspI CTAG 1 cut(s) 834
ZraI GACGTC 2 cut(s) 454, 525
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.