MD14G1026200.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000241
Physical Location & Seq
Forward (+)
2380012 .. 2380392
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1026200.v1.1.491

Sequence Viewer

Length: 312 bp
ATGGCCCTGAAACTGATGCAAGTAAAATGCTCTCAGGTTGACATTGGAGACTGGGGTTTGCAAAACCTTCCTTTTATCCATCAACTTAAGGAGGTGATGATAGGGCTATCCGATGGATCTAACGGGATTCAGTTTGCAAAATATATCCTCGAGCATGCTCAGAATTTGAAGAAGATGAACATCGTTCATTCACCTCGGCAGTCTATTGATGTAGCAGAGTTAAAGAAAAGCAAGAGGGCTTCCAATGTTGCACAGTTAGTCTTTCAGGAGGATCGACCTAGGAAAATAGTAGATCTAGATACAGTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

9.17

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 35 - 61 4.8e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 124, 279
AcsI RAATTY 1 cut(s) 163
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 124, 279
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 163
AspA2I CCTAGG 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 106, 183
AvaI CYCGRG 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 298
BccI CCATC 2 cut(s) 87, 107
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 279, 296, 310
BfrI CTTAAG 1 cut(s) 86
BglII AGATCT 1 cut(s) 292
BlnI CCTAGG 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 194, 278
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 194, 278
BseJI GATNNNNATC 1 cut(s) 179
BseMII CTCAG 2 cut(s) 47, 173
BseNI ACTGG 1 cut(s) 56
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 3 cut(s) 116, 271, 292
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 46, 172
BspPI GGATC 2 cut(s) 124, 279
BspTI CTTAAG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 194, 278
BssMI GATC 3 cut(s) 116, 271, 292
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 255, 304
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 33, 159
BstKTI GATC 3 cut(s) 119, 274, 295
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 116, 271, 292
BstNSI RCATGY 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 116, 292
BstYI RGATCY 2 cut(s) 116, 292
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 5, 106, 239
CviKI_1 RGCY 3 cut(s) 5, 106, 239
DdeI CTNAG 2 cut(s) 33, 159
DpnI GATC 3 cut(s) 118, 273, 294
DpnII GATC 3 cut(s) 116, 271, 292
Eco130I CCWWGG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 144, 156
FatI CATG 1 cut(s) 154
FspBI CTAG 3 cut(s) 279, 296, 310
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 127
HphI GGTGA 2 cut(s) 106, 183
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 112, 162
Hpy188III TCNNGA 2 cut(s) 266, 296
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 255, 304
HpyCH4V TGCA 4 cut(s) 19, 61, 137, 251
HpyF3I CTNAG 2 cut(s) 33, 159
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 116, 271, 292
LpnPI CCDG 4 cut(s) 20, 20, 37, 251
LweI GCATC 1 cut(s) 6
MaeI CTAG 3 cut(s) 279, 296, 310
MalI GATC 3 cut(s) 118, 273, 294
MboI GATC 3 cut(s) 116, 271, 292
MboII GAAGA 3 cut(s) 181, 184, 298
MflI RGATCY 2 cut(s) 116, 292
MluCI AATT 1 cut(s) 163
MnlI CCTC 5 cut(s) 85, 158, 204, 228, 262
MseI TTAA 2 cut(s) 87, 221
MspCI CTTAAG 1 cut(s) 86
NdeII GATC 3 cut(s) 116, 271, 292
NlaIII CATG 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 175
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 149
PfeI GAWTC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 149
PsuI RGATCY 2 cut(s) 116, 292
SaqAI TTAA 2 cut(s) 87, 221
Sau3AI GATC 3 cut(s) 116, 271, 292
Sau96I GGNCC 1 cut(s) 4
SetI ASST 5 cut(s) 39, 69, 96, 196, 280
SfaNI GCATC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 86, 149
SmoI CTYRAG 2 cut(s) 86, 149
SphI GCATGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 279, 296, 310
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 255, 304
TaqI TCGA 2 cut(s) 150, 274
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 87, 221
Tru9I TTAA 2 cut(s) 87, 221
TspDTI ATGAA 2 cut(s) 176, 191
Vha464I CTTAAG 1 cut(s) 86
XapI RAATTY 1 cut(s) 163
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 3 cut(s) 279, 296, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.