Rmu_sc0027615.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027615.1
OG0000241
Physical Location & Seq
Reverse (-)
5976 .. 8072
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027615.1_g000002.1.cds

Sequence Viewer

Length: 1314 bp
atgatggagcagaagcgtatgttattggctactggaagttgtcagggtgaaggaccctgtactgtgaatatgattgacagatttagcaatcttccagagggagtttttcatcacattctttcaaaattcggtattaaagaccttgcccgattctgctgtgtctccaaacgatggagagaattatgcctgtcgtctccgtcggtggaattttttggatttagtgaagatggaattatggatatggcatgtgagcttaggttgaagttggtgaatgcattggataggttcttgcttagtcgtggggataatgagatgaaaagctttgttcttttttgggatggtcacagtgatgaagagcttgacgaagcatgtttctgtgtcaatgagaatttccgaataatcacctggatccagaatgctgtgaggtgtaaagttgaaaaggttcatcttgacgtcaccttttttgattatgagggggagccattggcatttccatcttgcatctttcgttctgcatcattgaggtctatagtggttaatatgccacgtacagttgttaaaacaccctccttcactttttcctccaatatcgaaaagttgcatttaagtgatgttgttatacaggacgaggggtttttcgagtggatttcctattcctgcaaatccttgaaggatgtaactctttcagcagttcgtgagatacatagtatcaccattgaaagctcgtctttggaaagattttatttcattaattacgaggttgatgaaacctgccatattaacatctctgtagatgagtttaacaaagtatttgaggttctttccagtttgtgcagtgttgaagttcttgttctaaatgaagctaccatccaggctgcatacagggaggaatgcatgcaagctcgattggatgagatttggtacttgcaaatgaatattggtagctttgctgatgatctagtcccggcagtcgtctgtcttttaagaggaacaccagagttgtgtactttatacattcgctataaaccaacttcactcgaccctaaatctaatacatctgggtttgatgtggagtattggaagatgcaaaacctggattttgtttctcaggttgaggatgttaccatagagcttagtgctgggtctaatggaattgagttagctaggtatatacttgagcatgctgagagcctggagaaaatggtcattaggtatttggccgagcactctaatgctatagggaagttaaaagaaagtaagatgatctccaatcccttggttactttcgaggaatatgatagatcagttggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

437

Amino Acids

49.99

Weight (kDa)

4.84

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 171
AclWI GGATC 2 cut(s) 403, 416
AcoI YGGCCR 1 cut(s) 1218
AcsI RAATTY 3 cut(s) 125, 206, 388
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 4 cut(s) 61, 550, 923, 1006
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 6 cut(s) 123, 262, 437, 670, 719, 842
AjnI CCWGG 4 cut(s) 404, 870, 1092, 1191
AluBI AGCT 9 cut(s) 253, 321, 358, 723, 863, 902, 945, 1132, 1163
AluI AGCT 9 cut(s) 253, 321, 358, 723, 863, 902, 945, 1132, 1163
Alw21I GWGCWC 1 cut(s) 1227
Alw26I GTCTC 2 cut(s) 166, 198
AlwI GGATC 2 cut(s) 403, 416
AoxI GGCC 1 cut(s) 1218
ApeKI GCWGC 1 cut(s) 875
ApoI RAATTY 3 cut(s) 125, 206, 388
AseI ATTAAT 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 5 cut(s) 59, 280, 394, 448, 703
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 1227
BbvI GCAGC 1 cut(s) 862
BccI CCATC 5 cut(s) 165, 221, 332, 502, 875
BciT130I CCWGG 4 cut(s) 406, 872, 1094, 1193
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 2 cut(s) 166, 198
BfaI CTAG 2 cut(s) 959, 1164
BfmI CTRYAG 3 cut(s) 528, 789, 1236
BfuAI ACCTGC 1 cut(s) 779
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
Bme1390I CCNGG 5 cut(s) 406, 872, 965, 1094, 1193
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 55, 410, 480
BmrFI CCNGG 5 cut(s) 406, 872, 965, 1094, 1193
BmsI GCATC 3 cut(s) 510, 524, 1074
BpmI CTGGAG 1 cut(s) 1214
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 965
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 1275
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 37, 825
BseBI CCWGG 4 cut(s) 406, 872, 1094, 1193
BseDI CCNNGG 1 cut(s) 1275
BseGI GGATG 5 cut(s) 343, 679, 867, 916, 1123
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 1121, 1176
BseNI ACTGG 2 cut(s) 37, 825
BseXI GCAGC 1 cut(s) 862
BseYI CCCAGC 1 cut(s) 1139
BsgI GTGCAG 1 cut(s) 853
BshFI GGCC 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 1227
BsiSI CCGG 1 cut(s) 965
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 166, 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 947
BsmI GAATGC 3 cut(s) 277, 421, 896
BsnI GGCC 1 cut(s) 1220
Bsp1286I GDGCHC 1 cut(s) 1227
Bsp143I GATC 4 cut(s) 408, 955, 1263, 1301
BspANI GGCC 1 cut(s) 1220
BspCNI CTCAG 2 cut(s) 1120, 1177
BspLI GGNNCC 3 cut(s) 55, 410, 480
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 2 cut(s) 403, 416
BspQI GCTCTTC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 37, 825
BssECI CCNNGG 1 cut(s) 1275
BssMI GATC 4 cut(s) 408, 955, 1263, 1301
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 1275
Bst2UI CCWGG 4 cut(s) 406, 872, 1094, 1193
Bst4CI ACNGT 3 cut(s) 64, 347, 553
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 896, 900, 1182
BstDEI CTNAG 5 cut(s) 254, 293, 1107, 1133, 1185
BstF5I GGATG 5 cut(s) 343, 679, 867, 916, 1123
BstKTI GATC 4 cut(s) 411, 958, 1266, 1304
BstMAI GTCTC 2 cut(s) 166, 198
BstMBI GATC 4 cut(s) 408, 955, 1263, 1301
BstNI CCWGG 4 cut(s) 406, 872, 1094, 1193
BstNSI RCATGY 4 cut(s) 249, 372, 898, 1184
BstSCI CCNGG 5 cut(s) 404, 870, 963, 1092, 1191
BstSFI CTRYAG 3 cut(s) 528, 789, 1236
BstV1I GCAGC 1 cut(s) 862
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 1220
BtsCI GGATG 5 cut(s) 343, 679, 867, 916, 1123
BtsI GCAGTG 1 cut(s) 841
BtsIMutI CAGTG 2 cut(s) 352, 841
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 3 cut(s) 896, 900, 1182
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 60, 549, 922, 1005
CviAII CATG 4 cut(s) 246, 369, 895, 1181
CviQI GTAC 4 cut(s) 60, 549, 922, 1005
DdeI CTNAG 5 cut(s) 254, 293, 1107, 1133, 1185
DpnI GATC 4 cut(s) 410, 957, 1265, 1303
DpnII GATC 4 cut(s) 408, 955, 1263, 1301
EaeI YGGCCR 1 cut(s) 1218
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 1275
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 4 cut(s) 404, 870, 1092, 1191
EcoT14I CCWWGG 1 cut(s) 1275
EcoT22I ATGCAT 2 cut(s) 277, 896
ErhI CCWWGG 1 cut(s) 1275
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 4 cut(s) 249, 372, 898, 1184
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 1 cut(s) 947
FatI CATG 4 cut(s) 245, 368, 894, 1180
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 5 cut(s) 350, 686, 854, 923, 1130
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 2 cut(s) 959, 1164
GluI GCNGC 1 cut(s) 876
GsaI CCCAGC 1 cut(s) 1143
GsuI CTGGAG 1 cut(s) 1214
HaeIII GGCC 1 cut(s) 1220
HapII CCGG 1 cut(s) 965
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 4 cut(s) 249, 372, 898, 1184
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 965
HphI GGTGA 5 cut(s) 59, 280, 394, 448, 703
Hpy166II GTNNAC 1 cut(s) 1005
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 4 cut(s) 95, 412, 449, 695
Hpy8I GTNNAC 1 cut(s) 1005
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 44, 580, 664
HpyCH4III ACNGT 3 cut(s) 64, 347, 553
HpyCH4IV ACGT 2 cut(s) 453, 547
HpyF3I CTNAG 5 cut(s) 254, 293, 1107, 1133, 1185
HpySE526I ACGT 2 cut(s) 453, 547
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 4 cut(s) 249, 372, 898, 1184
Kzo9I GATC 4 cut(s) 408, 955, 1263, 1301
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 7, 478
Lsp1109I GCAGC 1 cut(s) 862
LweI GCATC 3 cut(s) 510, 524, 1074
MaeI CTAG 2 cut(s) 959, 1164
MaeII ACGT 2 cut(s) 453, 547
MaeIII GTNAC 5 cut(s) 341, 454, 676, 1120, 1279
MalI GATC 4 cut(s) 410, 957, 1265, 1303
MboI GATC 4 cut(s) 408, 955, 1263, 1301
MboII GAAGA 4 cut(s) 83, 236, 365, 1093
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 1227
MluCI AATT 7 cut(s) 125, 179, 206, 231, 388, 751, 1152
Mph1103I ATGCAT 2 cut(s) 277, 896
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 9 cut(s) 135, 537, 558, 605, 750, 780, 801, 983, 1247
MslI CAYNNNNRTG 3 cut(s) 348, 606, 1230
MspI CCGG 1 cut(s) 965
MspR9I CCNGG 5 cut(s) 406, 872, 965, 1094, 1193
Mva1269I GAATGC 3 cut(s) 277, 421, 896
MvaI CCWGG 4 cut(s) 406, 872, 1094, 1193
NciI CCSGG 1 cut(s) 965
NdeII GATC 4 cut(s) 408, 955, 1263, 1301
NlaIII CATG 4 cut(s) 249, 372, 898, 1184
NlaIV GGNNCC 3 cut(s) 55, 410, 480
NmeAIII GCCGAG 1 cut(s) 1246
NmuCI GTSAC 2 cut(s) 341, 454
NsiI ATGCAT 2 cut(s) 277, 896
NspI RCATGY 4 cut(s) 249, 372, 898, 1184
PaeI GCATGC 2 cut(s) 898, 1184
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 3 cut(s) 277, 421, 896
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 877
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 4 cut(s) 404, 870, 1092, 1191
PspFI CCCAGC 1 cut(s) 1139
PspGI CCWGG 4 cut(s) 404, 870, 1092, 1191
PspN4I GGNNCC 3 cut(s) 55, 410, 480
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 801, 833
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 4 cut(s) 61, 550, 923, 1006
RsaNI GTAC 4 cut(s) 60, 549, 922, 1005
RseI CAYNNNNRTG 3 cut(s) 348, 606, 1230
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 9 cut(s) 135, 537, 558, 605, 750, 780, 801, 983, 1247
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 4 cut(s) 408, 955, 1263, 1301
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 406, 872, 965, 1094, 1193
SduI GDGCHC 1 cut(s) 1227
SfaNI GCATC 3 cut(s) 510, 524, 1074
SfcI CTRYAG 3 cut(s) 528, 789, 1236
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 3 cut(s) 348, 606, 1230
SmlI CTYRAG 1 cut(s) 1175
SmoI CTYRAG 1 cut(s) 1175
SphI GCATGC 2 cut(s) 898, 1184
Sse9I AATT 7 cut(s) 125, 179, 206, 231, 388, 751, 1152
SspI AATATT 1 cut(s) 937
SspMI CTAG 2 cut(s) 959, 1164
StyD4I CCNGG 5 cut(s) 404, 870, 963, 1092, 1191
StyI CCWWGG 1 cut(s) 1275
TaaI ACNGT 3 cut(s) 64, 347, 553
TaiI ACGT 2 cut(s) 456, 550
TaqI TCGA 5 cut(s) 591, 639, 904, 1038, 1287
TasI AATT 7 cut(s) 125, 179, 206, 231, 388, 751, 1152
TatI WGTACW 2 cut(s) 59, 1004
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 9 cut(s) 135, 537, 558, 605, 750, 780, 801, 983, 1247
Tru9I TTAA 9 cut(s) 135, 537, 558, 605, 750, 780, 801, 983, 1247
TscAI CASTG 2 cut(s) 352, 841
TseFI GTSAC 2 cut(s) 341, 454
TseI GCWGC 1 cut(s) 875
Tsp45I GTSAC 2 cut(s) 341, 454
TspDTI ATGAA 8 cut(s) 98, 329, 366, 434, 736, 780, 873, 947
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 352, 841
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 3 cut(s) 125, 206, 388
XceI RCATGY 4 cut(s) 249, 372, 898, 1184
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 2 cut(s) 959, 1164
ZraI GACGTC 1 cut(s) 454
Zsp2I ATGCAT 2 cut(s) 277, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.