Rmu_sc0004507.1_g000045

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000241
Physical Location & Seq
Reverse (-)
204858 .. 206861
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000045.1.cds

Sequence Viewer

Length: 1443 bp
atgaaacaaaggcgtaagttagcaagttgtgaaggtgtaggaggtagtggtgggaatgagagcgggatagacagatttagcgatcttccggatcaagttgcacaccacattctttccttcctggctttgccggacctaagtcgtgtgtgttgtgtgtccaaaaggtgtggagaactttgtatatctgctccctcactgaattttgatgaattttcctcggattctatgtccacgtgttccaggcagctaaagttgttgacttatttggtaaggttcttgtttcgtcgtggggataataagatacagtcctttcgtgtccgttgggaaagtcgctctatgaatgtagatgcaacaccatgcatctgtgatacattgagcacttggatccagaatgcagtacggtgtaatgttgaagtgcttgatcttaagattactttatataacaccgaattggtgttttttccatcttgtgtgtttctctgtgcacctttgaagtctctggtggtggacatgaattatacggtcctcagaactccgtcttctgccttttcctctaatctcaagtacttgcagttgacaaatgtttatatagaagatgaggagtttttcaaatggatctcatgttcctgcaagtgcattggggatttgcatcttagtgttcttgggataaagaacgtcaccattttccggtcatctttggaaaggtttagtttgatttgtggtcctctggatgatatgtgccatttgaatatctcaagtgagaaacttgtggacatagatctcaactggacatttgattcacctagcaacaaatccttaactattgatgccccaaatcttaaatgtttcaaatggattgggaatttgatgaaacacccaaatctgggaaaactagaatgcttagaaacagcttcactttttctgctgcctgaagtagaggacttaaacaaggtacatgaggttctttggagtttacgcagggctccagctcttttgctaaatgaagtggtgattaaggcttcatttagggatgtatctgtgccagcttcaatgtatgatacttcttatttgtgtatatgtatcgaaagctttgttgatgagctggtcccggcattggtctgtgtcttcagaagaacacctactttgagtttgttatgcataaagtctaaaccaccacatgaccctcagtctaatacattcgggtttaatatggaatactggaagctgcaagaccttgcctttaccaatcagcttaagcatctgactttagagctttgcagtgggtctaatggaattgagttggcaaagtatatgctccagtatgctctcaatatgcagagattggttgtgatttgtttgcccatagatctggaggaagttacaaggaaactaaagaaaatcaagatgatttccaatgctgtacttgtcattcagaaaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

480

Amino Acids

54.39

Weight (kDa)

7.7

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 1 cut(s) 63
AclWI GGATC 4 cut(s) 99, 379, 392, 623
AcsI RAATTY 3 cut(s) 199, 209, 862
AcuI CTGAAG 2 cut(s) 951, 1111
AcvI CACGTG 1 cut(s) 234
AfaI GTAC 4 cut(s) 399, 566, 954, 1422
AfiI CCNNNNNNNGG 4 cut(s) 687, 883, 884, 1114
AflII CTTAAG 2 cut(s) 425, 1253
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 6 cut(s) 413, 493, 610, 748, 850, 1050
AhdI GACNNNNNGTC 1 cut(s) 1186
AjnI CCWGG 2 cut(s) 120, 239
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
AluBI AGCT 9 cut(s) 247, 911, 989, 1046, 1089, 1102, 1225, 1252, 1273
AluI AGCT 9 cut(s) 247, 911, 989, 1046, 1089, 1102, 1225, 1252, 1273
Alw21I GWGCWC 2 cut(s) 380, 487
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 4 cut(s) 99, 379, 392, 623
Aor13HI TCCGGA 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 3 cut(s) 244, 925, 1225
ApoI RAATTY 3 cut(s) 199, 209, 862
AspS9I GGNCC 4 cut(s) 133, 523, 722, 1105
AsuC2I CCSGG 1 cut(s) 1109
AsuHPI GGTGA 3 cut(s) 670, 792, 1021
AvaII GGWCC 4 cut(s) 133, 523, 722, 1105
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 1 cut(s) 384
BanII GRGCYC 1 cut(s) 985
BarI GAAGNNNNNNTAC 2 cut(s) 1123, 1155
BbrPI CACGTG 1 cut(s) 234
BbsI GAAGAC 2 cut(s) 531, 1117
Bbv12I GWGCWC 2 cut(s) 380, 487
BbvI GCAGC 3 cut(s) 256, 912, 1212
BccI CCATC 1 cut(s) 472
BciT130I CCWGG 2 cut(s) 122, 241
BcnI CCSGG 1 cut(s) 1109
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 804, 893
BfrI CTTAAG 2 cut(s) 425, 1253
BglII AGATCT 2 cut(s) 778, 1366
BisI GCNGC 3 cut(s) 245, 926, 1226
BlsI GCNGC 3 cut(s) 246, 927, 1227
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 3 cut(s) 122, 241, 1109
Bme18I GGWCC 4 cut(s) 133, 523, 722, 1105
BmeRI GACNNNNNGTC 1 cut(s) 1186
BmgT120I GGNCC 4 cut(s) 133, 523, 722, 1105
BmiI GGNNCC 3 cut(s) 386, 984, 1107
BmrFI CCNGG 3 cut(s) 122, 241, 1109
BmsI GCATC 5 cut(s) 337, 369, 658, 817, 1267
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 531, 1117
BpmI CTGGAG 3 cut(s) 969, 1301, 1391
BpuEI CTTGAG 2 cut(s) 545, 739
BpuMI CCSGG 1 cut(s) 1109
BsaAI YACGTR 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 2 cut(s) 88, 687
Bsc4I CCNNNNNNNGG 4 cut(s) 687, 883, 884, 1114
Bse1I ACTGG 3 cut(s) 791, 1223, 1318
Bse8I GATNNNNATC 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 2 cut(s) 122, 241
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 736, 1036
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 4 cut(s) 687, 883, 884, 1114
BseMII CTCAG 2 cut(s) 541, 1199
BseNI ACTGG 3 cut(s) 791, 1223, 1318
BseRI GAGGAG 1 cut(s) 614
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 3 cut(s) 256, 912, 1212
BsiHKAI GWGCWC 2 cut(s) 380, 487
BsiSI CCGG 4 cut(s) 89, 131, 688, 1109
BslFI GGGAC 1 cut(s) 1091
BslI CCNNNNNNNGG 4 cut(s) 687, 883, 884, 1114
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 1091
BsmI GAATGC 2 cut(s) 397, 902
Bsp1286I GDGCHC 3 cut(s) 380, 487, 985
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
BspACI CCGC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 540, 1198
BspEI TCCGGA 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 386, 984, 1107
BspPI GGATC 4 cut(s) 99, 379, 392, 623
BspTI CTTAAG 2 cut(s) 425, 1253
BsrBI CCGCTC 1 cut(s) 63
BsrI ACTGG 3 cut(s) 791, 1223, 1318
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
Bst2UI CCWGG 2 cut(s) 122, 241
Bst4CI ACNGT 3 cut(s) 306, 402, 523
BstAFI CTTAAG 2 cut(s) 425, 1253
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 5 cut(s) 137, 527, 653, 901, 1185
BstF5I GGATG 2 cut(s) 736, 1036
BstKTI GATC 7 cut(s) 85, 94, 387, 424, 618, 781, 1369
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
BstNI CCWGG 2 cut(s) 122, 241
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 120, 239, 1107
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 256, 912, 1212
BstV2I GAAGAC 2 cut(s) 531, 1117
BstX2I RGATCY 4 cut(s) 384, 615, 778, 1366
BstXI CCANNNNNNTGG 1 cut(s) 1369
BstYI RGATCY 4 cut(s) 384, 615, 778, 1366
BtsCI GGATG 2 cut(s) 736, 1036
BtsI GCAGTG 1 cut(s) 1285
BtsIMutI CAGTG 2 cut(s) 194, 1285
Cac8I GCNNGC 1 cut(s) 1044
Cfr13I GGNCC 4 cut(s) 133, 523, 722, 1105
Csp6I GTAC 4 cut(s) 398, 565, 953, 1421
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 5 cut(s) 357, 511, 621, 956, 1178
CviQI GTAC 4 cut(s) 398, 565, 953, 1421
DdeI CTNAG 5 cut(s) 137, 527, 653, 901, 1185
DpnI GATC 7 cut(s) 84, 93, 386, 423, 617, 780, 1368
DpnII GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
DriI GACNNNNNGTC 1 cut(s) 1186
Eam1105I GACNNNNNGTC 1 cut(s) 1186
Eco24I GRGCYC 1 cut(s) 985
Eco47I GGWCC 4 cut(s) 133, 523, 722, 1105
Eco57I CTGAAG 2 cut(s) 951, 1111
Eco72I CACGTG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 120, 239
EcoT22I ATGCAT 2 cut(s) 362, 1160
EcoT38I GRGCYC 1 cut(s) 985
FaeI CATG 5 cut(s) 360, 514, 624, 959, 1181
FaqI GGGAC 1 cut(s) 1091
FatI CATG 5 cut(s) 356, 510, 620, 955, 1177
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 3 cut(s) 245, 926, 1226
FokI GGATG 2 cut(s) 743, 1043
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 3 cut(s) 245, 926, 1226
FspBI CTAG 2 cut(s) 804, 893
GluI GCNGC 3 cut(s) 245, 926, 1226
GsuI CTGGAG 3 cut(s) 969, 1301, 1391
HapII CCGG 4 cut(s) 89, 131, 688, 1109
Hin1II CATG 5 cut(s) 360, 514, 624, 959, 1181
HincII GTYRAC 2 cut(s) 258, 576
HindII GTYRAC 2 cut(s) 258, 576
HindIII AAGCTT 1 cut(s) 1087
HinfI GANTC 2 cut(s) 221, 797
HpaII CCGG 4 cut(s) 89, 131, 688, 1109
HphI GGTGA 3 cut(s) 670, 792, 1021
Hpy166II GTNNAC 7 cut(s) 231, 258, 485, 508, 576, 772, 974
Hpy188I TCNGA 5 cut(s) 220, 530, 1130, 1263, 1434
Hpy188III TCNNGA 5 cut(s) 89, 388, 728, 1370, 1402
Hpy8I GTNNAC 7 cut(s) 231, 258, 485, 508, 576, 772, 974
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 26, 127
HpyCH4III ACNGT 3 cut(s) 306, 402, 523
HpyCH4IV ACGT 2 cut(s) 233, 675
HpyF3I CTNAG 5 cut(s) 137, 527, 653, 901, 1185
HpySE526I ACGT 2 cut(s) 233, 675
Hsp92II CATG 5 cut(s) 360, 514, 624, 959, 1181
Kpn2I TCCGGA 1 cut(s) 88
Kzo9I GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
LmnI GCTCC 3 cut(s) 193, 988, 1320
Lsp1109I GCAGC 3 cut(s) 256, 912, 1212
LweI GCATC 5 cut(s) 337, 369, 658, 817, 1267
MaeI CTAG 2 cut(s) 804, 893
MaeII ACGT 2 cut(s) 233, 675
MaeIII GTNAC 2 cut(s) 676, 1378
MalI GATC 7 cut(s) 84, 93, 386, 423, 617, 780, 1368
MbiI CCGCTC 1 cut(s) 63
MboI GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
MboII GAAGA 5 cut(s) 77, 531, 605, 1117, 1143
MflI RGATCY 4 cut(s) 384, 615, 778, 1366
MhlI GDGCHC 3 cut(s) 380, 487, 985
MluCI AATT 6 cut(s) 199, 209, 449, 514, 862, 1293
Mph1103I ATGCAT 2 cut(s) 362, 1160
MroI TCCGGA 1 cut(s) 88
MseI TTAA 7 cut(s) 426, 818, 840, 944, 1014, 1206, 1254
MslI CAYNNNNRTG 1 cut(s) 654
MspCI CTTAAG 2 cut(s) 425, 1253
MspI CCGG 4 cut(s) 89, 131, 688, 1109
MspR9I CCNGG 3 cut(s) 122, 241, 1109
Mva1269I GAATGC 2 cut(s) 397, 902
MvaI CCWGG 2 cut(s) 122, 241
NciI CCSGG 1 cut(s) 1109
NdeII GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
NlaIII CATG 5 cut(s) 360, 514, 624, 959, 1181
NlaIV GGNNCC 3 cut(s) 386, 984, 1107
NmuCI GTSAC 1 cut(s) 676
NsiI ATGCAT 2 cut(s) 362, 1160
PctI GAATGC 2 cut(s) 397, 902
PfeI GAWTC 2 cut(s) 221, 797
PkrI GCNGC 3 cut(s) 246, 927, 1227
PmaCI CACGTG 1 cut(s) 234
PmlI CACGTG 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 234
PshAI GACNNNNGTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 120, 239
PspCI CACGTG 1 cut(s) 234
PspGI CCWGG 2 cut(s) 120, 239
PspN4I GGNNCC 3 cut(s) 386, 984, 1107
PspPI GGNCC 4 cut(s) 133, 523, 722, 1105
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
PsuI RGATCY 4 cut(s) 384, 615, 778, 1366
RsaI GTAC 4 cut(s) 399, 566, 954, 1422
RsaNI GTAC 4 cut(s) 398, 565, 953, 1421
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 7 cut(s) 426, 818, 840, 944, 1014, 1206, 1254
SatI GCNGC 3 cut(s) 245, 926, 1226
Sau3AI GATC 7 cut(s) 82, 91, 384, 421, 615, 778, 1366
Sau96I GGNCC 4 cut(s) 133, 523, 722, 1105
ScaI AGTACT 1 cut(s) 566
ScrFI CCNGG 3 cut(s) 122, 241, 1109
SduI GDGCHC 3 cut(s) 380, 487, 985
SfaNI GCATC 5 cut(s) 337, 369, 658, 817, 1267
SinI GGWCC 4 cut(s) 133, 523, 722, 1105
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 4 cut(s) 425, 560, 754, 1253
SmoI CTYRAG 4 cut(s) 425, 560, 754, 1253
Sse9I AATT 6 cut(s) 199, 209, 449, 514, 862, 1293
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 804, 893
StyD4I CCNGG 3 cut(s) 120, 239, 1107
TaaI ACNGT 3 cut(s) 306, 402, 523
TaiI ACGT 2 cut(s) 236, 678
TaqI TCGA 1 cut(s) 1083
TasI AATT 6 cut(s) 199, 209, 449, 514, 862, 1293
TatI WGTACW 2 cut(s) 564, 1420
TfiI GAWTC 2 cut(s) 221, 797
Tru1I TTAA 7 cut(s) 426, 818, 840, 944, 1014, 1206, 1254
Tru9I TTAA 7 cut(s) 426, 818, 840, 944, 1014, 1206, 1254
TscAI CASTG 2 cut(s) 201, 1285
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 3 cut(s) 244, 925, 1225
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 7 cut(s) 17, 222, 353, 527, 884, 1011, 1017
TspGWI ACGGA 2 cut(s) 308, 525
TspRI CASTG 2 cut(s) 201, 1285
Vha464I CTTAAG 2 cut(s) 425, 1253
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 4 cut(s) 133, 523, 722, 1105
XapI RAATTY 3 cut(s) 199, 209, 862
XspI CTAG 2 cut(s) 804, 893
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 2 cut(s) 362, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.