FvH4_6g18954

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
12556003 .. 12556738
736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18954.t1

Sequence Viewer

Length: 468 bp
ATGCAGGTTTTGTCGTCGAGGGAATATATATTTCCCACACCATTAGATGATCTTTGTTGCTTCAGTGTGGAACTTAAGAACTTGAGTGTTGACATTGTTCCTGCAATGGTCTCTCTTCTTAGAGAAATGCCTAATCTGAATACTTTGCAAATACGGTGTAGCCCTCGCTCAGGTGTTTCTAATGCTCGATGTTCTGGTATTGATATGGAATTCTGGAAATTGCAAAACCTTGCTTTCATTTACCGGCTCAAGGAGGCAACGTTATGGCTTTCTAATGGATCCAATGGAGTTGAACTGGCAAAGTATATCCTGGAGCATGCTCAGAACTTGGAGAAAATGGTCATATTTCATCCATTCAAAGACTCCGATGTCATGAGGGAGATAAAAAGCAGGATGATATCCAGCGCCACAGTTGTCTGTCATGTCAGAAAGGATGAAAGACCAACCTCATTTCGTTTTATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

156

Amino Acids

17.85

Weight (kDa)

8.31

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AclI AACGTT 1 cut(s) 260
AclWI GGATC 2 cut(s) 273, 286
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 46
AfiI CCNNNNNNNGG 2 cut(s) 170, 250
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 293, 358
AjnI CCWGG 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 2 cut(s) 273, 286
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 407
BamHI GGATCC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 115
BfoI RGCGCY 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 103, 233
BsaI GGTCTC 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 250
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 3 cut(s) 349, 399, 439
BseLI CCNNNNNNNGG 2 cut(s) 170, 250
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 183, 335
BseNI ACTGG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 170, 250
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 49, 278
BspCNI CTCAG 2 cut(s) 182, 334
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 2 cut(s) 273, 286
BspTI CTTAAG 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 243
BssMI GATC 2 cut(s) 49, 278
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 156, 412
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 119, 169, 321
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 349, 399, 439
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 2 cut(s) 52, 281
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 49, 278
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtsCI GGATG 3 cut(s) 349, 399, 439
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 243
CviAII CATG 3 cut(s) 317, 373, 422
CviJI RGCY 3 cut(s) 162, 247, 268
CviKI_1 RGCY 3 cut(s) 162, 247, 268
DdeI CTNAG 3 cut(s) 119, 169, 321
DpnI GATC 2 cut(s) 51, 280
DpnII GATC 2 cut(s) 49, 278
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 399
FaeI CATG 3 cut(s) 320, 376, 425
FaiI YATR 9 cut(s) 27, 29, 206, 265, 306, 318, 344, 374, 423
FatI CATG 3 cut(s) 316, 372, 421
FokI GGATG 3 cut(s) 336, 406, 446
GlaI GCGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 408
HapII CCGG 1 cut(s) 244
HhaI GCGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 320, 376, 425
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 138, 324, 367, 428
Hpy188III TCNNGA 2 cut(s) 214, 373
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 156, 412
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 4 cut(s) 4, 104, 148, 223
HpyF3I CTNAG 3 cut(s) 119, 169, 321
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 3 cut(s) 320, 376, 425
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 49, 278
LmnI GCTCC 1 cut(s) 313
MaeII ACGT 1 cut(s) 260
MalI GATC 2 cut(s) 51, 280
MboI GATC 2 cut(s) 49, 278
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 278
MluCI AATT 2 cut(s) 209, 218
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 5 cut(s) 12, 174, 247, 369, 457
MseI TTAA 2 cut(s) 75, 466
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
NdeII GATC 2 cut(s) 49, 278
NlaIII CATG 3 cut(s) 320, 376, 425
NlaIV GGNNCC 1 cut(s) 280
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PagI TCATGA 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 309
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Psp1406I AACGTT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 280
PsuI RGATCY 1 cut(s) 278
SaqAI TTAA 2 cut(s) 75, 466
Sau3AI GATC 2 cut(s) 49, 278
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 311
SetI ASST 5 cut(s) 9, 175, 231, 263, 449
SmlI CTYRAG 3 cut(s) 74, 82, 248
SmoI CTYRAG 3 cut(s) 74, 82, 248
SphI GCATGC 1 cut(s) 320
Sse9I AATT 2 cut(s) 209, 218
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 156, 412
TaiI ACGT 1 cut(s) 263
TaqI TCGA 2 cut(s) 17, 187
TasI AATT 2 cut(s) 209, 218
Tru1I TTAA 2 cut(s) 75, 466
Tru9I TTAA 2 cut(s) 75, 466
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 226, 338, 450, 452
TspRI CASTG 1 cut(s) 70
Vha464I CTTAAG 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.