RLG00000023946

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000241
Physical Location & Seq
Reverse (-)
30337952 .. 30340124
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023946

Sequence Viewer

Length: 594 bp
ATGGAACCCAAGAGTAAGTTGGTGGCTACTGCAAGTTTTGGTGAAGGTAGAGGACGTTGTACTGTGAATGAGAGCAAGAAAGATAGGCTTAGTAATCTTCCAGACGAAATCGTGCACCACATTCTTTCTTCCTCACTTAAAACACCTATCCTTGATATAGAGGACCTCACTATGTTCAGCTGTGTGTCCAAAAGATGCAGACAACTTGTCTTGTCAAACCCGACATTGCGTTTTGATGGATTTCAGAGGACTAGAATATCCACCTGTAGTAAACGGTCAAAGTTGATGAATTCTTTCGATAGGCTGTTGGCTTGCCGCGGGGATTGTAAGTTACAGACATCGGGGTTTAATATGAGACACTGGAAGCTGCAAGACCCAGCTCTTTTCAATCAGCTTAAGGAGTTTACAATAGAGCTCTGGGGAGAACCTAATGGAATTGAACTAGCGAGGTGTATTCTGGAGCATGCTCAGAATTTGGAGAAAATGGTCATTGTTCACCTGCCGCAACATTCTCATATGCTTTTGAAAGAGATTTCTTCAAAGCTTTGGGAGTCACTTGACATTAATATTCTTAAGCCTTCAAATGGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

198

Amino Acids

22.51

Weight (kDa)

8.95

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AccII CGCG 1 cut(s) 318
AciI CCGC 3 cut(s) 316, 318, 503
AcsI RAATTY 2 cut(s) 289, 472
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 584
AflII CTTAAG 2 cut(s) 395, 572
AgsI TTSAA 5 cut(s) 388, 440, 526, 540, 582
AhdI GACNNNNNGTC 1 cut(s) 206
AluBI AGCT 6 cut(s) 180, 367, 380, 394, 415, 544
AluI AGCT 6 cut(s) 180, 367, 380, 394, 415, 544
Alw21I GWGCWC 2 cut(s) 117, 417
Alw26I GTCTC 1 cut(s) 349
Alw44I GTGCAC 1 cut(s) 113
ApaLI GTGCAC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 289, 472
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 53, 488
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 2 cut(s) 117, 417
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 252, 443
BfmI CTRYAG 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 395, 572
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 3 cut(s) 316, 368, 503
BlsI GCNGC 3 cut(s) 317, 369, 504
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 117, 417
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 117, 417
BspACI CCGC 3 cut(s) 316, 318, 503
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 507
BspTI CTTAAG 2 cut(s) 395, 572
BsrDI GCAATG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 64, 276
BstAFI CTTAAG 2 cut(s) 395, 572
BstC8I GCNNGC 2 cut(s) 313, 465
BstDEI CTNAG 2 cut(s) 89, 468
BstDSI CCRYGG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 313, 465
Cfr13I GGNCC 1 cut(s) 163
Cfr42I CCGCGG 1 cut(s) 319
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 464
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 89, 468
DriI GACNNNNNGTC 1 cut(s) 206
Eam1105I GACNNNNNGTC 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 417
FaeI CATG 1 cut(s) 467
FaiI YATR 6 cut(s) 158, 173, 353, 465, 516, 518
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FatI CATG 1 cut(s) 463
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 316, 368, 503
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 3 cut(s) 316, 368, 503
FspBI CTAG 2 cut(s) 252, 443
GluI GCNGC 3 cut(s) 316, 368, 503
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 479
Hin1II CATG 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 1 cut(s) 551
HphI GGTGA 2 cut(s) 53, 488
Hpy166II GTNNAC 4 cut(s) 115, 272, 405, 496
Hpy188I TCNGA 2 cut(s) 246, 471
Hpy188III TCNNGA 2 cut(s) 101, 458
Hpy8I GTNNAC 4 cut(s) 115, 272, 405, 496
HpyAV CCTTC 2 cut(s) 38, 588
HpyCH4III ACNGT 2 cut(s) 64, 276
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 32, 115, 198, 370
HpyF3I CTNAG 2 cut(s) 89, 468
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 467
KspI CCGCGG 1 cut(s) 319
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 7 cut(s) 114, 277, 346, 390, 403, 443, 512
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 252, 443
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 330, 552
MboII GAAGA 3 cut(s) 89, 120, 528
MhlI GDGCHC 2 cut(s) 117, 417
MluCI AATT 3 cut(s) 289, 435, 472
MlyI GAGTC 1 cut(s) 560
MnlI CCTC 6 cut(s) 44, 142, 154, 176, 240, 441
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 6 cut(s) 138, 348, 396, 564, 573, 592
MspA1I CMGCKG 2 cut(s) 180, 318
MspCI CTTAAG 2 cut(s) 395, 572
MvnI CGCG 1 cut(s) 318
NdeI CATATG 1 cut(s) 516
NlaIII CATG 1 cut(s) 467
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 552
NspI RCATGY 1 cut(s) 467
PaeI GCATGC 1 cut(s) 467
PaqCI CACCTGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 317, 369, 504
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 180
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 417
SacII CCGCGG 1 cut(s) 319
SaqAI TTAA 6 cut(s) 138, 348, 396, 564, 573, 592
SatI GCNGC 3 cut(s) 316, 368, 503
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 560
SduI GDGCHC 2 cut(s) 117, 417
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 265
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 395, 572
SmoI CTYRAG 2 cut(s) 395, 572
SphI GCATGC 1 cut(s) 467
Sse9I AATT 3 cut(s) 289, 435, 472
SsiI CCGC 3 cut(s) 316, 318, 503
SspI AATATT 1 cut(s) 568
SspMI CTAG 2 cut(s) 252, 443
SstI GAGCTC 1 cut(s) 417
TaaI ACNGT 2 cut(s) 64, 276
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 297
TasI AATT 3 cut(s) 289, 435, 472
TatI WGTACW 1 cut(s) 59
TauI GCSGC 2 cut(s) 318, 505
Tru1I TTAA 6 cut(s) 138, 348, 396, 564, 573, 592
Tru9I TTAA 6 cut(s) 138, 348, 396, 564, 573, 592
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 365
Vha464I CTTAAG 2 cut(s) 395, 572
VneI GTGCAC 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 2 cut(s) 289, 472
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 2 cut(s) 252, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.