Rh3DG223800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
21023978 .. 21024603
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG223800.1

Sequence Viewer

Length: 432 bp
ATGGTCTCGCTTTTGAAAGGATTGCCTAATTTGAGTACATTGAACATAAATACTGACCCAGTAGAATACTGCCCTAGAACTAATTCATCCGGATATAATGCGGCATATTGGAAATTGCTAAACCTTTCTTTTGTTAATAAACTTAAGGAGGTAAGCATAGAGCTTCCTAATGGGTCTAATGGAGTCGAGTTAGCATGGTATATACTAGATTATGCCCAGAGTTTGAAGAAAATGGTGATTGTTCATTCACCCGAGCAATCTCATTTCAAAAGGAAGTTGCTAAAAAGAAAAAAGATTTCCAATGTCAGAGTTGTCTTTCAGGAAGATCAAAGACGAGGATTGCAGAGCAAATTAGAAGAAGAATATTGTCAAATAAAGGATAACTATGATTTTCCGACTCCAGAGATGTTACTGGAGAAAGTCCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

143

Amino Acids

16.61

Weight (kDa)

9.17

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 1 cut(s) 101
AfaI GTAC 1 cut(s) 37
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 4 cut(s) 16, 43, 226, 268
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 240, 247
AvaI CYCGRG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 75, 206
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 59, 417
BseAI TCCGGA 1 cut(s) 89
BseGI GGATG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 59, 417
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 251
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 59, 417
BssMI GATC 1 cut(s) 325
BstAFI CTTAAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 86
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 195
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
CviQI GTAC 1 cut(s) 36
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 251
FaeI CATG 1 cut(s) 198
FaiI YATR 9 cut(s) 47, 96, 106, 158, 196, 201, 203, 213, 387
FatI CATG 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 75, 206
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 384
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 198
HinfI GANTC 2 cut(s) 183, 397
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 240, 247
Hpy188I TCNGA 2 cut(s) 308, 396
Hpy188III TCNNGA 4 cut(s) 90, 320, 401, 424
HpyCH4V TGCA 1 cut(s) 343
Hsp92II CATG 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 89
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 72, 103, 230, 305, 398, 414
MaeI CTAG 2 cut(s) 75, 206
MaeIII GTNAC 1 cut(s) 408
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 4 cut(s) 238, 335, 368, 371
MluCI AATT 4 cut(s) 28, 82, 113, 350
MlyI GAGTC 2 cut(s) 192, 391
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 2 cut(s) 142, 329
MroI TCCGGA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 2 cut(s) 135, 144
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 90
NdeII GATC 1 cut(s) 325
NlaIII CATG 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 191, 391
PpsI GAGTC 2 cut(s) 191, 391
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 135, 144
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 325
SchI GAGTC 2 cut(s) 192, 391
SetI ASST 3 cut(s) 126, 153, 165
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 4 cut(s) 28, 82, 113, 350
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 365
SspMI CTAG 2 cut(s) 75, 206
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 28, 82, 113, 350
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 135, 144
Tru9I TTAA 2 cut(s) 135, 144
TspDTI ATGAA 2 cut(s) 75, 233
Vha464I CTTAAG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 75, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.