Rmu_sc0004507.1_g000032

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000241
Physical Location & Seq
Reverse (-)
142640 .. 144163
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000032.1.cds

Sequence Viewer

Length: 981 bp
atggctactgcaagttgtgatggtggaggaggttgtacggatagtgagaatatgataggaacgttgggtaatcttccagacccagttgtgcatcacattgttccttttcttgctatcactgacctcactcgttttggctgtgtgtccaaaaagtgtagagaactttatctatcattcttgattcatcgtggggagaataagatgcacaaatttcgtattcggtgggttccccttgagtactttgaccatgaaacaccatgcttttgtggttgtaatgagaattctcgaacgatggcgtggttacactatgcagtaaggtgtaatgcggaagtgcttgatcttgagatctctatatttaaggatgaaacaccattagcatttccatgttgcatgtttctgtgtgaatctttgaggtctctatcggtggatatgaattgtgagaaacttgacagcataactattgtctggggatttgattcacctagcaacaaatcgtttaatgtttctgctccaaaccttaaaagcttctattgggtggggaatttgatgattcactcatatatgagagagctggtaggcttagaagaagttgggttttatctagagcctgaagaagatgagattgaccatgtcctagatgatatcggcacttcacacaagcgtagctttcttgttataaaggaagatgccatgaaggaactatacaagagaggaatttcgccaacttcgtttggtaatatttgttatttgcgtgtgcatattgggagcttcgtcagtgacttagtcccatcaatggtgtttcttttcggagcaaggacaaatctgagtactttatacatcaagtctactccacctttatacgacttcggatctaatacatctggtttcgacatgggatactgggagcagcaaaaccttggtttcatttataagaagaggttacgattgagctttccaacggatctaatggaatggagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

326

Amino Acids

37.21

Weight (kDa)

5.39

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 677, 930
AccI GTMKAC 1 cut(s) 845
AciI CCGC 1 cut(s) 326
AclI AACGTT 1 cut(s) 62
AclWI GGATC 2 cut(s) 877, 969
AcsI RAATTY 4 cut(s) 209, 280, 541, 714
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 3 cut(s) 37, 239, 829
AfiI CCNNNNNNNGG 1 cut(s) 793
AluBI AGCT 5 cut(s) 525, 571, 666, 768, 951
AluI AGCT 5 cut(s) 525, 571, 666, 768, 951
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 2 cut(s) 877, 969
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 4 cut(s) 209, 280, 541, 714
AsuHPI GGTGA 1 cut(s) 471
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BbvI GCAGC 1 cut(s) 919
BccI CCATC 3 cut(s) 14, 286, 796
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciVI GTATCC 1 cut(s) 890
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 483, 602, 635
BfuI GTATCC 1 cut(s) 890
BglII AGATCT 1 cut(s) 345
BisI GCNGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 909
BmcAI AGTACT 2 cut(s) 239, 829
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 2 cut(s) 77, 910
BmsI GCATC 3 cut(s) 100, 192, 676
BmuI ACTGGG 2 cut(s) 77, 910
BpuEI CTTGAG 2 cut(s) 254, 362
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 916
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 83, 905
BseDI CCNNGG 1 cut(s) 916
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMII CTCAG 1 cut(s) 815
BseNI ACTGG 2 cut(s) 83, 905
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 919
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 770
Bso31I GGTCTC 1 cut(s) 420
Bsp143I GATC 4 cut(s) 337, 345, 869, 961
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 877, 969
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 2 cut(s) 83, 905
BssECI CCNNGG 1 cut(s) 916
BssMI GATC 4 cut(s) 337, 345, 869, 961
BssT1I CCWWGG 1 cut(s) 916
Bst6I CTCTTC 1 cut(s) 929
BstDEI CTNAG 3 cut(s) 580, 781, 824
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 4 cut(s) 340, 348, 872, 964
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 4 cut(s) 337, 345, 869, 961
BstNSI RCATGY 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 919
BstX2I RGATCY 3 cut(s) 345, 869, 961
BstYI RGATCY 3 cut(s) 345, 869, 961
BsuI GTATCC 1 cut(s) 890
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 117, 781
Csp6I GTAC 3 cut(s) 36, 238, 828
CviAII CATG 7 cut(s) 248, 258, 384, 391, 629, 691, 892
CviJI RGCY 9 cut(s) 5, 138, 525, 571, 579, 607, 666, 768, 951
CviKI_1 RGCY 9 cut(s) 5, 138, 525, 571, 579, 607, 666, 768, 951
CviQI GTAC 3 cut(s) 36, 238, 828
DdeI CTNAG 3 cut(s) 580, 781, 824
DpnI GATC 4 cut(s) 339, 347, 871, 963
DpnII GATC 4 cut(s) 337, 345, 869, 961
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
Eco130I CCWWGG 1 cut(s) 916
Eco31I GGTCTC 1 cut(s) 420
Eco32I GATATC 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 280
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 7 cut(s) 251, 261, 387, 394, 632, 694, 895
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 770
FatI CATG 7 cut(s) 247, 257, 383, 390, 628, 690, 891
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 1 cut(s) 908
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 908
FspBI CTAG 3 cut(s) 483, 602, 635
GluI GCNGC 1 cut(s) 908
Hin1II CATG 7 cut(s) 251, 261, 387, 394, 632, 694, 895
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 4 cut(s) 181, 404, 476, 550
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 1 cut(s) 846
Hpy188I TCNGA 3 cut(s) 809, 825, 869
Hpy188III TCNNGA 5 cut(s) 77, 178, 285, 341, 602
Hpy8I GTNNAC 1 cut(s) 846
HpyAV CCTTC 1 cut(s) 688
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 6 cut(s) 11, 91, 205, 311, 390, 757
HpyF3I CTNAG 3 cut(s) 580, 781, 824
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 7 cut(s) 251, 261, 387, 394, 632, 694, 895
Kzo9I GATC 4 cut(s) 337, 345, 869, 961
LmnI GCTCC 4 cut(s) 514, 765, 809, 904
LpnPI CCDG 7 cut(s) 90, 96, 451, 557, 621, 867, 886
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 3 cut(s) 100, 192, 676
MaeI CTAG 3 cut(s) 483, 602, 635
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 300, 776, 939
MalI GATC 4 cut(s) 339, 347, 871, 963
MboI GATC 4 cut(s) 337, 345, 869, 961
MboII GAAGA 6 cut(s) 65, 596, 623, 626, 695, 946
MflI RGATCY 3 cut(s) 345, 869, 961
MluCI AATT 5 cut(s) 209, 280, 433, 541, 714
MmeI TCCRAC 1 cut(s) 980
MnlI CCTC 6 cut(s) 20, 23, 134, 405, 704, 930
MseI TTAA 3 cut(s) 357, 498, 519
MslI CAYNNNNRTG 1 cut(s) 382
NdeII GATC 4 cut(s) 337, 345, 869, 961
NlaIII CATG 7 cut(s) 251, 261, 387, 394, 632, 694, 895
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 776
NspI RCATGY 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 725
PfeI GAWTC 4 cut(s) 181, 404, 476, 550
PflFI GACNNNGTC 2 cut(s) 629, 782
PkrI GCNGC 1 cut(s) 909
PsiI TTATAA 2 cut(s) 677, 930
Psp1406I AACGTT 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 3 cut(s) 345, 869, 961
PsyI GACNNNGTC 2 cut(s) 629, 782
RsaI GTAC 3 cut(s) 37, 239, 829
RsaNI GTAC 3 cut(s) 36, 238, 828
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 3 cut(s) 357, 498, 519
SatI GCNGC 1 cut(s) 908
Sau3AI GATC 4 cut(s) 337, 345, 869, 961
ScaI AGTACT 2 cut(s) 239, 829
SfaNI GCATC 3 cut(s) 100, 192, 676
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 233, 341
SmoI CTYRAG 2 cut(s) 233, 341
Sse9I AATT 5 cut(s) 209, 280, 433, 541, 714
SsiI CCGC 1 cut(s) 326
SspI AATATT 1 cut(s) 739
SspMI CTAG 3 cut(s) 483, 602, 635
StyI CCWWGG 1 cut(s) 916
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 286, 888
TasI AATT 5 cut(s) 209, 280, 433, 541, 714
TatI WGTACW 2 cut(s) 237, 827
TfiI GAWTC 4 cut(s) 181, 404, 476, 550
Tru1I TTAA 3 cut(s) 357, 498, 519
Tru9I TTAA 3 cut(s) 357, 498, 519
TscAI CASTG 2 cut(s) 124, 781
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 6 cut(s) 173, 264, 378, 446, 707, 913
TspGWI ACGGA 2 cut(s) 53, 974
TspRI CASTG 2 cut(s) 124, 781
Tth111I GACNNNGTC 2 cut(s) 629, 782
XapI RAATTY 4 cut(s) 209, 280, 541, 714
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 845
XspI CTAG 3 cut(s) 483, 602, 635
ZrmI AGTACT 2 cut(s) 239, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.