MD14G1025100.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000241
Physical Location & Seq
Forward (+)
2324248 .. 2326399
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1025100.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGATTTTACAATGGTTAAAACACCTTCCGTTGCCTTTTCCTCGAATCTTGTATACCTGAAGTTATTAAATGTTAAAATAGAAGATGAGGGGTTTTTCAAATGGATCTCATGTTCCTGCAAATTCATCAAGGAAATATTTCTTTTTGGTATTAGCGTAAGAGGTAATATCATCATCAAGAGCTCTTCTCTGGAAAAATTTGGATATGTGGACGGTGGCAGCTTTACACTGAGCCATCTTAACATCTCAGGTGAGAAACTTGAAGTCATAAATATTACCTGGAGGTTTAATTCACCTGATGACAAGTCGTTAAATATTTTTGCTCCAAGACTCAAAGATTTATGTTGGAGGGGGAGCCTGGTGAATCAGGCAAACCTGGGAGAGCTAGAATGTTTAGAAAAAGCTGATATTTGCCTGGAGCCTAAAGCAGACGACTCTGACAAACTGATTAAGCATTTTTACAGTTTACACAGGGTTGAACATCTTGTTTTAAATGCAGCGACCTTTAAGGCTTTGTTCAGGGAACGATCCACGCATGCTCAGTTTGATCGTCTTTTTTATTTGCAATTGAATCTACGGAGCTTTTCTGATGATATCTTTCCTGCAGTGGTCTCTCTATTAAGAGGATTGCATAAATTGTGTACTTTATACATAACTTATTTTGCTGTCCCAAGTTCTATGGACCCTCAACCCAATGTATCTGGGTTTGATAAGGAATACTGGAAGCTACAGAATCTGGATTTTATTGATCAGATTAAGGAGGTTACCGTAGAGCTGGATGGGTCTAATAACGGGATTGAGTTTGCACGGTATATACTCGAGCATGCCAAGAACCTGGAGCAAATGTGCATACAAAATTTTTTGGATCTGTCTGATGATGCTATACTGAAGCTAAATGATAGCAAGAAGATGTCCAAGGCCACAGTTATCTTTGAGGCAGGCTACCGCAGTAGGCCACGGTTTGATTTCGACTGGGAGGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

329

Amino Acids

37.8

Weight (kDa)

5.61

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 946
AclWI GGATC 3 cut(s) 113, 522, 873
AcsI RAATTY 3 cut(s) 122, 197, 856
AcuI CTGAAG 2 cut(s) 80, 908
AfaI GTAC 1 cut(s) 643
AgsI TTSAA 4 cut(s) 100, 263, 479, 571
AjnI CCWGG 5 cut(s) 278, 357, 375, 414, 834
AloI GAACNNNNNNTCC 2 cut(s) 97, 129
AluBI AGCT 8 cut(s) 183, 222, 385, 404, 582, 727, 775, 892
AluI AGCT 8 cut(s) 183, 222, 385, 404, 582, 727, 775, 892
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 3 cut(s) 113, 522, 873
AlwNI CAGNNNCTG 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 2 cut(s) 918, 953
ApeKI GCWGC 2 cut(s) 219, 497
ApoI RAATTY 3 cut(s) 122, 197, 856
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 682
AsuHPI GGTGA 3 cut(s) 263, 285, 373
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 231, 509
BccI CCATC 2 cut(s) 243, 773
BciT130I CCWGG 5 cut(s) 280, 359, 377, 416, 836
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 603, 728
BisI GCNGC 2 cut(s) 220, 498
BlsI GCNGC 2 cut(s) 221, 499
Bme1390I CCNGG 5 cut(s) 280, 359, 377, 416, 836
Bme18I GGWCC 1 cut(s) 682
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 682
BmiI GGNNCC 3 cut(s) 356, 420, 684
BmrFI CCNGG 5 cut(s) 280, 359, 377, 416, 836
BmrI ACTGGG 1 cut(s) 982
BmsI GCATC 1 cut(s) 868
BmuI ACTGGG 1 cut(s) 982
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 3 cut(s) 301, 437, 857
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 376, 915, 956
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bse1I ACTGG 2 cut(s) 725, 977
BseBI CCWGG 5 cut(s) 280, 359, 377, 416, 836
BseDI CCNNGG 3 cut(s) 376, 915, 956
BseGI GGATG 1 cut(s) 784
BseMII CTCAG 3 cut(s) 221, 261, 554
BseNI ACTGG 2 cut(s) 725, 977
BseXI GCAGC 2 cut(s) 231, 509
BshFI GGCC 2 cut(s) 920, 955
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 818
BslFI GGGAC 1 cut(s) 653
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 2 cut(s) 920, 955
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 5 cut(s) 105, 527, 547, 748, 865
BspACI CCGC 1 cut(s) 946
BspANI GGCC 2 cut(s) 920, 955
BspCNI CTCAG 3 cut(s) 222, 260, 553
BspLI GGNNCC 3 cut(s) 356, 420, 684
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 3 cut(s) 113, 522, 873
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 616
BsrI ACTGG 2 cut(s) 725, 977
BssECI CCNNGG 3 cut(s) 376, 915, 956
BssMI GATC 5 cut(s) 105, 527, 547, 748, 865
BssNAI GTATAC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 915
Bst1107I GTATAC 1 cut(s) 55
Bst2UI CCWGG 5 cut(s) 280, 359, 377, 416, 836
Bst4CI ACNGT 6 cut(s) 215, 464, 769, 810, 925, 960
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 537, 825, 940
BstDEI CTNAG 3 cut(s) 230, 247, 540
BstDSI CCRYGG 1 cut(s) 956
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 1 cut(s) 784
BstKTI GATC 5 cut(s) 108, 530, 550, 751, 868
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 5 cut(s) 105, 527, 547, 748, 865
BstNI CCWGG 5 cut(s) 280, 359, 377, 416, 836
BstNSI RCATGY 2 cut(s) 539, 827
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 5 cut(s) 278, 357, 375, 414, 834
BstSFI CTRYAG 2 cut(s) 603, 728
BstV1I GCAGC 2 cut(s) 231, 509
BstX2I RGATCY 2 cut(s) 105, 865
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 2 cut(s) 105, 865
BstZ17I GTATAC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 920, 955
BtgI CCRYGG 1 cut(s) 956
BtsCI GGATG 1 cut(s) 784
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 227, 612
Cac8I GCNNGC 3 cut(s) 537, 825, 940
CaiI CAGNNNCTG 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 642
CviAII CATG 3 cut(s) 111, 536, 824
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 230, 247, 540
DpnI GATC 5 cut(s) 107, 529, 549, 750, 867
DpnII GATC 5 cut(s) 105, 527, 547, 748, 865
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 616
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 682
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 80, 908
Eco88I CYCGRG 1 cut(s) 818
Eco91I GGTNACC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 183
EcoO65I GGTNACC 1 cut(s) 763
EcoRII CCWGG 5 cut(s) 278, 357, 375, 414, 834
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 3 cut(s) 114, 539, 827
FaqI GGGAC 1 cut(s) 653
FatI CATG 3 cut(s) 110, 535, 823
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 220, 498
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 220, 498
FspBI CTAG 1 cut(s) 386
GluI GCNGC 2 cut(s) 220, 498
GsuI CTGGAG 3 cut(s) 301, 437, 857
HaeIII GGCC 2 cut(s) 920, 955
Hin1II CATG 3 cut(s) 114, 539, 827
HinfI GANTC 6 cut(s) 46, 330, 364, 434, 571, 733
HphI GGTGA 3 cut(s) 263, 285, 373
Hpy166II GTNNAC 4 cut(s) 55, 211, 467, 642
Hpy188I TCNGA 4 cut(s) 439, 589, 753, 874
Hpy188III TCNNGA 3 cut(s) 178, 191, 737
Hpy8I GTNNAC 4 cut(s) 55, 211, 467, 642
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 6 cut(s) 215, 464, 769, 810, 925, 960
HpyCH4V TGCA 7 cut(s) 120, 497, 565, 605, 631, 806, 849
HpyF3I CTNAG 3 cut(s) 230, 247, 540
Hsp92II CATG 3 cut(s) 114, 539, 827
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 5 cut(s) 105, 527, 547, 748, 865
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 5 cut(s) 328, 354, 418, 579, 838
Lsp1109I GCAGC 2 cut(s) 231, 509
LweI GCATC 1 cut(s) 868
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 763
MalI GATC 5 cut(s) 107, 529, 549, 750, 867
MboI GATC 5 cut(s) 105, 527, 547, 748, 865
MboII GAAGA 3 cut(s) 95, 177, 919
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 2 cut(s) 105, 865
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 6 cut(s) 122, 197, 289, 566, 635, 856
MlyI GAGTC 2 cut(s) 324, 428
MmeI TCCRAC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 138
MspR9I CCNGG 5 cut(s) 280, 359, 377, 416, 836
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 5 cut(s) 280, 359, 377, 416, 836
NdeII GATC 5 cut(s) 105, 527, 547, 748, 865
NlaIII CATG 3 cut(s) 114, 539, 827
NlaIV GGNNCC 3 cut(s) 356, 420, 684
NspI RCATGY 2 cut(s) 539, 827
PaeI GCATGC 2 cut(s) 539, 827
PaeR7I CTCGAG 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 46, 364, 571, 733
PkrI GCNGC 2 cut(s) 221, 499
PleI GAGTC 2 cut(s) 324, 428
PpsI GAGTC 2 cut(s) 324, 428
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 5 cut(s) 278, 357, 375, 414, 834
PspEI GGTNACC 1 cut(s) 763
PspGI CCWGG 5 cut(s) 278, 357, 375, 414, 834
PspN4I GGNNCC 3 cut(s) 356, 420, 684
PspPI GGNCC 1 cut(s) 682
PspXI VCTCGAGB 1 cut(s) 818
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 2 cut(s) 105, 865
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 190
SatI GCNGC 2 cut(s) 220, 498
Sau3AI GATC 5 cut(s) 105, 527, 547, 748, 865
Sau96I GGNCC 1 cut(s) 682
SchI GAGTC 2 cut(s) 324, 428
ScrFI CCNGG 5 cut(s) 280, 359, 377, 416, 836
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 2 cut(s) 603, 728
Sfr274I CTCGAG 1 cut(s) 818
SinI GGWCC 1 cut(s) 682
SlaI CTCGAG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 2 cut(s) 539, 827
Sse9I AATT 6 cut(s) 122, 197, 289, 566, 635, 856
SsiI CCGC 1 cut(s) 946
SspI AATATT 3 cut(s) 138, 274, 316
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 5 cut(s) 278, 357, 375, 414, 834
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 6 cut(s) 215, 464, 769, 810, 925, 960
TaqI TCGA 3 cut(s) 44, 819, 969
TasI AATT 6 cut(s) 122, 197, 289, 566, 635, 856
TatI WGTACW 1 cut(s) 641
TfiI GAWTC 4 cut(s) 46, 364, 571, 733
TscAI CASTG 2 cut(s) 234, 612
TseI GCWGC 2 cut(s) 219, 497
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 2 cut(s) 19, 592
TspRI CASTG 2 cut(s) 234, 612
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 3 cut(s) 122, 197, 856
XceI RCATGY 2 cut(s) 539, 827
XhoI CTCGAG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.