RLG00000023848

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
29134286 .. 29136353
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023848

Sequence Viewer

Length: 699 bp
ATGGCAGCTCCAAGTTGTAGTGAGGTAGACAGGTTTAGTGATCTTCCAGACGGAGTTGCCCATCACATTCTCTCCTTCCTTAGAATATCAGACGTCGCTCGTTTTGGCTGTGTGTCAAAAAGATGCGGACGACTTCATCTGTCAACTCCCACATTGAAATTTGAAGGATTTTCGTGGGCGAGTTTATCTACAGTGGATAAGATGTTAAGATTACCTAGAATGAAAATTCTTATTAATGTTGTTAGTCAGTCCAAAAAGAATACTAATGCTTTGTTCGAGAAAGGTTCCATGCCAGCACCTTTAGATAATGTTCGTCAACTGCAGCTTGATGTTGGGTACTTCTGTGATCACCTAGTCCCGGCCATGGTCTTGCTTTTGAAAGGATTGCCTAATTTGAGTACATTGAACATAAATACTTACCCAGTAGAATTCTGCCCTAGAACTAATTCATCCGGATATAATGCGGCATATTGGAAATTGCTAAACCTTGCTTTTGTTAATAAACTTGAGGAGGTAAGCATCGAGCTTCCTAATGGGTCTAATGGAATCGAGTTAGCATGGAAGATCAAAGAAGAGGAATTGCAGAGCAAATTAGAAGAAGATTGTCAAATAAAGGATAACTATGATTTTCCGACTCCAGAGATGTTACTGGAGAAAGTCCTGAAGTTGTACATTACAAGGATTCCTCTACTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

233

Amino Acids

26.13

Weight (kDa)

6.89

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 452
AciI CCGC 2 cut(s) 126, 464
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 3 cut(s) 158, 225, 428
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 338, 400, 671
AfiI CCNNNNNNNGG 3 cut(s) 358, 364, 692
AgsI TTSAA 4 cut(s) 157, 164, 379, 406
AluBI AGCT 3 cut(s) 8, 325, 526
AluI AGCT 3 cut(s) 8, 325, 526
Aor13HI TCCGGA 1 cut(s) 452
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 5, 322
ApoI RAATTY 3 cut(s) 158, 225, 428
AseI ATTAAT 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BbvI GCAGC 2 cut(s) 17, 334
BccI CCATC 1 cut(s) 69
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 359
BfaI CTAG 3 cut(s) 216, 353, 438
BfmI CTRYAG 2 cut(s) 189, 320
BisI GCNGC 3 cut(s) 6, 323, 465
BlsI GCNGC 3 cut(s) 7, 324, 466
Bme1390I CCNGG 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 359
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 113, 528
BmuI ACTGGG 1 cut(s) 416
BpmI CTGGAG 2 cut(s) 621, 671
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 358, 364, 692
Bse1I ACTGG 3 cut(s) 422, 654, 696
BseAI TCCGGA 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 3 cut(s) 358, 364, 692
BseNI ACTGG 3 cut(s) 422, 654, 696
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 17, 334
BshFI GGCC 1 cut(s) 362
BsiSI CCGG 2 cut(s) 359, 453
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 3 cut(s) 358, 364, 692
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 452
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 3 cut(s) 40, 346, 564
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 2 cut(s) 126, 464
BspANI GGCC 1 cut(s) 362
BspEI TCCGGA 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 3 cut(s) 422, 654, 696
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 40, 346, 564
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 449
BstKTI GATC 3 cut(s) 43, 349, 567
BstMBI GATC 3 cut(s) 40, 346, 564
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 2 cut(s) 189, 320
BstV1I GCAGC 2 cut(s) 17, 334
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 294
Csp6I GTAC 3 cut(s) 337, 399, 670
CviAII CATG 3 cut(s) 289, 364, 558
CviJI RGCY 5 cut(s) 8, 108, 325, 362, 526
CviKI_1 RGCY 5 cut(s) 8, 108, 325, 362, 526
CviQI GTAC 3 cut(s) 337, 399, 670
DdeI CTNAG 1 cut(s) 80
DpnI GATC 3 cut(s) 42, 348, 566
DpnII GATC 3 cut(s) 40, 346, 564
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 292, 367, 561
FaiI YATR 7 cut(s) 290, 365, 410, 459, 469, 559, 624
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 288, 363, 557
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 6, 323, 465
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 3 cut(s) 6, 323, 465
FspBI CTAG 3 cut(s) 216, 353, 438
GluI GCNGC 3 cut(s) 6, 323, 465
GsuI CTGGAG 2 cut(s) 621, 671
HaeIII GGCC 1 cut(s) 362
HapII CCGG 2 cut(s) 359, 453
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 292, 367, 561
HincII GTYRAC 2 cut(s) 144, 317
HindII GTYRAC 2 cut(s) 144, 317
HinfI GANTC 3 cut(s) 546, 634, 682
HpaII CCGG 2 cut(s) 359, 453
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 3 cut(s) 28, 144, 317
Hpy188I TCNGA 2 cut(s) 91, 633
Hpy188III TCNNGA 5 cut(s) 47, 277, 453, 638, 661
Hpy8I GTNNAC 3 cut(s) 28, 144, 317
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 85, 158
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 322, 583
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 292, 367, 561
Kpn2I TCCGGA 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 40, 346, 564
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 17, 334
LweI GCATC 2 cut(s) 113, 528
MaeI CTAG 3 cut(s) 216, 353, 438
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 645
MalI GATC 3 cut(s) 42, 348, 566
MboI GATC 3 cut(s) 40, 346, 564
MboII GAAGA 5 cut(s) 35, 574, 584, 608, 611
MluCI AATT 8 cut(s) 158, 225, 391, 428, 445, 476, 578, 590
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 5 cut(s) 16, 502, 505, 568, 696
MroI TCCGGA 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 206, 234, 498
MspI CCGG 2 cut(s) 359, 453
MspR9I CCNGG 1 cut(s) 359
NciI CCSGG 1 cut(s) 359
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 40, 346, 564
NlaIII CATG 3 cut(s) 292, 367, 561
NlaIV GGNNCC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 546, 682
PkrI GCNGC 3 cut(s) 7, 324, 466
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
PshBI ATTAAT 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 286
PstI CTGCAG 1 cut(s) 324
RsaI GTAC 3 cut(s) 338, 400, 671
RsaNI GTAC 3 cut(s) 337, 399, 670
SaqAI TTAA 3 cut(s) 206, 234, 498
SatI GCNGC 3 cut(s) 6, 323, 465
Sau3AI GATC 3 cut(s) 40, 346, 564
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 359
SfaNI GCATC 2 cut(s) 113, 528
SfcI CTRYAG 2 cut(s) 189, 320
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 8 cut(s) 158, 225, 391, 428, 445, 476, 578, 590
SsiI CCGC 2 cut(s) 126, 464
SspMI CTAG 3 cut(s) 216, 353, 438
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 276, 522, 549
TasI AATT 8 cut(s) 158, 225, 391, 428, 445, 476, 578, 590
TatI WGTACW 2 cut(s) 398, 669
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 546, 682
Tru1I TTAA 3 cut(s) 206, 234, 498
Tru9I TTAA 3 cut(s) 206, 234, 498
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 5, 322
TspDTI ATGAA 3 cut(s) 125, 236, 438
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 198
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 3 cut(s) 158, 225, 428
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 3 cut(s) 216, 353, 438
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.