FvH4_6g19010

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
12599491 .. 12601378
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19010.t1

Sequence Viewer

Length: 1482 bp
ATGATGGCACAGAAGCGTAAGTCATTGGCTACTGGAAGTTGTGAGGGTGAAGGGCTCTGTACTGTGAATATGATAGACAGATTTAGCAATCTTCCCGAGGGAGTTATTCATCACATTCTTTCTGATTTTGTGGTTAAAGACCTTGCTAGATTCTGCTGTGTCTCCAAACGATGGAGAGAGTTATGTCTGTCGTCTCCGTCGGTGAACTTCTGTGGATTTAATACAGATGAAATGGCGGATATGGCGTGTGAGCTTAGGTTGAAGTTGGTGAATACATTGGATAGGTTCTTGCTTAGTCGTGGGGATAATGAGATGAAGAGCTTTTGTCTGTTTTGGGATGGTCACAGTGATGAAGAGCTTGACGAACCTTGCTTCTGTGTTAATGAGAATTTCCGAATAAACACCTGGATCCAGAATGCTGTGAGGTGTAAAGTTGAAAAGGTTCATCTTGCAGTCGCTTATTTTGATTTTGAGGGAGAACCAATAGCATTTCCATCTTGCATCTTTCGTTCATCATCATTGAGGTCTTTAGTGGTTGAGATGCCACATACAGTTTTTAAAACACCCTCATTCACTTTTTCCTCCAATCTCAAAAGGTTGGATTTGAGAGACATTATTATACAGGACGAGGGGTTTTTCAAGTGGATTTCCTGTTCCTGCAAATCCTTGAAGGATATCTCTCTTACAGATTGTGAGATATATAATGTCACTATTGAAAGCTCATCTTTGGAAAAATTTGATTTCTTTAATTACATGATTTTTGAAACCTGCCATATTAACATCTCTGGTGGGAAACTTGAAGAAATAAATGTCAACTGCTATCATTCACCTAGCAGCGCCGTATTAAAAATTGTTGCTCCAAATGTTAAACGTTTGCTTTTGGAGGGGAATGTGAAAAATGACCTAAATCTGGGAGAATTGAATTGTTTGGAAGAAGCTGCTATTCTTATGGAGCCTATAGTAGATGAGTTTGACAAAGTATATGAGGTTCTCTCCAGTTTGTGCAGTGTTAAAGTTCTTGTTCTGAATGAAGCTACCATCAAGGCTGCATGCAAGGAGGAACGCGTGCAAGTTCAGTTAGATGAGGTTTGGTACTTGCAAATGAAGATTGGTAGCTTTACTGATGATCTAGTCCCAGCAGTCGTCTGTCTTTTAAGAGGAACACCAGAGTTGTGTACTTTATACATTCGGTATAAGCCAACCTCACTCGTCCCTAAATATAATACATCCAGGTTTGATATTGAGTATTGGAAGATGCAAAACCTGGGATTTATTTCTCAGGTTGAGGATGTTACCATAGAGCTTAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATATTCTTGAGCATGCTGAGAACCTGGAGAAAATGGTCATTAGGTATTTAGCCGAGCAATCTAATGATATAGGGAAGTTAAAAGAAAGTAAGATGAACTCCAATCCCATGGTTACTTTCGAGGAGTATGAAAGATCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

494

Amino Acids

56.4

Weight (kDa)

5.0

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 66 1.3e-08 F-box domain
F-box-like PF12937 28 - 64 2.4e-07 F-box-like
LRR_At1g61320_AtMIF1 PF23622 130 - 249 1.9e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 134 - 252 2.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 171
AccII CGCG 1 cut(s) 1065
AciI CCGC 1 cut(s) 236
AclI AACGTT 1 cut(s) 871
AclWI GGATC 3 cut(s) 403, 416, 1467
AcsI RAATTY 2 cut(s) 388, 734
AfaI GTAC 3 cut(s) 61, 1094, 1177
AfiI CCNNNNNNNGG 2 cut(s) 171, 910
AflIII ACRYGT 1 cut(s) 1063
AgsI TTSAA 8 cut(s) 262, 437, 640, 670, 716, 764, 800, 922
AjnI CCWGG 4 cut(s) 404, 1229, 1263, 1362
AloI GAACNNNNNNTCC 2 cut(s) 637, 669
AluBI AGCT 8 cut(s) 253, 321, 358, 720, 938, 1034, 1116, 1303
AluI AGCT 8 cut(s) 253, 321, 358, 720, 938, 1034, 1116, 1303
Alw26I GTCTC 3 cut(s) 166, 198, 603
AlwI GGATC 3 cut(s) 403, 416, 1467
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 834, 938, 1046
ApoI RAATTY 2 cut(s) 388, 734
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 839
AsuHPI GGTGA 4 cut(s) 59, 214, 280, 819
AvaI CYCGRG 1 cut(s) 95
BamHI GGATCC 1 cut(s) 408
BanII GRGCYC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 846, 925, 1033
BccI CCATC 4 cut(s) 165, 332, 502, 1046
BceAI ACGGC 1 cut(s) 824
BciT130I CCWGG 4 cut(s) 406, 1231, 1265, 1364
BcoDI GTCTC 3 cut(s) 166, 198, 603
BfaI CTAG 3 cut(s) 147, 831, 1130
BfmI CTRYAG 1 cut(s) 957
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 835, 939, 1047
BlsI GCNGC 3 cut(s) 836, 940, 1048
Bme1390I CCNGG 4 cut(s) 406, 1231, 1265, 1364
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 410, 954
BmrFI CCNGG 4 cut(s) 406, 1231, 1265, 1364
BmsI GCATC 3 cut(s) 510, 531, 1245
BplI GAGNNNNNCTC 2 cut(s) 977, 1009
BpmI CTGGAG 2 cut(s) 979, 1385
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1367
BsaJI CCNNGG 3 cut(s) 96, 1264, 1446
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 910
Bse1I ACTGG 2 cut(s) 37, 996
BseBI CCWGG 4 cut(s) 406, 1231, 1265, 1364
BseDI CCNNGG 3 cut(s) 96, 1264, 1446
BseGI GGATG 3 cut(s) 343, 1226, 1294
BseLI CCNNNNNNNGG 2 cut(s) 171, 910
BseMII CTCAG 2 cut(s) 1292, 1347
BseNI ACTGG 2 cut(s) 37, 996
BseRI GAGGAG 1 cut(s) 1475
BseXI GCAGC 3 cut(s) 846, 925, 1033
BseYI CCCAGC 2 cut(s) 1135, 1310
BsgI GTGCAG 1 cut(s) 1024
Bsh1236I CGCG 1 cut(s) 1065
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 1118, 1196
BslI CCNNNNNNNGG 2 cut(s) 171, 910
BsmAI GTCTC 3 cut(s) 166, 198, 603
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 1118, 1196
BsmI GAATGC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 408, 1126, 1472
Bsp19I CCATGG 1 cut(s) 1446
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 1291, 1348
BspFNI CGCG 1 cut(s) 1065
BspLI GGNNCC 2 cut(s) 410, 954
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 3 cut(s) 403, 416, 1467
BspQI GCTCTTC 2 cut(s) 311, 348
BsrI ACTGG 2 cut(s) 37, 996
BssECI CCNNGG 3 cut(s) 96, 1264, 1446
BssMI GATC 3 cut(s) 408, 1126, 1472
BssT1I CCWWGG 1 cut(s) 1446
Bst2UI CCWGG 4 cut(s) 406, 1231, 1265, 1364
Bst4CI ACNGT 3 cut(s) 64, 347, 553
Bst6I CTCTTC 2 cut(s) 311, 348
BstC8I GCNNGC 3 cut(s) 1051, 1067, 1353
BstDEI CTNAG 5 cut(s) 254, 293, 1278, 1304, 1356
BstDSI CCRYGG 1 cut(s) 1446
BstF5I GGATG 3 cut(s) 343, 1226, 1294
BstFNI CGCG 1 cut(s) 1065
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 1 cut(s) 839
BstKTI GATC 3 cut(s) 411, 1129, 1475
BstMAI GTCTC 3 cut(s) 166, 198, 603
BstMBI GATC 3 cut(s) 408, 1126, 1472
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 4 cut(s) 406, 1231, 1265, 1364
BstNSI RCATGY 2 cut(s) 1053, 1355
BstSCI CCNGG 4 cut(s) 404, 1229, 1263, 1362
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 1065
BstV1I GCAGC 3 cut(s) 846, 925, 1033
BstX2I RGATCY 2 cut(s) 408, 1472
BstXI CCANNNNNNTGG 1 cut(s) 1447
BstYI RGATCY 2 cut(s) 408, 1472
BtgI CCRYGG 1 cut(s) 1446
BtsCI GGATG 3 cut(s) 343, 1226, 1294
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 2 cut(s) 352, 1012
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 3 cut(s) 1051, 1067, 1353
CfoI GCGC 1 cut(s) 839
Csp6I GTAC 3 cut(s) 60, 1093, 1176
CviAII CATG 4 cut(s) 754, 1050, 1352, 1447
CviQI GTAC 3 cut(s) 60, 1093, 1176
DdeI CTNAG 5 cut(s) 254, 293, 1278, 1304, 1356
DpnI GATC 3 cut(s) 410, 1128, 1474
DpnII GATC 3 cut(s) 408, 1126, 1472
DraI TTTAAA 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 311, 348
EarI CTCTTC 2 cut(s) 311, 348
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 1446
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 676
Eco88I CYCGRG 1 cut(s) 95
EcoRII CCWGG 4 cut(s) 404, 1229, 1263, 1362
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 1446
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 1446
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 4 cut(s) 757, 1053, 1355, 1450
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 2 cut(s) 1118, 1196
FatI CATG 4 cut(s) 753, 1049, 1351, 1446
Fnu4HI GCNGC 3 cut(s) 835, 939, 1047
FokI GGATG 3 cut(s) 350, 1213, 1301
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 835, 939, 1047
FspBI CTAG 3 cut(s) 147, 831, 1130
GlaI GCGC 1 cut(s) 838
GluI GCNGC 3 cut(s) 835, 939, 1047
GsaI CCCAGC 2 cut(s) 1139, 1314
GsuI CTGGAG 2 cut(s) 979, 1385
HaeII RGCGCY 1 cut(s) 840
HhaI GCGC 1 cut(s) 839
Hin1II CATG 4 cut(s) 757, 1053, 1355, 1450
Hin6I GCGC 1 cut(s) 837
HinP1I GCGC 1 cut(s) 837
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 1 cut(s) 150
HphI GGTGA 4 cut(s) 59, 214, 280, 819
Hpy166II GTNNAC 3 cut(s) 205, 814, 1176
Hpy188I TCNGA 3 cut(s) 124, 395, 1026
Hpy188III TCNNGA 3 cut(s) 95, 412, 1346
Hpy8I GTNNAC 3 cut(s) 205, 814, 1176
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 44, 664
HpyCH4III ACNGT 3 cut(s) 64, 347, 553
HpyCH4IV ACGT 1 cut(s) 871
HpyCH4V TGCA 9 cut(s) 452, 501, 660, 1005, 1049, 1053, 1069, 1099, 1258
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 5 cut(s) 254, 293, 1278, 1304, 1356
HpySE526I ACGT 1 cut(s) 871
Hsp92II CATG 4 cut(s) 757, 1053, 1355, 1450
HspAI GCGC 1 cut(s) 837
Kzo9I GATC 3 cut(s) 408, 1126, 1472
LguI GCTCTTC 2 cut(s) 311, 348
LmnI GCTCC 2 cut(s) 862, 952
Lsp1109I GCAGC 3 cut(s) 846, 925, 1033
LweI GCATC 3 cut(s) 510, 531, 1245
MaeI CTAG 3 cut(s) 147, 831, 1130
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 4 cut(s) 341, 706, 1291, 1450
MalI GATC 3 cut(s) 410, 1128, 1474
MboI GATC 3 cut(s) 408, 1126, 1472
MboII GAAGA 7 cut(s) 83, 328, 365, 812, 944, 1117, 1264
MflI RGATCY 2 cut(s) 408, 1472
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 388, 734, 748, 849, 917, 922, 1323
MluI ACGCGT 1 cut(s) 1063
MmeI TCCRAC 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 348
MspR9I CCNGG 4 cut(s) 406, 1231, 1265, 1364
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 4 cut(s) 406, 1231, 1265, 1364
MvnI CGCG 1 cut(s) 1065
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 1446
NdeII GATC 3 cut(s) 408, 1126, 1472
NlaIII CATG 4 cut(s) 757, 1053, 1355, 1450
NlaIV GGNNCC 2 cut(s) 410, 954
NmeAIII GCCGAG 1 cut(s) 1417
NmuCI GTSAC 2 cut(s) 341, 706
NspI RCATGY 2 cut(s) 1053, 1355
PaeI GCATGC 2 cut(s) 1053, 1355
PciSI GCTCTTC 2 cut(s) 311, 348
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 3 cut(s) 836, 940, 1048
Psp1406I AACGTT 1 cut(s) 871
Psp6I CCWGG 4 cut(s) 404, 1229, 1263, 1362
PspFI CCCAGC 2 cut(s) 1135, 1310
PspGI CCWGG 4 cut(s) 404, 1229, 1263, 1362
PspN4I GGNNCC 2 cut(s) 410, 954
PsrI GAACNNNNNNTAC 2 cut(s) 972, 1004
PsuI RGATCY 2 cut(s) 408, 1472
RsaI GTAC 3 cut(s) 61, 1094, 1177
RsaNI GTAC 3 cut(s) 60, 1093, 1176
RseI CAYNNNNRTG 1 cut(s) 348
SapI GCTCTTC 2 cut(s) 311, 348
SatI GCNGC 3 cut(s) 835, 939, 1047
Sau3AI GATC 3 cut(s) 408, 1126, 1472
ScrFI CCNGG 4 cut(s) 406, 1231, 1265, 1364
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 3 cut(s) 510, 531, 1245
SfcI CTRYAG 1 cut(s) 957
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
SphI GCATGC 2 cut(s) 1053, 1355
Sse9I AATT 7 cut(s) 388, 734, 748, 849, 917, 922, 1323
SsiI CCGC 1 cut(s) 236
SspMI CTAG 3 cut(s) 147, 831, 1130
StyD4I CCNGG 4 cut(s) 404, 1229, 1263, 1362
StyI CCWWGG 1 cut(s) 1446
TaaI ACNGT 3 cut(s) 64, 347, 553
TaiI ACGT 1 cut(s) 874
TaqI TCGA 1 cut(s) 1458
TasI AATT 7 cut(s) 388, 734, 748, 849, 917, 922, 1323
TatI WGTACW 2 cut(s) 59, 1175
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 2 cut(s) 352, 1012
TseFI GTSAC 2 cut(s) 341, 706
TseI GCWGC 3 cut(s) 834, 938, 1046
Tsp45I GTSAC 2 cut(s) 341, 706
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 352, 1012
Van91I CCANNNNNTGG 1 cut(s) 171
XapI RAATTY 2 cut(s) 388, 734
XceI RCATGY 2 cut(s) 1053, 1355
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 147, 831, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.