RLG00000023942

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000241
Physical Location & Seq
Reverse (-)
30296996 .. 30298657
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023942

Sequence Viewer

Length: 633 bp
ATGGCTAACGCAAGTTGTGAAGCTGAAGGAGGAGGTTGTCTTAAGGATGAGATTATGGTAGGAAGATTTGTTAATCTTCCGGATCAAGTTGTGCATCACATCGTTTCTTTCCTAGCTATCACTGACCTCACTCGTTTCGGCTGTGTGTCCAAGAAGTGTAGAGAACTTTATCTAACAAGTCCATCCTTGAAGTTTGATGAATTTTCCTTGGCTAATACATCCTCATGTTATAAACGGATGAATTTGTTGAGCTTTGTTAATGACCTAGTCCCATGGATGGTCTTTCTTTTCCGAAGAATGCCTAACTTGTGTACCTTGTACATCAAGTCTACTCCACCCCTATCTGACTGCAATTCTCGTCATACATGTGGGTTCTATATGGAATACTGGAAGCAGCAAAACTTCGGTTTTATACTTGAGCTTAATGAGGTTACCATTGAGCTTTCCAGAGGACTAAATGGAATTGAGTTAGCAAGGTATATTCTCGAGCATGCTCAGAATTTGAAGAAAATGGTCATAGTTTGTTTACCGCAGCAGTCTGGTTTTGTTAAAAGGATGTTAGATAAAACTAAGATGATTTCGAATGGCACAGTTGTGTTCAAGGAAAATCGACAAGAGAGAACGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

211

Amino Acids

24.11

Weight (kDa)

8.72

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 56 5.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 329
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 1 cut(s) 530
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 3 cut(s) 200, 241, 499
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 2 cut(s) 313, 320
AfiI CCNNNNNNNGG 1 cut(s) 277
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 3 cut(s) 190, 505, 601
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 5 cut(s) 23, 116, 252, 421, 442
AluI AGCT 5 cut(s) 23, 116, 252, 421, 442
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 394, 532
ApoI RAATTY 3 cut(s) 200, 241, 499
AsuII TTCGAA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 485
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BbvI GCAGC 2 cut(s) 406, 544
BccI CCATC 2 cut(s) 190, 271
BfaI CTAG 2 cut(s) 113, 266
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 395, 533
BlsI GCNGC 2 cut(s) 396, 534
BmeT110I CYCGRG 1 cut(s) 485
BmsI GCATC 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 207, 272
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 392
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 207, 272
BseGI GGATG 6 cut(s) 52, 182, 218, 243, 282, 561
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 406, 544
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 581
Bsp13I TCCGGA 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 1 cut(s) 530
BspCNI CTCAG 1 cut(s) 508
BspEI TCCGGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 581
BspTI CTTAAG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 207, 272
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 207, 272
Bst4CI ACNGT 1 cut(s) 592
BstAFI CTTAAG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 2 cut(s) 495, 570
BstDSI CCRYGG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 6 cut(s) 52, 182, 218, 243, 282, 561
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstNSI RCATGY 2 cut(s) 369, 494
BstPI GGTNACC 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 406, 544
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 6 cut(s) 52, 182, 218, 243, 282, 561
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 312, 319
CviAII CATG 4 cut(s) 225, 273, 366, 491
CviJI RGCY 8 cut(s) 5, 23, 116, 141, 212, 252, 421, 442
CviKI_1 RGCY 8 cut(s) 5, 23, 116, 141, 212, 252, 421, 442
CviQI GTAC 2 cut(s) 312, 319
DdeI CTNAG 2 cut(s) 495, 570
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 207, 272
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 485
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 207, 272
ErhI CCWWGG 2 cut(s) 207, 272
FaeI CATG 4 cut(s) 228, 276, 369, 494
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 224, 272, 365, 490
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 2 cut(s) 395, 533
FokI GGATG 6 cut(s) 59, 169, 205, 250, 289, 568
Fsp4HI GCNGC 2 cut(s) 395, 533
FspBI CTAG 2 cut(s) 113, 266
GluI GCNGC 2 cut(s) 395, 533
HapII CCGG 1 cut(s) 80
Hin1II CATG 4 cut(s) 228, 276, 369, 494
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 312, 330, 527
Hpy188I TCNGA 3 cut(s) 293, 346, 498
Hpy188III TCNNGA 3 cut(s) 80, 447, 485
Hpy8I GTNNAC 3 cut(s) 312, 330, 527
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 94, 351
HpyF3I CTNAG 2 cut(s) 495, 570
Hsp92II CATG 4 cut(s) 228, 276, 369, 494
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 93, 373, 460, 525, 611
Lsp1109I GCAGC 2 cut(s) 406, 544
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 113, 266
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 68, 75, 306, 517
MluCI AATT 5 cut(s) 200, 241, 352, 462, 499
MnlI CCTC 6 cut(s) 23, 26, 137, 232, 421, 443
MroI TCCGGA 1 cut(s) 79
MseI TTAA 5 cut(s) 42, 72, 258, 423, 549
MslI CAYNNNNRTG 3 cut(s) 223, 366, 593
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 272
NdeII GATC 1 cut(s) 82
NlaIII CATG 4 cut(s) 228, 276, 369, 494
NspI RCATGY 2 cut(s) 369, 494
NspV TTCGAA 1 cut(s) 581
OliI CACNNNNGTG 1 cut(s) 593
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 485
PciI ACATGT 1 cut(s) 365
PctI GAATGC 1 cut(s) 303
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 396, 534
PscI ACATGT 1 cut(s) 365
PsiI TTATAA 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 2 cut(s) 313, 320
RsaNI GTAC 2 cut(s) 312, 319
RseI CAYNNNNRTG 3 cut(s) 223, 366, 593
SaqAI TTAA 5 cut(s) 42, 72, 258, 423, 549
SatI GCNGC 2 cut(s) 395, 533
Sau3AI GATC 1 cut(s) 82
SfaNI GCATC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 485
SfuI TTCGAA 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 485
SmiMI CAYNNNNRTG 3 cut(s) 223, 366, 593
SmlI CTYRAG 3 cut(s) 41, 416, 485
SmoI CTYRAG 3 cut(s) 41, 416, 485
SphI GCATGC 1 cut(s) 494
Sse9I AATT 5 cut(s) 200, 241, 352, 462, 499
SsiI CCGC 1 cut(s) 530
SspMI CTAG 2 cut(s) 113, 266
StyI CCWWGG 2 cut(s) 207, 272
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 486, 581, 610
TasI AATT 5 cut(s) 200, 241, 352, 462, 499
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 5 cut(s) 42, 72, 258, 423, 549
Tru9I TTAA 5 cut(s) 42, 72, 258, 423, 549
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 394, 532
TspDTI ATGAA 2 cut(s) 213, 254
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 3 cut(s) 200, 241, 499
XceI RCATGY 2 cut(s) 369, 494
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 2 cut(s) 113, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.