MD04G1145400.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000241
Physical Location & Seq
Forward (+)
23420154 .. 23421005
852 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1145400.v1.1.491

Sequence Viewer

Length: 453 bp
ATGTTGGATAGTATTCGTAACTTGCGTATACATTGTGAGAGCTTTAATTACAAGTTTGTTCCTGCAGTGGTCTCTCTTCTTAGGAGAATGCCTAATCTGAATATTTTTACATTCCTTTTTGGAGGGGGTTGGGTCAACATATTAAGTTTGGCAAGTCGCTTTGGTAATGGATACTGGAAACTGCAAAACCTTGCATTCATTCATCAGCTTAAGGAGGTAAGCATAGAGAATTCCTACGGGTCTAATGGAATCGAGTTTGAAAGGTATATTCTCGAGCATGCTCAAAATTTGAAGAAAATATTGTTCATCGAAAGTTGCTCGGATGGTGAGTGGGAGCAGATGATTTCCACTGCCTCAGTTCTTATTCGGCAGGACCCACACAAGATTTACAAAATCCGTGGTCTGGGATCTTACATTTTGTATTGGGACCTGATATATCAAAATCTCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

151

Amino Acids

17.5

Weight (kDa)

8.55

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 1 cut(s) 415
AcsI RAATTY 2 cut(s) 229, 286
AfiI CCNNNNNNNGG 1 cut(s) 403
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 2 cut(s) 260, 292
AluBI AGCT 2 cut(s) 42, 208
AluI AGCT 2 cut(s) 42, 208
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 272
ApoI RAATTY 2 cut(s) 229, 286
AspS9I GGNCC 2 cut(s) 373, 427
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 373, 427
BccI CCATC 1 cut(s) 317
BciVI GTATCC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 373, 427
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 373, 427
BmiI GGNNCC 2 cut(s) 375, 428
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 2 cut(s) 93, 194
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 368
BspLI GGNNCC 2 cut(s) 375, 428
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 407
BssNAI GTATAC 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 80, 355
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BstZ17I GTATAC 1 cut(s) 29
BsuI GTATCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 2 cut(s) 72, 348
BtsIMutI CAGTG 2 cut(s) 72, 348
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 373, 427
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 1 cut(s) 278
CviJI RGCY 2 cut(s) 42, 208
CviKI_1 RGCY 2 cut(s) 42, 208
DdeI CTNAG 2 cut(s) 80, 355
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 373, 427
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 2 cut(s) 373, 427
EcoRI GAATTC 1 cut(s) 229
FaeI CATG 1 cut(s) 281
FaiI YATR 6 cut(s) 29, 140, 224, 267, 279, 436
FaqI GGGAC 1 cut(s) 440
FatI CATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 335
Hin1II CATG 1 cut(s) 281
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 29, 136
Hpy188I TCNGA 3 cut(s) 99, 322, 449
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 29, 136
HpyCH4V TGCA 3 cut(s) 65, 184, 194
HpyF3I CTNAG 2 cut(s) 80, 355
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 5 cut(s) 75, 160, 356, 389, 443
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 2 cut(s) 68, 304
MflI RGATCY 1 cut(s) 407
MluCI AATT 3 cut(s) 46, 229, 286
MnlI CCTC 3 cut(s) 116, 208, 364
MseI TTAA 3 cut(s) 45, 143, 210
MspCI CTTAAG 1 cut(s) 209
Mva1269I GAATGC 2 cut(s) 93, 194
NdeII GATC 1 cut(s) 407
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 375, 428
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 2 cut(s) 93, 194
PfeI GAWTC 1 cut(s) 249
PpuMI RGGWCCY 2 cut(s) 373, 427
Psp5II RGGWCCY 2 cut(s) 373, 427
PspN4I GGNNCC 2 cut(s) 375, 428
PspPI GGNCC 2 cut(s) 373, 427
PspPPI RGGWCCY 2 cut(s) 373, 427
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 407
SaqAI TTAA 3 cut(s) 45, 143, 210
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 2 cut(s) 373, 427
SetI ASST 6 cut(s) 44, 192, 210, 219, 266, 432
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 2 cut(s) 373, 427
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 209, 272
SmoI CTYRAG 2 cut(s) 209, 272
SphI GCATGC 1 cut(s) 281
Sse9I AATT 3 cut(s) 46, 229, 286
SspI AATATT 2 cut(s) 103, 300
TaqI TCGA 3 cut(s) 252, 273, 309
TasI AATT 3 cut(s) 46, 229, 286
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 45, 143, 210
Tru9I TTAA 3 cut(s) 45, 143, 210
TscAI CASTG 2 cut(s) 72, 355
TspDTI ATGAA 3 cut(s) 187, 191, 295
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 72, 355
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 373, 427
XapI RAATTY 2 cut(s) 229, 286
XceI RCATGY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.