RchiOBHm_Chr3g0474041

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000241
Physical Location & Seq
Forward (+)
19752728 .. 19755154
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43969

Sequence Viewer

Length: 1524 bp
ATGGAAATGATGAAACAAAGGCGTAAGTTAGCAAGTTGTGAAGGTGTAGGAGGTAGTGGTGGGAATGAGAGCGGGATAGACAGATTTAGCGATCTTCCGGATCAAGTTGCACACCACATTCTTTCCTTCCTGGCTTTGCCGGACCTTAGTCGTGTGTGTTGTGTGTCCAAAAGGTGTGGACAACTTTGTATATCTGCTCCCTCACTGAATTTTGATGAATTTTCCTCGGATTCTATGTCCACCTGTTCCGAGCAGCTAAAGTTGTTGACTTATTTGGTAAGGTTCTTGTTTCGTCGTGGGGATAATAAGATACAGTCCTTTCGTGTCCGTTGGGAAATTCACTCTATGCATGTAGATGCAACATCATGCATCTGTGATACATTGAGCATTTGGATCCAGAATGCAGTAGGGTGTAATGTTGAAGTGCTTGATCTTAAGATTACTTCATGTAACACCAAATTGGTGTTTTTTCCATCTTGTGTGTTTCTCTGTGCACCTTTGAAGTCTCTGGTGGTGGACATGAATTATACGGTCCTCAGAACTCCCTCTTCTGCCTTTTCCTCTAATCTCAAGTACTTGCAGTTGACAAATGTTTATATAGAAGATGAGGAGTTTTTCAAATGGATCTCATGTTCCTGCAAGTGCATTGGGGATTTGTCTCTTAGTCATGTTCATGGGATAGAGAACGTCACCATTTTCCGGTCATCTTTGGAAAGGTTTAGTTTGATTTGTGGTCCTCTGGATCATATGTGCCATTTAAATATCTCAAGTGAGAAACTTGTGGACATAAATCTTTACTGGACATTTGATTCACCTAGCAACAAATCCTTAACTATTGATGCCCCAAATCTTAAATGTTTCAATTGGATTGGGAATTTAATGAAATACCCAAATCTAGGAAAACTAGAATGCTTAGAAACAGCTGCACTTTATTTGAAGCCTGAAGTAGAGGACTTAAACAAGGTACATGAGGTTCTTTGGAGTTTACGCAGGGCTCCAGGTCTTTTGCTAAATGACGTGGTGATTAAGGCTTCATTTATGGATGGATCTGTGCCAGCTTCATTGTATGATACTTCCAGTTTGTGTTTGGTTATCGAAAGCTTTGTTGATGAGCTGGTCCCAGCATTGGTCTGTGTCTTCAGAAGAACACCTAATTTGAGTTTGTTATGCATAAAGTCTAAGCCACCACATAACCCTCAATCTAATACATACGGGTTTAATATGGAATACTGGAAGCTGCAAGACCTTGCTTTTACTAATCAGCTTAACCATGTGACTATAGAGCTTTGCAGTGGGTCTAATGGAATTGAGCTGGCAAAGTATATGCTCAAGTATGCTCTCAATATGCAGAGAATGGTTGTGATTTGTTTGCCCATAGATTTGAAGAAGGTTACAAGGAAACTAAAGAAAATCAAGATGATTTCCAATGCTGTACTTGTTATTCAGAAAAAGTTAAAAGGAAAACGATTAGAGCTTTCTTTATGTATTGTTTTATTTTATGTATTGCAGAGTTTATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

507

Amino Acids

57.34

Weight (kDa)

8.3

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 65 7.7e-06 F-box domain
LRR_At5g56370 PF24758 130 - 288 8.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 1 cut(s) 72
AclWI GGATC 6 cut(s) 108, 388, 401, 632, 750, 1054
AcsI RAATTY 4 cut(s) 208, 218, 336, 874
AcuI CTGAAG 2 cut(s) 963, 1123
AfaI GTAC 3 cut(s) 575, 966, 1434
AfiI CCNNNNNNNGG 3 cut(s) 699, 896, 1126
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 6 cut(s) 422, 502, 619, 862, 937, 1384
AjiI CACGTC 1 cut(s) 1018
AjnI CCWGG 2 cut(s) 129, 997
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 2 cut(s) 510, 663
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 6 cut(s) 108, 388, 401, 632, 750, 1054
Aor13HI TCCGGA 1 cut(s) 97
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 3 cut(s) 253, 923, 1237
ApoI RAATTY 4 cut(s) 208, 218, 336, 874
AspS9I GGNCC 4 cut(s) 142, 532, 734, 1117
AsuHPI GGTGA 3 cut(s) 682, 804, 1033
AvaII GGWCC 4 cut(s) 142, 532, 734, 1117
BaeGI GKGCMC 1 cut(s) 496
BamHI GGATCC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 997
BbsI GAAGAC 1 cut(s) 1129
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 3 cut(s) 265, 910, 1224
BccI CCATC 2 cut(s) 481, 1037
BciT130I CCWGG 2 cut(s) 131, 999
BcoDI GTCTC 2 cut(s) 510, 663
BfaI CTAG 3 cut(s) 816, 896, 905
BfmI CTRYAG 1 cut(s) 1278
BfrI CTTAAG 1 cut(s) 434
BisI GCNGC 3 cut(s) 254, 924, 1238
BlsI GCNGC 3 cut(s) 255, 925, 1239
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 2 cut(s) 131, 999
Bme18I GGWCC 4 cut(s) 142, 532, 734, 1117
BmgBI CACGTC 1 cut(s) 1018
BmgT120I GGNCC 4 cut(s) 142, 532, 734, 1117
BmiI GGNNCC 3 cut(s) 395, 996, 1119
BmrFI CCNGG 2 cut(s) 131, 999
BmsI GCATC 3 cut(s) 346, 378, 829
BoxI GACNNNNGTC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 1129
BpmI CTGGAG 1 cut(s) 981
BpuEI CTTGAG 3 cut(s) 554, 751, 1313
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 2 cut(s) 97, 699
Bsc4I CCNNNNNNNGG 3 cut(s) 699, 896, 1126
Bse1I ACTGG 3 cut(s) 803, 1077, 1235
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 2 cut(s) 131, 999
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 1048
BseLI CCNNNNNNNGG 3 cut(s) 699, 896, 1126
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 3 cut(s) 803, 1077, 1235
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 3 cut(s) 265, 910, 1224
BseYI CCCAGC 1 cut(s) 1120
BsgI GTGCAG 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 3 cut(s) 98, 140, 700
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 3 cut(s) 699, 896, 1126
BsmAI GTCTC 2 cut(s) 510, 663
BsmFI GGGAC 1 cut(s) 1103
BsmI GAATGC 2 cut(s) 406, 914
Bsp1286I GDGCHC 2 cut(s) 496, 997
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 549
BspEI TCCGGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 395, 996, 1119
BspPI GGATC 6 cut(s) 108, 388, 401, 632, 750, 1054
BspTI CTTAAG 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 72
BsrI ACTGG 3 cut(s) 803, 1077, 1235
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
Bst2UI CCWGG 2 cut(s) 131, 999
Bst4CI ACNGT 2 cut(s) 315, 532
Bst6I CTCTTC 1 cut(s) 553
BstAFI CTTAAG 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 1056, 1314
BstDEI CTNAG 5 cut(s) 146, 536, 662, 913, 1179
BstF5I GGATG 1 cut(s) 1048
BstKTI GATC 7 cut(s) 94, 103, 396, 433, 627, 745, 1049
BstMAI GTCTC 2 cut(s) 510, 663
BstMBI GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
BstNI CCWGG 2 cut(s) 131, 999
BstNSI RCATGY 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 129, 997
BstSFI CTRYAG 1 cut(s) 1278
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 3 cut(s) 265, 910, 1224
BstV2I GAAGAC 1 cut(s) 1129
BstX2I RGATCY 3 cut(s) 393, 624, 1046
BstYI RGATCY 3 cut(s) 393, 624, 1046
BtrI CACGTC 1 cut(s) 1018
BtsCI GGATG 1 cut(s) 1048
BtsI GCAGTG 1 cut(s) 1297
BtsIMutI CAGTG 2 cut(s) 203, 1297
Cac8I GCNNGC 2 cut(s) 1056, 1314
Cfr13I GGNCC 4 cut(s) 142, 532, 734, 1117
Csp6I GTAC 3 cut(s) 574, 965, 1433
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 9 cut(s) 350, 366, 447, 520, 630, 668, 674, 968, 1271
CviQI GTAC 3 cut(s) 574, 965, 1433
DdeI CTNAG 5 cut(s) 146, 536, 662, 913, 1179
DpnI GATC 7 cut(s) 93, 102, 395, 432, 626, 744, 1048
DpnII GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
DraI TTTAAA 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 997
Eco47I GGWCC 4 cut(s) 142, 532, 734, 1117
Eco57I CTGAAG 2 cut(s) 963, 1123
EcoRII CCWGG 2 cut(s) 129, 997
EcoT22I ATGCAT 3 cut(s) 351, 371, 1172
EcoT38I GRGCYC 1 cut(s) 997
FaeI CATG 9 cut(s) 353, 369, 450, 523, 633, 671, 677, 971, 1274
FaqI GGGAC 1 cut(s) 1103
FatI CATG 9 cut(s) 349, 365, 446, 519, 629, 667, 673, 967, 1270
FauI CCCGC 1 cut(s) 65
FauNDI CATATG 1 cut(s) 747
Fnu4HI GCNGC 3 cut(s) 254, 924, 1238
FokI GGATG 1 cut(s) 1055
FriOI GRGCYC 1 cut(s) 997
Fsp4HI GCNGC 3 cut(s) 254, 924, 1238
FspBI CTAG 3 cut(s) 816, 896, 905
GluI GCNGC 3 cut(s) 254, 924, 1238
GsaI CCCAGC 1 cut(s) 1124
GsuI CTGGAG 1 cut(s) 981
HapII CCGG 3 cut(s) 98, 140, 700
Hin1II CATG 9 cut(s) 353, 369, 450, 523, 633, 671, 677, 971, 1274
HincII GTYRAC 2 cut(s) 267, 585
HindII GTYRAC 2 cut(s) 267, 585
HindIII AAGCTT 1 cut(s) 1099
HinfI GANTC 2 cut(s) 230, 809
HpaII CCGG 3 cut(s) 98, 140, 700
HphI GGTGA 3 cut(s) 682, 804, 1033
Hpy166II GTNNAC 8 cut(s) 179, 240, 267, 494, 517, 585, 784, 986
Hpy188I TCNGA 6 cut(s) 229, 250, 539, 1142, 1446, 1523
Hpy188III TCNNGA 4 cut(s) 98, 397, 740, 1414
Hpy8I GTNNAC 8 cut(s) 179, 240, 267, 494, 517, 585, 784, 986
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 3 cut(s) 35, 136, 1381
HpyCH4III ACNGT 2 cut(s) 315, 532
HpyCH4IV ACGT 2 cut(s) 687, 1017
HpyF3I CTNAG 5 cut(s) 146, 536, 662, 913, 1179
HpySE526I ACGT 2 cut(s) 687, 1017
Hsp92II CATG 9 cut(s) 353, 369, 450, 523, 633, 671, 677, 971, 1274
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
LmnI GCTCC 2 cut(s) 202, 1000
Lsp1109I GCAGC 3 cut(s) 265, 910, 1224
LweI GCATC 3 cut(s) 346, 378, 829
MaeI CTAG 3 cut(s) 816, 896, 905
MaeII ACGT 2 cut(s) 687, 1017
MaeIII GTNAC 4 cut(s) 449, 688, 1273, 1390
MalI GATC 7 cut(s) 93, 102, 395, 432, 626, 744, 1048
MbiI CCGCTC 1 cut(s) 72
MboI GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
MboII GAAGA 6 cut(s) 86, 540, 614, 1129, 1155, 1396
MfeI CAATTG 1 cut(s) 862
MflI RGATCY 3 cut(s) 393, 624, 1046
MhlI GDGCHC 2 cut(s) 496, 997
MluCI AATT 9 cut(s) 208, 218, 336, 458, 523, 862, 874, 1153, 1305
Mph1103I ATGCAT 3 cut(s) 351, 371, 1172
MroI TCCGGA 1 cut(s) 97
MslI CAYNNNNRTG 2 cut(s) 354, 672
MspA1I CMGCKG 1 cut(s) 923
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 3 cut(s) 98, 140, 700
MspR9I CCNGG 2 cut(s) 131, 999
MunI CAATTG 1 cut(s) 862
Mva1269I GAATGC 2 cut(s) 406, 914
MvaI CCWGG 2 cut(s) 131, 999
NdeI CATATG 1 cut(s) 747
NdeII GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
NlaIII CATG 9 cut(s) 353, 369, 450, 523, 633, 671, 677, 971, 1274
NlaIV GGNNCC 3 cut(s) 395, 996, 1119
NmuCI GTSAC 2 cut(s) 688, 1273
NsiI ATGCAT 3 cut(s) 351, 371, 1172
NspI RCATGY 1 cut(s) 353
PctI GAATGC 2 cut(s) 406, 914
PfeI GAWTC 2 cut(s) 230, 809
PkrI GCNGC 3 cut(s) 255, 925, 1239
PshAI GACNNNNGTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 129, 997
PspFI CCCAGC 1 cut(s) 1120
PspGI CCWGG 2 cut(s) 129, 997
PspN4I GGNNCC 3 cut(s) 395, 996, 1119
PspPI GGNCC 4 cut(s) 142, 532, 734, 1117
PsrI GAACNNNNNNTAC 2 cut(s) 957, 989
PsuI RGATCY 3 cut(s) 393, 624, 1046
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 3 cut(s) 575, 966, 1434
RsaNI GTAC 3 cut(s) 574, 965, 1433
RseI CAYNNNNRTG 2 cut(s) 354, 672
SatI GCNGC 3 cut(s) 254, 924, 1238
Sau3AI GATC 7 cut(s) 91, 100, 393, 430, 624, 742, 1046
Sau96I GGNCC 4 cut(s) 142, 532, 734, 1117
ScaI AGTACT 1 cut(s) 575
ScrFI CCNGG 2 cut(s) 131, 999
SduI GDGCHC 2 cut(s) 496, 997
SfaNI GCATC 3 cut(s) 346, 378, 829
SfcI CTRYAG 1 cut(s) 1278
SinI GGWCC 4 cut(s) 142, 532, 734, 1117
SmiI ATTTAAAT 1 cut(s) 759
SmiMI CAYNNNNRTG 2 cut(s) 354, 672
SmlI CTYRAG 4 cut(s) 434, 569, 766, 1328
SmoI CTYRAG 4 cut(s) 434, 569, 766, 1328
Sse9I AATT 9 cut(s) 208, 218, 336, 458, 523, 862, 874, 1153, 1305
SsiI CCGC 1 cut(s) 72
SspMI CTAG 3 cut(s) 816, 896, 905
StyD4I CCNGG 2 cut(s) 129, 997
SwaI ATTTAAAT 1 cut(s) 759
TaaI ACNGT 2 cut(s) 315, 532
TaiI ACGT 2 cut(s) 690, 1020
TaqI TCGA 1 cut(s) 1095
TasI AATT 9 cut(s) 208, 218, 336, 458, 523, 862, 874, 1153, 1305
TatI WGTACW 2 cut(s) 573, 1432
TfiI GAWTC 2 cut(s) 230, 809
TscAI CASTG 2 cut(s) 210, 1297
TseFI GTSAC 2 cut(s) 688, 1273
TseI GCWGC 3 cut(s) 253, 923, 1237
Tsp45I GTSAC 2 cut(s) 688, 1273
TspDTI ATGAA 8 cut(s) 26, 231, 435, 536, 662, 896, 1023, 1050
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 210, 1297
Vha464I CTTAAG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 492
VpaK11BI GGWCC 4 cut(s) 142, 532, 734, 1117
XapI RAATTY 4 cut(s) 208, 218, 336, 874
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 1084
XspI CTAG 3 cut(s) 816, 896, 905
ZrmI AGTACT 1 cut(s) 575
Zsp2I ATGCAT 3 cut(s) 351, 371, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.