Rh3AG189200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000241
Physical Location & Seq
Forward (+)
18134441 .. 18136375
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG189200.1

Sequence Viewer

Length: 363 bp
ATGGAAGACAGGGGGAAGCGTAAGTTGTTGGCCACTGCAAGTTGTCAAGGCCAAGCAGTTAGAGCTGTTACCGAGGGTTTAATTGATAGGCTGAGATACTGGAAGCTGCAAAACGCTGCTTTTATTTATCAGCTTAAGGAGGTTACCATAGAGCTCTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATTCTTGAACATGCTCAGAATTTGATTAAGATGACTATTGTGCATTCTCCCCGGCAGTCTAATGCTATGAGGAAGTTAAATACAAGCAAGATGACTTCCAATATCACACTTGACTTTCAGGAAGATCAAAGAAGAGGACCTCAGAAGCAAAGAGGAAGAAGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

120

Amino Acids

13.86

Weight (kDa)

10.38

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 211
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 4 cut(s) 65, 106, 133, 154
AluI AGCT 4 cut(s) 65, 106, 133, 154
Alw21I GWGCWC 1 cut(s) 156
AoxI GGCC 2 cut(s) 30, 49
ApeKI GCWGC 2 cut(s) 106, 116
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 93, 103
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 107, 117
BlsI GCNGC 2 cut(s) 108, 118
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 72, 160, 242
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 72, 160, 242
BseMII CTCAG 3 cut(s) 83, 221, 347
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 93, 103
BshFI GGCC 2 cut(s) 32, 51
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 244
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 2 cut(s) 32, 51
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 160
BspANI GGCC 2 cut(s) 32, 51
BspCNI CTCAG 3 cut(s) 84, 220, 346
BspTI CTTAAG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 72, 160, 242
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 319
BstAFI CTTAAG 1 cut(s) 134
BstDEI CTNAG 3 cut(s) 92, 207, 333
BstDSI CCRYGG 1 cut(s) 160
BstEII GGTNACC 1 cut(s) 142
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 93, 103
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 32, 51
BtgI CCRYGG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 329
CviAII CATG 2 cut(s) 161, 203
CviJI RGCY 7 cut(s) 32, 51, 65, 91, 106, 133, 154
CviKI_1 RGCY 7 cut(s) 32, 51, 65, 91, 106, 133, 154
DdeI CTNAG 3 cut(s) 92, 207, 333
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 164, 206
FaiI YATR 5 cut(s) 149, 162, 192, 204, 260
FatI CATG 2 cut(s) 160, 202
Fnu4HI GCNGC 2 cut(s) 107, 117
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 107, 117
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 107, 117
HaeIII GGCC 2 cut(s) 32, 51
HapII CCGG 1 cut(s) 244
Hin1II CATG 2 cut(s) 164, 206
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 210, 336, 362
Hpy188III TCNNGA 2 cut(s) 197, 311
HpyAV CCTTC 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 38, 109, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 92, 207, 333
Hsp92II CATG 2 cut(s) 164, 206
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 3 cut(s) 85, 257, 296
Lsp1109I GCAGC 2 cut(s) 93, 103
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 67, 142
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 4 cut(s) 17, 326, 336, 360
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 2 cut(s) 81, 211
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 6 cut(s) 67, 133, 255, 320, 338, 342
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 4 cut(s) 80, 135, 219, 269
Msp20I TGGCCA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 160
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 164, 206
NspI RCATGY 1 cut(s) 206
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 108, 118
PpuMI RGGWCCY 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 329
PspEI GGTNACC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 329
PspPPI RGGWCCY 1 cut(s) 329
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 4 cut(s) 80, 135, 219, 269
SatI GCNGC 2 cut(s) 107, 117
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 67, 108, 135, 144, 156, 334
SinI GGWCC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 81, 211
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 81, 211
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 4 cut(s) 80, 135, 219, 269
Tru9I TTAA 4 cut(s) 80, 135, 219, 269
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 106, 116
TspRI CASTG 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.