FvH4_6g33940

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
26872370 .. 26872723
354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33940.t1

Sequence Viewer

Length: 354 bp
ATGGAACCCAAGCGTAAGGTGATGGCTAGTGCAAGTTGTGAGAATGAGAGTATGAAAGACAGACTAAGTAGTCTTCCTGACGAAGTTGTGCATCACATTCTGTCTATCTCAGGGGCAAAAGAAGTTGATATTCTTGATTTAAAGGACCTCACTTTGTTCAGCTGTGTGTCAAAACGATGCAGACAACTTTTCTTGTCAAATCCGACCTTGCGTTTTGATGTATTTCCGGATGAGTATAGATCCACCTGTGAGGACCGGTTAAGGTTGATGAATTCTTTGGATAGGCTGTTGGCTCATCGTGGTGATAACAAGTTGCTGCTCTTAGATATTTTATGGTATTCACACTGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

6.41

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 226
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 255
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AlwI GGATC 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 271
AsiGI ACCGGT 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 145, 253
AsuHPI GGTGA 2 cut(s) 31, 314
AvaII GGWCC 2 cut(s) 145, 253
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 16
BfaI CTAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 145, 253
BmgT120I GGNCC 2 cut(s) 145, 253
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 100, 167
BpiI GAAGAC 1 cut(s) 65
BsaWI WCCGGW 2 cut(s) 226, 255
Bse118I RCCGGY 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 226
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 255
BsiSI CCGG 2 cut(s) 227, 256
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 122
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 347
BstDEI CTNAG 3 cut(s) 65, 109, 322
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 145, 253
CspAI ACCGGT 1 cut(s) 255
CviJI RGCY 4 cut(s) 26, 162, 286, 293
CviKI_1 RGCY 4 cut(s) 26, 162, 286, 293
DdeI CTNAG 3 cut(s) 65, 109, 322
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DraI TTTAAA 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 145, 253
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 271
FaiI YATR 4 cut(s) 53, 237, 334, 352
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 317
HapII CCGG 2 cut(s) 227, 256
HpaII CCGG 2 cut(s) 227, 256
HphI GGTGA 2 cut(s) 31, 314
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 77, 134, 227
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 32, 91, 180
HpyF3I CTNAG 3 cut(s) 65, 109, 322
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 90, 96, 240, 259, 269
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 100, 167
MaeI CTAG 1 cut(s) 27
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 2 cut(s) 158, 244
MroI TCCGGA 1 cut(s) 226
MseI TTAA 2 cut(s) 140, 260
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 2 cut(s) 227, 256
NdeII GATC 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 6
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 1 cut(s) 318
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 145, 253
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 140, 260
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 2 cut(s) 145, 253
SetI ASST 6 cut(s) 21, 150, 164, 209, 248, 266
SfaNI GCATC 2 cut(s) 100, 167
SinI GGWCC 2 cut(s) 145, 253
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 347
TasI AATT 1 cut(s) 271
Tru1I TTAA 2 cut(s) 140, 260
Tru9I TTAA 2 cut(s) 140, 260
TscAI CASTG 1 cut(s) 350
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 68, 284, 339
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 145, 253
XapI RAATTY 1 cut(s) 271
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.