FvH4_6g19051

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000241
Physical Location & Seq
Forward (+)
12619433 .. 12621991
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19051.t1

Sequence Viewer

Length: 1125 bp
ATGGAGGCCCGCAAGCTCGGCCCGACCGGCCTAAAAGCATGTTGTAGATCTGCTCCAGCAGGCGTAGGTTGTGGAGGTGAAGTACGTCGTGGTGAGAATGAGAGTAGTATTGACAGATTTAGCGATATTCCGGATCCTGTTGCACATCACATTCTTTCCTTCCTGGCTTTGCCAGACCTTAGTCGTCGTCATTCTATGGACGAAGATGCGACACCGTGCATCTGTGATAATGAGCATTATCGATTGATGACATGGATCCAGAATGCAGTACGGTGTAATGTCGAAGTGCTTGATCTTAAGATGACTTTTTATGATAGTGAGACTGAGGTGATGTATTTGCCATCTTTTGTGTTTCTCTCTGCACATTTGAGGTCTCTGGTGGTGGTCATGAACTATACGGTCCTCAGAACCCCATCTTTTGCCTTTTCCTCTAATCTTAAGTATTTGCAGTTGAGAAATGTTTACATCGAAGATGTGCATTTTTTCGAATGGATCTCATGTTCCTGCAGTATCTCAAGTGAGAACCTTGTGGACTTAGATCTTTACTGGACATTTGATTCACCTAACAACAAATCCTTAACTGTTGATGCCCCAAATCTTAAATGTCTTAAATGGATTGGGAATTTGATGAAATACCCAAACCTGGGAAAACTAGAATGCTTAGAAACAGCTGCAGTTTCTCTGGTGCCTGAAGTAGATGAATTGGACAAGGTACATGACGTTCTTTGGAGTTTACGTAGGGCTCAAGCTCTTTTGCTAAATGAAGTGGCAAATAAGGCTACATTTATGGATGTATTTGTGCCAGCTCCATTGTATGATACTTCTTATTTGTATATGAATGTCGAAAGCTTTGTTGATGAGCTGATCCCGGCATTGGTATTTGGGTTTAATATGGAATACTGGAAGCCGCAAGACCTTGCTTTCACTAAGCAACTTAAGCATGTTACTATAGAGCTTTGCAGTGGGTCTAATGGAATTGAGTGGGCAAAGTATATGCTCAAGTATGCTCCGAATATGCAGAGAATGGTTGTGATTTGTTTGCCCGTAGATCTGAAGGAAGTTACAATGAAATTAAAGAAAATCAGGATGATTTCCAATGCCGTACTTGTCATTCAGGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

375

Amino Acids

42.67

Weight (kDa)

5.47

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 685
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 2 cut(s) 10, 908
AclWI GGATC 6 cut(s) 128, 141, 250, 263, 500, 859
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 2 cut(s) 711, 1073
AfaI GTAC 4 cut(s) 84, 270, 714, 1104
AfiI CCNNNNNNNGG 3 cut(s) 643, 644, 874
AflII CTTAAG 3 cut(s) 296, 437, 935
AjnI CCWGG 2 cut(s) 162, 642
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 7 cut(s) 16, 671, 749, 806, 849, 862, 955
AluI AGCT 7 cut(s) 16, 671, 749, 806, 849, 862, 955
Alw26I GTCTC 2 cut(s) 314, 378
AlwI GGATC 6 cut(s) 128, 141, 250, 263, 500, 859
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 3 cut(s) 6, 19, 28
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 622
AspS9I GGNCC 3 cut(s) 7, 20, 400
AsuC2I CCSGG 1 cut(s) 869
AsuHPI GGTGA 4 cut(s) 89, 104, 340, 552
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 2 cut(s) 133, 255
BanI GGYRCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 745
BbvI GCAGC 1 cut(s) 658
BccI CCATC 2 cut(s) 349, 421
BceAI ACGGC 1 cut(s) 1085
BciT130I CCWGG 2 cut(s) 164, 644
BcnI CCSGG 1 cut(s) 869
BcoDI GTCTC 2 cut(s) 314, 378
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 3 cut(s) 505, 672, 948
BfrI CTTAAG 3 cut(s) 296, 437, 935
BglI GCCNNNNNGGC 1 cut(s) 27
BglII AGATCT 3 cut(s) 47, 538, 1048
BisI GCNGC 2 cut(s) 672, 908
BlsI GCNGC 2 cut(s) 673, 909
Bme1390I CCNGG 3 cut(s) 164, 644, 869
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 7, 20, 400
BmiI GGNNCC 3 cut(s) 135, 257, 687
BmrFI CCNGG 3 cut(s) 164, 644, 869
BmsI GCATC 3 cut(s) 196, 228, 577
BoxI GACNNNNGTC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 3 cut(s) 499, 729, 983
BpuMI CCSGG 1 cut(s) 869
Bsa29I ATCGAT 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 737
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 643
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 721, 751
Bsc4I CCNNNNNNNGG 3 cut(s) 643, 644, 874
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 551, 905
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 2 cut(s) 164, 644
BseCI ATCGAT 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 2 cut(s) 796, 1092
BseLI CCNNNNNNNGG 3 cut(s) 643, 644, 874
BseMII CTCAG 2 cut(s) 315, 418
BseNI ACTGG 2 cut(s) 551, 905
BseXI GCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 8, 21, 30
BshNI GGYRCC 1 cut(s) 685
BshVI ATCGAT 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 27, 131, 869
BslI CCNNNNNNNGG 3 cut(s) 643, 644, 874
BsmAI GTCTC 2 cut(s) 314, 378
BsmI GAATGC 2 cut(s) 268, 662
BsnI GGCC 3 cut(s) 8, 21, 30
Bso31I GGTCTC 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 745
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
BspACI CCGC 2 cut(s) 10, 908
BspANI GGCC 3 cut(s) 8, 21, 30
BspCNI CTCAG 2 cut(s) 316, 417
BspDI ATCGAT 1 cut(s) 241
BspEI TCCGGA 1 cut(s) 130
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 135, 257, 687
BspMAI CTGCAG 2 cut(s) 509, 676
BspPI GGATC 6 cut(s) 128, 141, 250, 263, 500, 859
BspT104I TTCGAA 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 685
BspTI CTTAAG 3 cut(s) 296, 437, 935
BspTNI GGTCTC 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 551, 905
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
Bst2UI CCWGG 2 cut(s) 164, 644
Bst4CI ACNGT 4 cut(s) 216, 273, 400, 583
BstAFI CTTAAG 3 cut(s) 296, 437, 935
BstBAI YACGTR 1 cut(s) 737
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 4 cut(s) 10, 14, 61, 804
BstDEI CTNAG 6 cut(s) 179, 324, 404, 535, 661, 927
BstF5I GGATG 2 cut(s) 796, 1092
BstKTI GATC 8 cut(s) 50, 136, 258, 295, 495, 541, 867, 1051
BstMAI GTCTC 2 cut(s) 314, 378
BstMBI GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 4 cut(s) 18, 27, 776, 937
BstNI CCWGG 2 cut(s) 164, 644
BstNSI RCATGY 2 cut(s) 42, 944
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 3 cut(s) 162, 642, 867
BstSFI CTRYAG 3 cut(s) 505, 672, 948
BstSNI TACGTA 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 6 cut(s) 47, 133, 255, 492, 538, 1048
BstYI RGATCY 6 cut(s) 47, 133, 255, 492, 538, 1048
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 3 cut(s) 8, 21, 30
BsuTUI ATCGAT 1 cut(s) 241
BtsCI GGATG 2 cut(s) 796, 1092
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 1 cut(s) 967
Cac8I GCNNGC 4 cut(s) 10, 14, 61, 804
CciI TCATGA 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 7, 20, 400
ClaI ATCGAT 1 cut(s) 241
Csp6I GTAC 4 cut(s) 83, 269, 713, 1103
CviAII CATG 6 cut(s) 39, 252, 388, 498, 716, 941
CviQI GTAC 4 cut(s) 83, 269, 713, 1103
DdeI CTNAG 6 cut(s) 179, 324, 404, 535, 661, 927
DpnI GATC 8 cut(s) 49, 135, 257, 294, 494, 540, 866, 1050
DpnII GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
Eco105I TACGTA 1 cut(s) 737
Eco24I GRGCYC 1 cut(s) 745
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 711, 1073
EcoRII CCWGG 2 cut(s) 162, 642
EcoT38I GRGCYC 1 cut(s) 745
FaeI CATG 6 cut(s) 42, 255, 391, 501, 719, 944
FatI CATG 6 cut(s) 38, 251, 387, 497, 715, 940
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 672, 908
FokI GGATG 2 cut(s) 803, 1099
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 2 cut(s) 672, 908
FspBI CTAG 1 cut(s) 653
GluI GCNGC 2 cut(s) 672, 908
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 3 cut(s) 8, 21, 30
HapII CCGG 3 cut(s) 27, 131, 869
Hin1II CATG 6 cut(s) 42, 255, 391, 501, 719, 944
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 1 cut(s) 557
HpaII CCGG 3 cut(s) 27, 131, 869
HphI GGTGA 4 cut(s) 89, 104, 340, 552
Hpy166II GTNNAC 3 cut(s) 463, 532, 734
Hpy188I TCNGA 3 cut(s) 407, 1011, 1053
Hpy188III TCNNGA 5 cut(s) 131, 259, 388, 1084, 1115
Hpy8I GTNNAC 3 cut(s) 463, 532, 734
Hpy99I CGWCG 2 cut(s) 90, 189
HpyAV CCTTC 2 cut(s) 169, 1048
HpyCH4III ACNGT 4 cut(s) 216, 273, 400, 583
HpyCH4IV ACGT 3 cut(s) 85, 720, 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 27, 776, 937
HpyF3I CTNAG 6 cut(s) 179, 324, 404, 535, 661, 927
HpySE526I ACGT 3 cut(s) 85, 720, 736
Hsp92II CATG 6 cut(s) 42, 255, 391, 501, 719, 944
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
LmnI GCTCC 3 cut(s) 58, 811, 1012
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 196, 228, 577
MaeI CTAG 1 cut(s) 653
MaeII ACGT 3 cut(s) 85, 720, 736
MaeIII GTNAC 2 cut(s) 943, 1060
MalI GATC 8 cut(s) 49, 135, 257, 294, 494, 540, 866, 1050
MboI GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
MboII GAAGA 2 cut(s) 215, 482
MflI RGATCY 6 cut(s) 47, 133, 255, 492, 538, 1048
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 4 cut(s) 622, 701, 975, 1070
MnlI CCTC 5 cut(s) 68, 319, 363, 413, 439
MroI TCCGGA 1 cut(s) 130
MseI TTAA 8 cut(s) 297, 438, 578, 600, 609, 888, 936, 1073
MspA1I CMGCKG 1 cut(s) 671
MspCI CTTAAG 3 cut(s) 296, 437, 935
MspI CCGG 3 cut(s) 27, 131, 869
MspR9I CCNGG 3 cut(s) 164, 644, 869
Mva1269I GAATGC 2 cut(s) 268, 662
MvaI CCWGG 2 cut(s) 164, 644
MwoI GCNNNNNNNGC 4 cut(s) 18, 27, 776, 937
NciI CCSGG 1 cut(s) 869
NdeII GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
NlaIII CATG 6 cut(s) 42, 255, 391, 501, 719, 944
NlaIV GGNNCC 3 cut(s) 135, 257, 687
NspI RCATGY 2 cut(s) 42, 944
NspV TTCGAA 1 cut(s) 486
PagI TCATGA 1 cut(s) 387
PctI GAATGC 2 cut(s) 268, 662
PfeI GAWTC 1 cut(s) 557
PkrI GCNGC 2 cut(s) 673, 909
Ppu21I YACGTR 1 cut(s) 737
PshAI GACNNNNGTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 162, 642
PspGI CCWGG 2 cut(s) 162, 642
PspN4I GGNNCC 3 cut(s) 135, 257, 687
PspPI GGNCC 3 cut(s) 7, 20, 400
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
PstI CTGCAG 2 cut(s) 509, 676
PsuI RGATCY 6 cut(s) 47, 133, 255, 492, 538, 1048
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 84, 270, 714, 1104
RsaNI GTAC 4 cut(s) 83, 269, 713, 1103
SaqAI TTAA 8 cut(s) 297, 438, 578, 600, 609, 888, 936, 1073
SatI GCNGC 2 cut(s) 672, 908
Sau3AI GATC 8 cut(s) 47, 133, 255, 292, 492, 538, 864, 1048
Sau96I GGNCC 3 cut(s) 7, 20, 400
ScrFI CCNGG 3 cut(s) 164, 644, 869
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 3 cut(s) 196, 228, 577
SfcI CTRYAG 3 cut(s) 505, 672, 948
SfiI GGCCNNNNNGGCC 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 400
SmlI CTYRAG 6 cut(s) 296, 437, 514, 744, 935, 998
SmoI CTYRAG 6 cut(s) 296, 437, 514, 744, 935, 998
SnaBI TACGTA 1 cut(s) 737
Sse9I AATT 4 cut(s) 622, 701, 975, 1070
SsiI CCGC 2 cut(s) 10, 908
SspMI CTAG 1 cut(s) 653
StyD4I CCNGG 3 cut(s) 162, 642, 867
TaaI ACNGT 4 cut(s) 216, 273, 400, 583
TaiI ACGT 3 cut(s) 88, 723, 739
TaqI TCGA 5 cut(s) 241, 282, 468, 486, 843
TasI AATT 4 cut(s) 622, 701, 975, 1070
TauI GCSGC 1 cut(s) 910
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 8 cut(s) 297, 438, 578, 600, 609, 888, 936, 1073
Tru9I TTAA 8 cut(s) 297, 438, 578, 600, 609, 888, 936, 1073
TscAI CASTG 1 cut(s) 967
TseI GCWGC 1 cut(s) 671
TspDTI ATGAA 6 cut(s) 404, 644, 714, 777, 851, 1082
TspRI CASTG 1 cut(s) 967
Vha464I CTTAAG 3 cut(s) 296, 437, 935
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 622
XceI RCATGY 2 cut(s) 42, 944
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.