Rmu_sc0003170.1_g000009

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003170.1
OG0000241
Physical Location & Seq
Forward (+)
35399 .. 36082
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003170.1_g000009.1.cds

Sequence Viewer

Length: 684 bp
atggaacgcaagggtaagttattggctagtggaaatggtgagactgacgggtttagcaatcttcccaaggaagtccttgataagattctttcacgtcttctgattaacgacctggctcgcttatgctgcgtgtccaaaacatgcaaagatatgtctctgtccgctccgtctgtgagcatttgtggatttggtgtagatgaaatagcggagatgccgtgtgaagttcggttgaaactggtgaatgcattggataggttcttgcttagtcgcggggataatgagatgcggaaatttactcttgtttgggagggtcatcatgaggacgaggtcgaggaaccgccatgcttctgtgttaatgagagtttccgaatgatcacctggattcagaatgcactgaggtgtaatgttgaaaagctttttattgatatgaccttttatgatcgtgatggggaacttttagcatttccgtcttgcgtctttaattgtgcatctttgaggtctctagtggtagaaatgtcatttacggttgttaaaacaccctcatttacgttctcatctaatcttgagaccttggcattgagcgatgttgatattgcagacgaggggtttttcaagtggccaatatcatgttcgtgcaagctccttaaggaattgcgtcttgcaggacttaaatgggatagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

227

Amino Acids

25.67

Weight (kDa)

5.05

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 1 cut(s) 270
AciI CCGC 5 cut(s) 162, 206, 270, 286, 338
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 1 cut(s) 290
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 3 cut(s) 232, 410, 613
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 2 cut(s) 111, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
AleI CACNNNNGTG 1 cut(s) 397
AluBI AGCT 2 cut(s) 415, 640
AluI AGCT 2 cut(s) 415, 640
Alw26I GTCTC 4 cut(s) 35, 159, 504, 560
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 50, 250, 367
BalI TGGCCA 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 113, 379
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 4 cut(s) 35, 159, 504, 560
BfaI CTAG 2 cut(s) 27, 503
BfrI CTTAAG 1 cut(s) 644
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 113, 379
BmgBI CACGTC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 113, 379
BmsI GCATC 3 cut(s) 201, 273, 497
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 584
BsaI GGTCTC 2 cut(s) 504, 560
BsaJI CCNNGG 2 cut(s) 66, 570
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 113, 379
BseDI CCNNGG 2 cut(s) 66, 570
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 619
BsmAI GTCTC 4 cut(s) 35, 159, 504, 560
BsmI GAATGC 2 cut(s) 247, 394
BsnI GGCC 1 cut(s) 619
Bso31I GGTCTC 2 cut(s) 504, 560
Bsp143I GATC 2 cut(s) 372, 439
BspACI CCGC 5 cut(s) 162, 206, 270, 286, 338
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 336
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 2 cut(s) 504, 560
BsrBI CCGCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 66, 570
BssMI GATC 2 cut(s) 372, 439
BssT1I CCWWGG 2 cut(s) 66, 570
Bst2UI CCWGG 2 cut(s) 113, 379
Bst4CI ACNGT 1 cut(s) 526
BstAFI CTTAAG 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 118, 638
BstDEI CTNAG 2 cut(s) 263, 395
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 375, 442
BstMAI GTCTC 4 cut(s) 35, 159, 504, 560
BstMBI GATC 2 cut(s) 372, 439
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 113, 379
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 111, 377
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 619
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 118, 638
CciI TCATGA 1 cut(s) 316
CseI GACGC 2 cut(s) 463, 644
CviAII CATG 4 cut(s) 141, 317, 342, 627
CviJI RGCY 5 cut(s) 26, 116, 415, 619, 640
CviKI_1 RGCY 5 cut(s) 26, 116, 415, 619, 640
DdeI CTNAG 2 cut(s) 263, 395
DpnI GATC 2 cut(s) 374, 441
DpnII GATC 2 cut(s) 372, 439
EaeI YGGCCR 1 cut(s) 617
Eco130I CCWWGG 2 cut(s) 66, 570
Eco31I GGTCTC 2 cut(s) 504, 560
EcoRII CCWGG 2 cut(s) 111, 377
EcoT14I CCWWGG 2 cut(s) 66, 570
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 66, 570
FaeI CATG 4 cut(s) 144, 320, 345, 630
FaiI YATR 8 cut(s) 124, 142, 152, 318, 343, 428, 438, 628
FatI CATG 4 cut(s) 140, 316, 341, 626
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 2 cut(s) 27, 503
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 619
HgaI GACGC 2 cut(s) 463, 644
Hin1II CATG 4 cut(s) 144, 320, 345, 630
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 85, 382
HphI GGTGA 3 cut(s) 50, 250, 367
Hpy188I TCNGA 3 cut(s) 102, 368, 387
Hpy188III TCNNGA 3 cut(s) 317, 443, 563
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 2 cut(s) 94, 548
HpyCH4V TGCA 7 cut(s) 144, 245, 392, 488, 596, 636, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 263, 395
HpySE526I ACGT 2 cut(s) 94, 548
Hsp92II CATG 4 cut(s) 144, 320, 345, 630
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 372, 439
LmnI GCTCC 2 cut(s) 169, 645
LpnPI CCDG 6 cut(s) 98, 125, 221, 364, 391, 648
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 3 cut(s) 201, 273, 497
MaeI CTAG 2 cut(s) 27, 503
MaeII ACGT 2 cut(s) 94, 548
MalI GATC 2 cut(s) 374, 441
MbiI CCGCTC 1 cut(s) 164
MboI GATC 2 cut(s) 372, 439
MboII GAAGA 2 cut(s) 53, 89
MlsI TGGCCA 1 cut(s) 619
MluCI AATT 3 cut(s) 290, 481, 650
MluNI TGGCCA 1 cut(s) 619
MnlI CCTC 8 cut(s) 301, 313, 319, 325, 390, 489, 550, 595
Mox20I TGGCCA 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 247
MscI TGGCCA 1 cut(s) 619
MseI TTAA 6 cut(s) 105, 354, 480, 531, 645, 669
MslI CAYNNNNRTG 2 cut(s) 397, 631
Msp20I TGGCCA 1 cut(s) 619
MspCI CTTAAG 1 cut(s) 644
MspR9I CCNGG 2 cut(s) 113, 379
Mva1269I GAATGC 2 cut(s) 247, 394
MvaI CCWGG 2 cut(s) 113, 379
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 372, 439
NlaIII CATG 4 cut(s) 144, 320, 345, 630
NlaIV GGNNCC 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 397
PagI TCATGA 1 cut(s) 316
PctI GAATGC 2 cut(s) 247, 394
PfeI GAWTC 2 cut(s) 85, 382
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 111, 377
PspGI CCWGG 2 cut(s) 111, 377
PspN4I GGNNCC 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 326
RseI CAYNNNNRTG 2 cut(s) 397, 631
SaqAI TTAA 6 cut(s) 105, 354, 480, 531, 645, 669
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 372, 439
ScrFI CCNGG 2 cut(s) 113, 379
SfaNI GCATC 3 cut(s) 201, 273, 497
SmiMI CAYNNNNRTG 2 cut(s) 397, 631
SmlI CTYRAG 2 cut(s) 563, 644
SmoI CTYRAG 2 cut(s) 563, 644
Sse9I AATT 3 cut(s) 290, 481, 650
SsiI CCGC 5 cut(s) 162, 206, 270, 286, 338
SspMI CTAG 2 cut(s) 27, 503
StyD4I CCNGG 2 cut(s) 111, 377
StyI CCWWGG 2 cut(s) 66, 570
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 2 cut(s) 97, 551
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 290, 481, 650
TfiI GAWTC 2 cut(s) 85, 382
Tru1I TTAA 6 cut(s) 105, 354, 480, 531, 645, 669
Tru9I TTAA 6 cut(s) 105, 354, 480, 531, 645, 669
TscAI CASTG 1 cut(s) 399
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 2 cut(s) 156, 456
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 644
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 144
XspI CTAG 2 cut(s) 27, 503
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.