MD12G1026400.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000241
Physical Location & Seq
Forward (+)
2974127 .. 2975092
966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1026400.v1.1.491

Sequence Viewer

Length: 966 bp
ATGACTATGGTAGATAGATTCAGTGATCTCCCGATTGGAGTTACTCATCACATCCTTTCCTTCCTTAATATAAGGGACCTCACTTGTTTCAGCATTGCGTCCAAAAGATGCATAGAACTTTATCTGTCAACTCCGTCATTGGATTTCGGTGATTTATTACCGAAGAGAACACCCAAGGGTTCCAGCCACTTTACATGTGAGTTTAGGTTGAAGTTGTTGAGTTCATTGGATAGGTTCTTGCTTAAACGTGGGGATAATAAGATAAAGTACTTTCGTCTGTTTTGGACTGGTCACTTAATCAAAAATAGAGATCGAACACCATGCTTCTGTGTAAATGAGAATTTTCGAATAGTCAATTTAATTCACAATGCAGTGAGGTGTAATGTTGAAGTCCTTGATATTTTTTTGGATGAAAAGTTAGCATTTCCCTTTAGTATCTTCCTTTGTGAAACTTTGAAGTCTCTGGTGATTAATATGCCTTCCGCTGTTAAAACACCTTCGGTTGCTTTTTCCTCCAACCTTGAATACTTGGAGTTGATGAATGTAGAAATAAAAGATGAGGGGTTTTTCAAGTGGATCTCATGTTCCTGCAAATCCATCAAGGAATTAATTCTTTGCGGTCTTGGTCGCACAAAAAATATCACCATTGAAAGCTCGTCCTTGGAAAAATTTGAACTATATGACGGCTTTTGTACCCCAATCCATCTTAACATCTCAGGTGAGAAACTTGAAACCATACGTGTTTCCTGGAGATTCCGTTTGTCTAAAGGCAAATCGTTAAATATTTTTGCTCCAAAACTTAAATATTTGTTTTGGAGGGGGAATGTGATGAAGAAAGCAAACCTGGGAAAATTAGAATGTGTAGAAGAAGCATCTATGTTTCTGGAGCCTAAAGCAGATGACTTTGACAACCTGTTAAAGGTTTTTTGCAGTATGCACAGGGTTGAATATCTTGTTATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

322

Amino Acids

37.12

Weight (kDa)

8.89

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 136 - 270 6.8e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AciI CCGC 2 cut(s) 483, 618
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 340, 668
AfaI GTAC 2 cut(s) 269, 694
AfiI CCNNNNNNNGG 1 cut(s) 919
AflIII ACRYGT 2 cut(s) 194, 739
AgsI TTSAA 9 cut(s) 211, 389, 457, 524, 571, 650, 674, 731, 947
AjnI CCWGG 2 cut(s) 746, 843
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
AluBI AGCT 1 cut(s) 654
AluI AGCT 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 1 cut(s) 584
ApoI RAATTY 2 cut(s) 340, 668
AseI ATTAAT 2 cut(s) 471, 608
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 4 cut(s) 161, 478, 634, 731
AsuII TTCGAA 1 cut(s) 346
AvaII GGWCC 1 cut(s) 76
BccI CCATC 2 cut(s) 605, 711
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 2 cut(s) 748, 845
BcoDI GTCTC 1 cut(s) 465
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 748, 845
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 3 cut(s) 77, 181, 888
BmrFI CCNGG 2 cut(s) 748, 845
BmsI GCATC 2 cut(s) 98, 881
BpmI CTGGAG 2 cut(s) 769, 905
Bpu14I TTCGAA 1 cut(s) 346
BsaAI YACGTR 1 cut(s) 740
BsaJI CCNNGG 3 cut(s) 174, 660, 844
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 919
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 2 cut(s) 748, 845
BseDI CCNNGG 3 cut(s) 174, 660, 844
BseGI GGATG 2 cut(s) 51, 415
BseLI CCNNNNNNNGG 1 cut(s) 919
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 919
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 25, 310, 576
BspACI CCGC 2 cut(s) 483, 618
BspCNI CTCAG 1 cut(s) 728
BspLI GGNNCC 3 cut(s) 77, 181, 888
BspPI GGATC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 174, 660, 844
BssMI GATC 3 cut(s) 25, 310, 576
BssT1I CCWWGG 2 cut(s) 174, 660
Bst2UI CCWGG 2 cut(s) 748, 845
Bst6I CTCTTC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 740
BstBI TTCGAA 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 715
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 2 cut(s) 51, 415
BstKTI GATC 3 cut(s) 28, 313, 579
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 3 cut(s) 25, 310, 576
BstNI CCWGG 2 cut(s) 748, 845
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 746, 843
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BtsCI GGATG 2 cut(s) 51, 415
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 28, 378
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 268, 693
CviAII CATG 3 cut(s) 195, 321, 582
CviJI RGCY 4 cut(s) 186, 654, 687, 889
CviKI_1 RGCY 4 cut(s) 186, 654, 687, 889
CviQI GTAC 2 cut(s) 268, 693
DdeI CTNAG 1 cut(s) 715
DpnI GATC 3 cut(s) 27, 312, 578
DpnII GATC 3 cut(s) 25, 310, 576
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 174, 660
Eco47I GGWCC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 746, 843
EcoT14I CCWWGG 2 cut(s) 174, 660
EcoT22I ATGCAT 1 cut(s) 113
ErhI CCWWGG 2 cut(s) 174, 660
FaeI CATG 3 cut(s) 198, 324, 585
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 194, 320, 581
FokI GGATG 2 cut(s) 38, 422
GsuI CTGGAG 2 cut(s) 769, 905
HgaI GACGC 1 cut(s) 87
Hin1II CATG 3 cut(s) 198, 324, 585
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 18, 753
HphI GGTGA 4 cut(s) 161, 478, 634, 731
Hpy166II GTNNAC 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 31, 884
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 3 cut(s) 70, 489, 507
HpyCH4IV ACGT 2 cut(s) 247, 739
HpyCH4V TGCA 5 cut(s) 111, 371, 591, 930, 937
HpyF3I CTNAG 1 cut(s) 715
HpySE526I ACGT 2 cut(s) 247, 739
Hsp92II CATG 3 cut(s) 198, 324, 585
Kzo9I GATC 3 cut(s) 25, 310, 576
LmnI GCTCC 2 cut(s) 796, 886
LweI GCATC 2 cut(s) 98, 881
MaeII ACGT 2 cut(s) 247, 739
MaeIII GTNAC 2 cut(s) 40, 290
MalI GATC 3 cut(s) 27, 312, 578
MboI GATC 3 cut(s) 25, 310, 576
MboII GAAGA 4 cut(s) 175, 430, 844, 878
MflI RGATCY 1 cut(s) 576
MluCI AATT 8 cut(s) 340, 355, 360, 605, 609, 668, 851, 961
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 5 cut(s) 89, 369, 523, 553, 810
Mph1103I ATGCAT 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 748, 845
MvaI CCWGG 2 cut(s) 748, 845
NdeII GATC 3 cut(s) 25, 310, 576
NlaIII CATG 3 cut(s) 198, 324, 585
NlaIV GGNNCC 3 cut(s) 77, 181, 888
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 1 cut(s) 346
PciI ACATGT 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 18, 753
PfoI TCCNGGA 1 cut(s) 746
Ppu21I YACGTR 1 cut(s) 740
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 194
PshBI ATTAAT 2 cut(s) 471, 608
PsiI TTATAA 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 746, 843
PspGI CCWGG 2 cut(s) 746, 843
PspN4I GGNNCC 3 cut(s) 77, 181, 888
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 2 cut(s) 269, 694
RsaNI GTAC 2 cut(s) 268, 693
Sau3AI GATC 3 cut(s) 25, 310, 576
Sau96I GGNCC 1 cut(s) 76
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 748, 845
SfaNI GCATC 2 cut(s) 98, 881
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 1 cut(s) 76
Sse9I AATT 8 cut(s) 340, 355, 360, 605, 609, 668, 851, 961
SsiI CCGC 2 cut(s) 483, 618
SspI AATATT 2 cut(s) 784, 806
StyD4I CCNGG 2 cut(s) 746, 843
StyI CCWWGG 2 cut(s) 174, 660
TaiI ACGT 2 cut(s) 250, 742
TaqI TCGA 2 cut(s) 313, 346
TasI AATT 8 cut(s) 340, 355, 360, 605, 609, 668, 851, 961
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 18, 753
TscAI CASTG 2 cut(s) 28, 378
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 213, 426, 554, 845
TspGWI ACGGA 2 cut(s) 123, 746
TspRI CASTG 2 cut(s) 28, 378
VpaK11BI GGWCC 1 cut(s) 76
VspI ATTAAT 2 cut(s) 471, 608
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 2 cut(s) 340, 668
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 609
ZrmI AGTACT 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.