Rmu_sc0004507.1_g000033

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0018054
Physical Location & Seq
Forward (+)
146609 .. 147253
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000033.1.cds

Sequence Viewer

Length: 645 bp
atgccaaccactgaaaacctagggatcaggaggcaggccactctgttcaagaaggctcatcaattgtcagttttatgtgatgcggaggtggcgatcatcgctttcacaagcaatggaaagcttcatgaattctcgagcaccagcatggagcacactctttcgagatacaagggcaaggtggagcagtctaggccagaagagagccgccgccacgaacctgcgaaactggatgagccaaaaccatgtaacaattacattcttcatgaactgaagggaaaacatgcagcgctgagcttggagatctcgcggaggatgggaaaagagttggatgacttgagtagggaagagctgtgtgccctagaggagcaacaactttgggcgttgttatctgtcaatgataagaagaaggaactacttgtggagatgttgcagaggtctatgtcgcgtgatgaacagcgagctgtgcaggagaaagagaacctgatcagagggtttgaggggaggaggagggaaaggccatatgtccttcaagaccatggcctgaataggatggttcacggcacaaaattgaaagctgtttcactttacaatcgtccattacagatcagcgatgagcattccgacatcttgcaactgcggctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

214

Amino Acids

24.83

Weight (kDa)

8.72

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018054)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19060
rosa_chinensis RchiOBHm_Chr3g0474101
rosa_laevigata RLG00000023950
rosa_multiflora Rmu_sc0004507.1_g000033
rosa_roxburghii Rroxscaffold_6G00407480
rosa_rugosa Rorug03G0138800
rosa_samantha Rh3AG188800 Rh3BG218200 Rh3CG213900 Rh3DG213400
rosa_wichuraiana Rw3G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccII CGCG 2 cut(s) 307, 445
AciI CCGC 5 cut(s) 83, 205, 208, 307, 637
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 290
AfeI AGCGCT 1 cut(s) 288
AgsI TTSAA 3 cut(s) 49, 530, 571
AluBI AGCT 5 cut(s) 121, 294, 349, 461, 575
AluI AGCT 5 cut(s) 121, 294, 349, 461, 575
Alw21I GWGCWC 2 cut(s) 140, 153
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 4 cut(s) 36, 191, 515, 538
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 133
AvrII CCTAGG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 358
Bbv12I GWGCWC 2 cut(s) 140, 153
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 307, 544
BceAI ACGGC 1 cut(s) 574
BclI TGATCA 1 cut(s) 483
BfaI CTAG 3 cut(s) 20, 189, 359
BfoI RGCGCY 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 226
BglII AGATCT 1 cut(s) 300
BisI GCNGC 4 cut(s) 205, 208, 285, 638
BlnI CCTAGG 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 4 cut(s) 206, 209, 286, 639
BmeT110I CYCGRG 1 cut(s) 133
BmsI GCATC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 19, 535
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 19, 535
BseGI GGATG 4 cut(s) 235, 318, 334, 555
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 377, 517, 520
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 2 cut(s) 307, 445
BshFI GGCC 4 cut(s) 38, 193, 517, 540
BsiHKAI GWGCWC 2 cut(s) 140, 153
BsiHKCI CYCGRG 1 cut(s) 133
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 4 cut(s) 38, 193, 517, 540
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 3 cut(s) 140, 153, 358
Bsp143I GATC 5 cut(s) 24, 93, 300, 483, 603
Bsp1720I GCTNAGC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 5 cut(s) 83, 205, 208, 307, 637
BspANI GGCC 4 cut(s) 38, 193, 517, 540
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 2 cut(s) 307, 445
BspHI TCATGA 2 cut(s) 124, 262
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 19, 535
BssMI GATC 5 cut(s) 24, 93, 300, 483, 603
BssT1I CCWWGG 2 cut(s) 19, 535
Bst6I CTCTTC 2 cut(s) 192, 339
BstC8I GCNNGC 2 cut(s) 36, 459
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 4 cut(s) 235, 318, 334, 555
BstFNI CGCG 2 cut(s) 307, 445
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 5 cut(s) 27, 96, 303, 486, 606
BstMBI GATC 5 cut(s) 24, 93, 300, 483, 603
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 190, 463, 637
BstNSI RCATGY 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 2 cut(s) 307, 445
BstV1I GCAGC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 4 cut(s) 38, 193, 517, 540
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 2 cut(s) 82, 624
BtsCI GGATG 4 cut(s) 235, 318, 334, 555
BtsIMutI CAGTG 1 cut(s) 9
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 36, 459
CciI TCATGA 2 cut(s) 124, 262
CfoI GCGC 1 cut(s) 289
CviAII CATG 6 cut(s) 125, 145, 243, 263, 281, 536
DdeI CTNAG 1 cut(s) 290
DpnI GATC 5 cut(s) 26, 95, 302, 485, 605
DpnII GATC 5 cut(s) 24, 93, 300, 483, 603
Eam1104I CTCTTC 2 cut(s) 192, 339
EarI CTCTTC 2 cut(s) 192, 339
Eco130I CCWWGG 2 cut(s) 19, 535
Eco47III AGCGCT 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 19, 535
ErhI CCWWGG 2 cut(s) 19, 535
FaeI CATG 6 cut(s) 128, 148, 246, 266, 284, 539
FatI CATG 6 cut(s) 124, 144, 242, 262, 280, 535
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 4 cut(s) 205, 208, 285, 638
FokI GGATG 4 cut(s) 242, 325, 341, 562
Fsp4HI GCNGC 4 cut(s) 205, 208, 285, 638
FspBI CTAG 3 cut(s) 20, 189, 359
GlaI GCGC 1 cut(s) 288
GluI GCNGC 4 cut(s) 205, 208, 285, 638
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 4 cut(s) 38, 193, 517, 540
HhaI GCGC 1 cut(s) 289
Hin1II CATG 6 cut(s) 128, 148, 246, 266, 284, 539
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 488, 622
Hpy188III TCNNGA 7 cut(s) 28, 49, 125, 133, 162, 263, 530
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 4 cut(s) 46, 265, 400, 536
HpyCH4V TGCA 4 cut(s) 284, 430, 466, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 190, 463, 637
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 6 cut(s) 128, 148, 246, 266, 284, 539
HspAI GCGC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 24, 93, 300, 483, 603
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 148, 181, 364
LpnPI CCDG 9 cut(s) 13, 20, 154, 207, 212, 231, 452, 494, 554
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 70
MaeI CTAG 3 cut(s) 20, 189, 359
MaeIII GTNAC 1 cut(s) 245
MalI GATC 5 cut(s) 26, 95, 302, 485, 605
MboI GATC 5 cut(s) 24, 93, 300, 483, 603
MboII GAAGA 4 cut(s) 209, 251, 356, 415
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 3 cut(s) 140, 153, 358
MluCI AATT 4 cut(s) 62, 128, 250, 566
MmeI TCCRAC 2 cut(s) 306, 645
MslI CAYNNNNRTG 1 cut(s) 143
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 616
MvnI CGCG 2 cut(s) 307, 445
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 190, 463, 637
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 1 cut(s) 520
NdeII GATC 5 cut(s) 24, 93, 300, 483, 603
NlaIII CATG 6 cut(s) 128, 148, 246, 266, 284, 539
NspI RCATGY 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 133
PagI TCATGA 2 cut(s) 124, 262
PciSI GCTCTTC 1 cut(s) 339
PctI GAATGC 1 cut(s) 616
PkrI GCNGC 4 cut(s) 206, 209, 286, 639
PsuI RGATCY 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 339
SatI GCNGC 4 cut(s) 205, 208, 285, 638
Sau3AI GATC 5 cut(s) 24, 93, 300, 483, 603
SduI GDGCHC 3 cut(s) 140, 153, 358
SfaNI GCATC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 133, 334
SmoI CTYRAG 2 cut(s) 133, 334
Sse9I AATT 4 cut(s) 62, 128, 250, 566
SsiI CCGC 5 cut(s) 83, 205, 208, 307, 637
SspMI CTAG 3 cut(s) 20, 189, 359
StyI CCWWGG 2 cut(s) 19, 535
TaqI TCGA 2 cut(s) 134, 161
TasI AATT 4 cut(s) 62, 128, 250, 566
TauI GCSGC 3 cut(s) 207, 210, 640
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 113, 141, 251, 279, 465
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 19
XspI CTAG 3 cut(s) 20, 189, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.