Rmu_sc0003170.1_g000008

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003170.1
OG0000241
Physical Location & Seq
Forward (+)
32586 .. 34452
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003170.1_g000008.1.cds

Sequence Viewer

Length: 1488 bp
atgatggagcagaagcgtatgttattggctactggaagttgtcagggtgaaggaccctgtactgtgaatatgattgacagatttagcaatcttccagagggagtttttcatcacattctttcaaaattcggtattaaagaccttgcccgattctgctgtgtctccaaacgatggagagaattatgcctgtcgtctccgtcggtggaattttttggatttagtgaagatggaattatggatatggcatgtgagcttaggttgaagttggtgaatgcattggataggttcttgcttagtcgtggggataatgagatgaaaagctttgttcttttttgggatggtcacagtgatgaagagcttgacgaagcatgtttctgtgtcaatgagaatttccgaataatcacctggatccagaatgctgtgaggtgtaaagttgaaaaggttcatcttgacgtcaccttttttgattatgagggggagccattggcatttccatcttgcatctttcgttctgcatcattgaggtctatagtggttaatatgccacgtacagttgttaaaacaccctccttcactttttcctccaatatcgaaaagttgcatttaagtgatgttgttatacaggacgaggggtttttcgagtggatttcctattcctgcaaatccttgaaggatgtaactctttcagcagttcgtgagatacatagtatcaccattgaaagctcgtctttggaaagattttatttcattaattacgaggttgatgaaacctgccatattaacatctctggtgagaaacttgaagaaataaatgtcaggtgcaatcattcacctagcagcaccatattaaaaattgttgctccaaatgttaaacgtttgcttttggaggggaatgtgaaaaatcacctaaatctgggagaattgaaatgtttggaacaagccgccattcttatggagcctatagtagatgagtttaacaaagtatttgaggttctttccagtttgtgcagtgttgaagttcttgttctaaatgaagctaccatccaggctgcatacagggaggaatgcatgcaagctcgattggatgagatttggtacttgcaaatgaatattggtagctttgctgatgatctagtcccggcagtcgtctgtcttttaagaggaacaccagagttgtgtactttatacattcgctataaaccaacttcactcgaccctaaatctaatacatctgggtttgatgtggagtattggaagatgcaaaacctggattttgtttctcaggttgaggatgttaccatagagcttagtgctgggtctaatggaattgagttagctaggtatatacttgagcatgctgagagcctggagaaaatggtcattaggtatttagccgagcactctaatgctatggggaagttaaaagaaagtaagatgatctccaatcccttggttactttcgaggaatatgatagatcagttagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

495

Amino Acids

56.45

Weight (kDa)

4.97

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 171
AciI CCGC 1 cut(s) 942
AclI AACGTT 1 cut(s) 874
AclWI GGATC 2 cut(s) 403, 416
AcsI RAATTY 3 cut(s) 125, 206, 388
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 4 cut(s) 61, 550, 1097, 1180
AfiI CCNNNNNNNGG 2 cut(s) 171, 913
AgsI TTSAA 8 cut(s) 123, 262, 437, 670, 719, 803, 925, 1016
AjnI CCWGG 4 cut(s) 404, 1044, 1266, 1365
Alw21I GWGCWC 1 cut(s) 1401
Alw26I GTCTC 2 cut(s) 166, 198
AlwI GGATC 2 cut(s) 403, 416
ApeKI GCWGC 2 cut(s) 837, 1049
ApoI RAATTY 3 cut(s) 125, 206, 388
AseI ATTAAT 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 1139
AsuHPI GGTGA 8 cut(s) 59, 280, 394, 448, 703, 803, 822, 896
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 1401
BbvI GCAGC 2 cut(s) 849, 1036
BccI CCATC 5 cut(s) 165, 221, 332, 502, 1049
BciT130I CCWGG 4 cut(s) 406, 1046, 1268, 1367
BcnI CCSGG 1 cut(s) 1139
BcoDI GTCTC 2 cut(s) 166, 198
BfaI CTAG 3 cut(s) 834, 1133, 1338
BfmI CTRYAG 2 cut(s) 528, 960
BfuAI ACCTGC 1 cut(s) 779
BisI GCNGC 3 cut(s) 838, 942, 1050
BlsI GCNGC 3 cut(s) 839, 943, 1051
Bme1390I CCNGG 5 cut(s) 406, 1046, 1139, 1268, 1367
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 4 cut(s) 55, 410, 480, 957
BmrFI CCNGG 5 cut(s) 406, 1046, 1139, 1268, 1367
BmsI GCATC 3 cut(s) 510, 524, 1248
BpmI CTGGAG 1 cut(s) 1388
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1370
BpuMI CCSGG 1 cut(s) 1139
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 1449
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 913
Bse1I ACTGG 2 cut(s) 37, 999
BseBI CCWGG 4 cut(s) 406, 1046, 1268, 1367
BseDI CCNNGG 1 cut(s) 1449
BseGI GGATG 5 cut(s) 343, 679, 1041, 1090, 1297
BseLI CCNNNNNNNGG 2 cut(s) 171, 913
BseMII CTCAG 2 cut(s) 1295, 1350
BseNI ACTGG 2 cut(s) 37, 999
BseXI GCAGC 2 cut(s) 849, 1036
BseYI CCCAGC 1 cut(s) 1313
BsgI GTGCAG 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 1401
BsiSI CCGG 1 cut(s) 1139
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 2 cut(s) 171, 913
BsmAI GTCTC 2 cut(s) 166, 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 1121
BsmI GAATGC 3 cut(s) 277, 421, 1070
Bsp1286I GDGCHC 1 cut(s) 1401
Bsp143I GATC 4 cut(s) 408, 1129, 1437, 1475
BspACI CCGC 1 cut(s) 942
BspCNI CTCAG 2 cut(s) 1294, 1351
BspLI GGNNCC 4 cut(s) 55, 410, 480, 957
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 2 cut(s) 403, 416
BspQI GCTCTTC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 37, 999
BssECI CCNNGG 1 cut(s) 1449
BssMI GATC 4 cut(s) 408, 1129, 1437, 1475
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 1449
Bst2UI CCWGG 4 cut(s) 406, 1046, 1268, 1367
Bst4CI ACNGT 3 cut(s) 64, 347, 553
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 1070, 1074, 1356
BstDEI CTNAG 5 cut(s) 254, 293, 1281, 1307, 1359
BstF5I GGATG 5 cut(s) 343, 679, 1041, 1090, 1297
BstKTI GATC 4 cut(s) 411, 1132, 1440, 1478
BstMAI GTCTC 2 cut(s) 166, 198
BstMBI GATC 4 cut(s) 408, 1129, 1437, 1475
BstNI CCWGG 4 cut(s) 406, 1046, 1268, 1367
BstNSI RCATGY 4 cut(s) 249, 372, 1072, 1358
BstSCI CCNGG 5 cut(s) 404, 1044, 1137, 1266, 1365
BstSFI CTRYAG 2 cut(s) 528, 960
BstV1I GCAGC 2 cut(s) 849, 1036
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 2 cut(s) 952, 1450
BstYI RGATCY 1 cut(s) 408
BtsCI GGATG 5 cut(s) 343, 679, 1041, 1090, 1297
BtsI GCAGTG 1 cut(s) 1015
BtsIMutI CAGTG 2 cut(s) 352, 1015
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 3 cut(s) 1070, 1074, 1356
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 60, 549, 1096, 1179
CviAII CATG 4 cut(s) 246, 369, 1069, 1355
CviQI GTAC 4 cut(s) 60, 549, 1096, 1179
DdeI CTNAG 5 cut(s) 254, 293, 1281, 1307, 1359
DpnI GATC 4 cut(s) 410, 1131, 1439, 1477
DpnII GATC 4 cut(s) 408, 1129, 1437, 1475
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 1449
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 4 cut(s) 404, 1044, 1266, 1365
EcoT14I CCWWGG 1 cut(s) 1449
EcoT22I ATGCAT 2 cut(s) 277, 1070
ErhI CCWWGG 1 cut(s) 1449
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 4 cut(s) 249, 372, 1072, 1358
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 1 cut(s) 1121
FatI CATG 4 cut(s) 245, 368, 1068, 1354
Fnu4HI GCNGC 3 cut(s) 838, 942, 1050
FokI GGATG 5 cut(s) 350, 686, 1028, 1097, 1304
Fsp4HI GCNGC 3 cut(s) 838, 942, 1050
FspBI CTAG 3 cut(s) 834, 1133, 1338
GluI GCNGC 3 cut(s) 838, 942, 1050
GsaI CCCAGC 1 cut(s) 1317
GsuI CTGGAG 1 cut(s) 1388
HapII CCGG 1 cut(s) 1139
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 4 cut(s) 249, 372, 1072, 1358
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 1139
HphI GGTGA 8 cut(s) 59, 280, 394, 448, 703, 803, 822, 896
Hpy166II GTNNAC 1 cut(s) 1179
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 4 cut(s) 95, 412, 449, 695
Hpy8I GTNNAC 1 cut(s) 1179
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 44, 580, 664
HpyCH4III ACNGT 3 cut(s) 64, 347, 553
HpyCH4IV ACGT 3 cut(s) 453, 547, 874
HpyF3I CTNAG 5 cut(s) 254, 293, 1281, 1307, 1359
HpySE526I ACGT 3 cut(s) 453, 547, 874
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 4 cut(s) 249, 372, 1072, 1358
Kzo9I GATC 4 cut(s) 408, 1129, 1437, 1475
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 4 cut(s) 7, 478, 865, 955
Lsp1109I GCAGC 2 cut(s) 849, 1036
LweI GCATC 3 cut(s) 510, 524, 1248
MaeI CTAG 3 cut(s) 834, 1133, 1338
MaeII ACGT 3 cut(s) 453, 547, 874
MaeIII GTNAC 5 cut(s) 341, 454, 676, 1294, 1453
MalI GATC 4 cut(s) 410, 1131, 1439, 1477
MboI GATC 4 cut(s) 408, 1129, 1437, 1475
MboII GAAGA 5 cut(s) 83, 236, 365, 815, 1267
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 1401
MluCI AATT 9 cut(s) 125, 179, 206, 231, 388, 751, 852, 920, 1326
Mph1103I ATGCAT 2 cut(s) 277, 1070
MroXI GAANNNNTTC 1 cut(s) 441
MslI CAYNNNNRTG 4 cut(s) 348, 606, 950, 1404
MspI CCGG 1 cut(s) 1139
MspR9I CCNGG 5 cut(s) 406, 1046, 1139, 1268, 1367
Mva1269I GAATGC 3 cut(s) 277, 421, 1070
MvaI CCWGG 4 cut(s) 406, 1046, 1268, 1367
NciI CCSGG 1 cut(s) 1139
NdeII GATC 4 cut(s) 408, 1129, 1437, 1475
NlaIII CATG 4 cut(s) 249, 372, 1072, 1358
NlaIV GGNNCC 4 cut(s) 55, 410, 480, 957
NmeAIII GCCGAG 1 cut(s) 1420
NmuCI GTSAC 2 cut(s) 341, 454
NsiI ATGCAT 2 cut(s) 277, 1070
NspI RCATGY 4 cut(s) 249, 372, 1072, 1358
PaeI GCATGC 2 cut(s) 1072, 1358
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 3 cut(s) 277, 421, 1070
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 3 cut(s) 839, 943, 1051
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 750
Psp1406I AACGTT 1 cut(s) 874
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 4 cut(s) 404, 1044, 1266, 1365
PspFI CCCAGC 1 cut(s) 1313
PspGI CCWGG 4 cut(s) 404, 1044, 1266, 1365
PspN4I GGNNCC 4 cut(s) 55, 410, 480, 957
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 975, 1007
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 4 cut(s) 61, 550, 1097, 1180
RsaNI GTAC 4 cut(s) 60, 549, 1096, 1179
RseI CAYNNNNRTG 4 cut(s) 348, 606, 950, 1404
SapI GCTCTTC 1 cut(s) 348
SatI GCNGC 3 cut(s) 838, 942, 1050
Sau3AI GATC 4 cut(s) 408, 1129, 1437, 1475
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 406, 1046, 1139, 1268, 1367
SduI GDGCHC 1 cut(s) 1401
SfaNI GCATC 3 cut(s) 510, 524, 1248
SfcI CTRYAG 2 cut(s) 528, 960
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 4 cut(s) 348, 606, 950, 1404
SmlI CTYRAG 1 cut(s) 1349
SmoI CTYRAG 1 cut(s) 1349
SphI GCATGC 2 cut(s) 1072, 1358
Sse9I AATT 9 cut(s) 125, 179, 206, 231, 388, 751, 852, 920, 1326
SsiI CCGC 1 cut(s) 942
SspI AATATT 1 cut(s) 1111
SspMI CTAG 3 cut(s) 834, 1133, 1338
StyD4I CCNGG 5 cut(s) 404, 1044, 1137, 1266, 1365
StyI CCWWGG 1 cut(s) 1449
TaaI ACNGT 3 cut(s) 64, 347, 553
TaiI ACGT 3 cut(s) 456, 550, 877
TaqI TCGA 5 cut(s) 591, 639, 1078, 1212, 1461
TasI AATT 9 cut(s) 125, 179, 206, 231, 388, 751, 852, 920, 1326
TatI WGTACW 2 cut(s) 59, 1178
TauI GCSGC 1 cut(s) 944
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 2 cut(s) 352, 1015
TseFI GTSAC 2 cut(s) 341, 454
TseI GCWGC 2 cut(s) 837, 1049
Tsp45I GTSAC 2 cut(s) 341, 454
TspDTI ATGAA 8 cut(s) 98, 329, 366, 434, 736, 780, 1047, 1121
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 352, 1015
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 3 cut(s) 125, 206, 388
XceI RCATGY 4 cut(s) 249, 372, 1072, 1358
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 834, 1133, 1338
ZraI GACGTC 1 cut(s) 454
Zsp2I ATGCAT 2 cut(s) 277, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.