RchiOBHm_Chr3g0474011

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000241
Physical Location & Seq
Forward (+)
19740609 .. 19741242
634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43966

Sequence Viewer

Length: 600 bp
ATGCCGTGTGAAGTTCGGTTGAAACTGGTGAATGCATTGGATAGGTTCTTGCTTAGTCGCGGGTATAATGAGATGCGGAAATTTACTCTTGTTTGGGAGGGTCATCATGAGGACGAGGTCGAGGAACCGCCATGCTTCTGTGTTAATGAGAGTTTCCGAATGATCACCTGGATTCAGAATGCACTGAGGTGTAATGTTGAAAAGCTTTTTATTGACATGACCTTTTATGATCGTGATGGGGAACTTTTAGCATTTCCGTCTTGTGTCTTTAATTGTGCATCTTTGAGGTCTCTAGTGGTAGAAATGTCATTTACGGTTGTTAAAACACCCTCATTTACATTCTCATCTAATCTTGAGACCTTGGCATTGAGCGATGTTGATATTGCAGATGAGGGGTTTTTCAAGTGGATATCATGTTCGTGCAAGCTCCTTAAGGAATTGCGTCTTGCAGGACTTAATGGGATAGATAATATCACCATTGAAAGCTTGTCTTTGGAAAAATTTAGTTATATTCATTTCGAGGTGTATGAAACCTGTCGTATTAACATTTCTGGTGAGAAGCTTGAAGAAATACATATTAACTGCAGTAGGGTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

199

Amino Acids

23.02

Weight (kDa)

4.93

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 52 - 192 1.3e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 56 - 175 2.3e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 60, 76, 128
AcsI RAATTY 2 cut(s) 80, 500
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 5 cut(s) 22, 200, 403, 482, 566
AjnI CCWGG 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 4 cut(s) 205, 427, 486, 562
AluI AGCT 4 cut(s) 205, 427, 486, 562
Alw26I GTCTC 2 cut(s) 294, 350
ApoI RAATTY 2 cut(s) 80, 500
AsuHPI GGTGA 4 cut(s) 40, 157, 466, 566
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 294, 350
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 583
BfrI CTTAAG 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 63, 287
BpuEI CTTGAG 1 cut(s) 374
BsaI GGTCTC 2 cut(s) 294, 350
BsaJI CCNNGG 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 294, 350
BsmI GAATGC 2 cut(s) 37, 184
Bso31I GGTCTC 2 cut(s) 294, 350
Bsp143I GATC 2 cut(s) 162, 229
BspACI CCGC 3 cut(s) 60, 76, 128
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 2 cut(s) 294, 350
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 2 cut(s) 162, 229
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 316
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 53, 185
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 2 cut(s) 165, 232
BstMAI GTCTC 2 cut(s) 294, 350
BstMBI GATC 2 cut(s) 162, 229
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 425
CciI TCATGA 1 cut(s) 106
CseI GACGC 1 cut(s) 431
CviAII CATG 4 cut(s) 107, 132, 217, 414
CviJI RGCY 4 cut(s) 205, 427, 486, 562
CviKI_1 RGCY 4 cut(s) 205, 427, 486, 562
DdeI CTNAG 2 cut(s) 53, 185
DpnI GATC 2 cut(s) 164, 231
DpnII GATC 2 cut(s) 162, 229
Eco130I CCWWGG 1 cut(s) 360
Eco31I GGTCTC 2 cut(s) 294, 350
Eco32I GATATC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 110, 135, 220, 417
FaiI YATR 9 cut(s) 66, 108, 133, 218, 228, 415, 510, 528, 576
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FatI CATG 4 cut(s) 106, 131, 216, 413
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 162
FspBI CTAG 1 cut(s) 293
HgaI GACGC 1 cut(s) 431
Hin1II CATG 4 cut(s) 110, 135, 220, 417
HindIII AAGCTT 3 cut(s) 203, 484, 560
HinfI GANTC 1 cut(s) 172
HphI GGTGA 4 cut(s) 40, 157, 466, 566
Hpy188I TCNGA 2 cut(s) 158, 177
Hpy188III TCNNGA 3 cut(s) 107, 233, 353
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 7 cut(s) 35, 182, 278, 386, 423, 449, 585
HpyF3I CTNAG 2 cut(s) 53, 185
Hsp92II CATG 4 cut(s) 110, 135, 220, 417
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 162, 229
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 6 cut(s) 11, 154, 181, 435, 537, 547
LweI GCATC 2 cut(s) 63, 287
MaeI CTAG 1 cut(s) 293
MalI GATC 2 cut(s) 164, 231
MboI GATC 2 cut(s) 162, 229
MboII GAAGA 1 cut(s) 578
MluCI AATT 5 cut(s) 80, 271, 437, 500, 595
MnlI CCTC 9 cut(s) 91, 103, 109, 115, 180, 279, 340, 385, 514
Mph1103I ATGCAT 1 cut(s) 37
MseI TTAA 7 cut(s) 144, 270, 321, 432, 456, 543, 579
MslI CAYNNNNRTG 2 cut(s) 187, 418
MspCI CTTAAG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 169
Mva1269I GAATGC 2 cut(s) 37, 184
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 60
NdeII GATC 2 cut(s) 162, 229
NlaIII CATG 4 cut(s) 110, 135, 220, 417
NlaIV GGNNCC 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 37
OliI CACNNNNGTG 1 cut(s) 187
PagI TCATGA 1 cut(s) 106
PctI GAATGC 2 cut(s) 37, 184
PfeI GAWTC 1 cut(s) 172
PflFI GACNNNGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 587
PsyI GACNNNGTC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 187, 418
SaqAI TTAA 7 cut(s) 144, 270, 321, 432, 456, 543, 579
Sau3AI GATC 2 cut(s) 162, 229
ScrFI CCNGG 1 cut(s) 169
SfaNI GCATC 2 cut(s) 63, 287
SfcI CTRYAG 1 cut(s) 583
SmiMI CAYNNNNRTG 2 cut(s) 187, 418
SmlI CTYRAG 2 cut(s) 353, 431
SmoI CTYRAG 2 cut(s) 353, 431
Sse9I AATT 5 cut(s) 80, 271, 437, 500, 595
SsiI CCGC 3 cut(s) 60, 76, 128
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 120, 519
TasI AATT 5 cut(s) 80, 271, 437, 500, 595
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 7 cut(s) 144, 270, 321, 432, 456, 543, 579
Tru9I TTAA 7 cut(s) 144, 270, 321, 432, 456, 543, 579
TscAI CASTG 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 503, 543
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 431
XapI RAATTY 2 cut(s) 80, 500
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.