Rroxscaffold_6G00407450

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000241
Physical Location & Seq
Reverse (-)
30115233 .. 30118604
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407450.1

Sequence Viewer

Length: 717 bp
ATGATTCAAGCACCCTCCTTTGCTTTTTCTTCAAATCTCAGATCCTTGGTATTGACAAGTGTTACTATAGTAGATGAGGAGTTTTTCAAATGGATCTCATGCTGCTGCAAGTTCATTGAGGATTTATGTCTGGATTCTGTTTATGGGCCAAAAAATGTCACCATTGAAAGCTCATCTTTAGAGTTATTTCACTTCAAGTGTGCTGCTAATAGTAGGATATGCCATCTTCACATCTCAGGTGAGAAGCTTAAAGAAATAGCTGTGGACTGGAGTTTTAATCCGTATAGGAAAATATCATTTGGTATTCTTGCTCCAAATCTTAAAAGATACAGGTGGACTGGGAATTTGATAAATTACCCAAATCTGGGAAATTTAGTATCTCTAGAAGAAGCTGAGATTCGTCTGAAGCCTAAATTGGATGGCTGGGACAATGTACTTGAGATTCTTTGCAGATTACGTGGTGTTAAAGTTGTTCTTTTAACTGAAGAGGTCACTAAGGTTCTGTTCAAGGGAGGTTCCATGCCATTGCTAAAGAATGTTTGTTATTTGTGTATTCATATTGAAGGCTTTCTTGATACTCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTGAGTACATTAATCATAAAGTCTGACTCATTCTTCGGTGGCCCTCAAGCTGATGTAAGTAAAAGTAGGCTCTCTCCAGTTTCTTCTTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

238

Amino Acids

26.61

Weight (kDa)

8.33

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 36, 101
AcsI RAATTY 2 cut(s) 343, 370
AcuI CTGAAG 2 cut(s) 425, 504
AfaI GTAC 2 cut(s) 435, 628
AfiI CCNNNNNNNGG 2 cut(s) 364, 365
AgsI TTSAA 7 cut(s) 8, 33, 88, 167, 196, 508, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 5 cut(s) 171, 247, 260, 392, 671
AluI AGCT 5 cut(s) 171, 247, 260, 392, 671
AlwI GGATC 2 cut(s) 36, 101
AoxI GGCC 2 cut(s) 146, 661
ApeKI GCWGC 3 cut(s) 102, 105, 203
ApoI RAATTY 2 cut(s) 343, 370
ArsI GACNNNNNNTTYG 6 cut(s) 328, 360, 586, 618, 638, 670
AseI ATTAAT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 2 cut(s) 146, 662
AsuHPI GGTGA 2 cut(s) 151, 251
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BbvI GCAGC 3 cut(s) 89, 92, 190
BccI CCATC 2 cut(s) 231, 413
BfaI CTAG 2 cut(s) 383, 581
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 3 cut(s) 103, 106, 204
BlsI GCNGC 3 cut(s) 104, 107, 205
BmgT120I GGNCC 2 cut(s) 146, 662
BmiI GGNNCC 1 cut(s) 517
BmrI ACTGGG 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 2 cut(s) 289, 681
BpuEI CTTGAG 2 cut(s) 458, 651
BsaAI YACGTR 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 365
Bse1I ACTGG 3 cut(s) 272, 343, 698
Bse3DI GCAATG 2 cut(s) 524, 597
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 364, 365
BseMI GCAATG 2 cut(s) 524, 597
BseMII CTCAG 3 cut(s) 52, 249, 384
BseNI ACTGG 3 cut(s) 272, 343, 698
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 89, 92, 190
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 2 cut(s) 148, 663
BslFI GGGAC 2 cut(s) 440, 569
BslI CCNNNNNNNGG 2 cut(s) 364, 365
BsmFI GGGAC 2 cut(s) 440, 569
BsnI GGCC 2 cut(s) 148, 663
Bsp143I GATC 2 cut(s) 41, 93
BspANI GGCC 2 cut(s) 148, 663
BspCNI CTCAG 3 cut(s) 51, 248, 385
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 36, 101
BsrDI GCAATG 2 cut(s) 524, 597
BsrI ACTGG 3 cut(s) 272, 343, 698
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 41, 93
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 480
BstBAI YACGTR 1 cut(s) 458
BstDEI CTNAG 5 cut(s) 38, 235, 393, 495, 618
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 44, 96
BstMBI GATC 2 cut(s) 41, 93
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 89, 92, 190
BstX2I RGATCY 2 cut(s) 41, 93
BstYI RGATCY 2 cut(s) 41, 93
BsuRI GGCC 2 cut(s) 148, 663
BtsCI GGATG 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 146, 662
Csp6I GTAC 2 cut(s) 434, 627
CviAII CATG 2 cut(s) 99, 520
CviQI GTAC 2 cut(s) 434, 627
DdeI CTNAG 5 cut(s) 38, 235, 393, 495, 618
DpnI GATC 2 cut(s) 43, 95
DpnII GATC 2 cut(s) 41, 93
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 425, 504
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 102, 523
FaiI YATR 9 cut(s) 68, 100, 127, 144, 220, 285, 521, 558, 638
FalI AAGNNNNNCTT 6 cut(s) 160, 192, 459, 491, 555, 587
FaqI GGGAC 2 cut(s) 440, 569
FatI CATG 2 cut(s) 98, 519
Fnu4HI GCNGC 3 cut(s) 103, 106, 204
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 103, 106, 204
FspBI CTAG 2 cut(s) 383, 581
GluI GCNGC 3 cut(s) 103, 106, 204
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 2 cut(s) 289, 681
HaeIII GGCC 2 cut(s) 148, 663
Hin1II CATG 2 cut(s) 102, 523
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 5 cut(s) 4, 134, 397, 442, 647
HphI GGTGA 2 cut(s) 151, 251
Hpy166II GTNNAC 2 cut(s) 265, 336
Hpy188I TCNGA 4 cut(s) 41, 405, 646, 716
Hpy188III TCNNGA 3 cut(s) 131, 383, 572
Hpy8I GTNNAC 2 cut(s) 265, 336
HpyAV CCTTC 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 108, 450, 590
HpyF3I CTNAG 5 cut(s) 38, 235, 393, 495, 618
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 2 cut(s) 102, 523
Kzo9I GATC 2 cut(s) 41, 93
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 9 cut(s) 116, 222, 253, 316, 324, 350, 409, 600, 711
Lsp1109I GCAGC 3 cut(s) 89, 92, 190
MaeI CTAG 2 cut(s) 383, 581
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 3 cut(s) 61, 157, 490
MalI GATC 2 cut(s) 43, 95
MboI GATC 2 cut(s) 41, 93
MboII GAAGA 6 cut(s) 21, 218, 398, 497, 646, 696
MflI RGATCY 2 cut(s) 41, 93
MluCI AATT 4 cut(s) 343, 352, 370, 413
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 8 cut(s) 25, 70, 112, 481, 506, 602, 607, 675
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 6 cut(s) 249, 276, 321, 465, 479, 632
NdeII GATC 2 cut(s) 41, 93
NlaIII CATG 2 cut(s) 102, 523
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 157, 490
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 4 cut(s) 4, 134, 397, 442
PkrI GCNGC 3 cut(s) 104, 107, 205
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Ppu21I YACGTR 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 2 cut(s) 146, 662
PsuI RGATCY 2 cut(s) 41, 93
RsaI GTAC 2 cut(s) 435, 628
RsaNI GTAC 2 cut(s) 434, 627
SaqAI TTAA 6 cut(s) 249, 276, 321, 465, 479, 632
SatI GCNGC 3 cut(s) 103, 106, 204
Sau3AI GATC 2 cut(s) 41, 93
Sau96I GGNCC 2 cut(s) 146, 662
SchI GAGTC 1 cut(s) 641
SfcI CTRYAG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 437, 666
SmoI CTYRAG 2 cut(s) 437, 666
Sse9I AATT 4 cut(s) 343, 352, 370, 413
SspMI CTAG 2 cut(s) 383, 581
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 460
TasI AATT 4 cut(s) 343, 352, 370, 413
TatI WGTACW 2 cut(s) 433, 626
TfiI GAWTC 4 cut(s) 4, 134, 397, 442
Tru1I TTAA 6 cut(s) 249, 276, 321, 465, 479, 632
Tru9I TTAA 6 cut(s) 249, 276, 321, 465, 479, 632
TseFI GTSAC 2 cut(s) 157, 490
TseI GCWGC 3 cut(s) 102, 105, 203
Tsp45I GTSAC 2 cut(s) 157, 490
TspDTI ATGAA 2 cut(s) 103, 545
TspGWI ACGGA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 2 cut(s) 343, 370
XbaI TCTAGA 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 383, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.