FvH4_6g18982

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
12593575 .. 12599480
5906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18982.t1

Sequence Viewer

Length: 654 bp
ATGAATAGCCAAAATCTGGGGAGATTTGTCTGTTTGGAGCATGCTGAAATTTTTCTGGGATATGAAGTGAATTATGACATTGAAAATATATCCAAGTTTCTTTGCAGTATATGCATGGCTAAATTTGTTATTCTCAGCGAATTAACCATCAAGGCTTTGCTGAGCGAAGGTTCTATTAAGGCTCCATTAAGTGATATCCGTAAGCTGGGTTTGCCTCTGAGTAGTTTGAATGATGAACTAGTTCCAACAGCGGTCTCTCTTCTGAAGGGAATGCCTAATTTGAATACTTTGTACTTAAAGTGCACTCAATTCTCAGGGCTTGCTAATTCTGTATGTTCCGGGTTTGATATGGATTCTTGGAAGTTGCAAAGGCTTTCTTTCATTTATCAGCTGAAAGAGGCAACACTATGGCTCCCCAGTGGATCTAATGGAATTGAGTTTGCAAGGTATATCCTTGAGAATGCTCCAAATTTGGAGAAAATGGTCATAGTTCATTTTGTGAAACAATTTGCTGCTTCATCCTCTCCCATATATAAGATTTCAGAAACACTGCAATCATATTCTGCAAAATTAGGGTTCTTGTGCTTCCGTTGTGAACTCTTAATCCATCGAATTCCAGCTGTTGGGTACATCAATGGTGATTTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

218

Amino Acids

24.26

Weight (kDa)

6.81

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 16, 623
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 4 cut(s) 48, 122, 469, 612
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 293, 629
AfiI CCNNNNNNNGG 3 cut(s) 16, 205, 623
AgsI TTSAA 3 cut(s) 83, 229, 283
AhlI ACTAGT 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 205, 391, 620
AluI AGCT 3 cut(s) 205, 391, 620
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 1 cut(s) 430
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 4 cut(s) 48, 122, 469, 612
Asp700I GAANNNNTTC 2 cut(s) 51, 240
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 155, 615
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 259
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 513
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 183, 413
BmrFI CCNGG 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 205, 623
Bse1I ACTGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 518
BseLI CCNNNNNNNGG 3 cut(s) 16, 205, 623
BseMII CTCAG 4 cut(s) 148, 152, 209, 327
BseNI ACTGG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 499
BseYI CCCAGC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 16, 205, 623
BsmAI GTCTC 1 cut(s) 259
BsmI GAATGC 2 cut(s) 276, 466
Bso31I GGTCTC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 422
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 4 cut(s) 147, 153, 210, 326
BspLI GGNNCC 2 cut(s) 183, 413
BspPI GGATC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 417
BssMI GATC 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 42, 321
BstDEI CTNAG 4 cut(s) 134, 161, 218, 313
BstF5I GGATG 1 cut(s) 518
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 111, 211
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BtsCI GGATG 1 cut(s) 518
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 2 cut(s) 424, 548
Cac8I GCNNGC 2 cut(s) 42, 321
Csp6I GTAC 2 cut(s) 292, 628
CviAII CATG 2 cut(s) 41, 115
CviQI GTAC 2 cut(s) 292, 628
DdeI CTNAG 4 cut(s) 134, 161, 218, 313
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 612
EcoRV GATATC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 116
FaeI CATG 2 cut(s) 44, 118
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 2 cut(s) 40, 114
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 505
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 513
GsaI CCCAGC 1 cut(s) 209
HapII CCGG 1 cut(s) 339
Hin1II CATG 2 cut(s) 44, 118
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 2 cut(s) 303, 596
Hpy188I TCNGA 3 cut(s) 219, 264, 544
Hpy8I GTNNAC 2 cut(s) 303, 596
HpyAV CCTTC 2 cut(s) 161, 259
HpyCH4V TGCA 7 cut(s) 105, 114, 303, 367, 443, 553, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 211
HpyF3I CTNAG 4 cut(s) 134, 161, 218, 313
Hsp92II CATG 2 cut(s) 44, 118
Kzo9I GATC 1 cut(s) 422
LmnI GCTCC 4 cut(s) 37, 187, 417, 469
LpnPI CCDG 7 cut(s) 2, 41, 191, 300, 352, 430, 630
Lsp1109I GCAGC 1 cut(s) 499
MaeI CTAG 1 cut(s) 239
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 3 cut(s) 225, 391, 532
Mph1103I ATGCAT 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 51, 240
MseI TTAA 5 cut(s) 143, 177, 188, 296, 602
MspA1I CMGCKG 3 cut(s) 251, 391, 620
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 276, 466
MwoI GCNNNNNNNGC 2 cut(s) 111, 211
NciI CCSGG 1 cut(s) 340
NdeII GATC 1 cut(s) 422
NlaIII CATG 2 cut(s) 44, 118
NlaIV GGNNCC 2 cut(s) 183, 413
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 1 cut(s) 44
PaeI GCATGC 1 cut(s) 44
PctI GAATGC 2 cut(s) 276, 466
PdmI GAANNNNTTC 2 cut(s) 51, 240
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 2 cut(s) 16, 623
PkrI GCNGC 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 183, 413
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 2 cut(s) 391, 620
RsaI GTAC 2 cut(s) 293, 629
RsaNI GTAC 2 cut(s) 292, 628
SaqAI TTAA 5 cut(s) 143, 177, 188, 296, 602
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 305
SetI ASST 5 cut(s) 172, 207, 393, 449, 622
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 238
SphI GCATGC 1 cut(s) 44
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 338
TaqI TCGA 1 cut(s) 610
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 5 cut(s) 143, 177, 188, 296, 602
Tru9I TTAA 5 cut(s) 143, 177, 188, 296, 602
TscAI CASTG 2 cut(s) 424, 555
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 6 cut(s) 17, 78, 249, 370, 482, 507
TspGWI ACGGA 2 cut(s) 188, 578
TspRI CASTG 2 cut(s) 424, 555
Van91I CCANNNNNTGG 2 cut(s) 16, 623
VneI GTGCAC 1 cut(s) 301
XapI RAATTY 4 cut(s) 48, 122, 469, 612
XceI RCATGY 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 51, 240
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.