FvH4_6g19471

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017332
Physical Location & Seq
Reverse (-)
13025285 .. 13025980
696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19471.t1

Sequence Viewer

Length: 696 bp
ATGGATTACTGCTCAGAGGATTGGTGCTTTGTCTGCAAAGATGGTGGCGATCTAATGCTTTGCGACCATGAAGGTTGCACTAAAGTTTATCATCCTAAATGTGTGGGACGGAAGAAATCCTTCCTCAAAAGCAAGAAGCTCTGGACTTGCAGCAGGCATTGCTGTTATGTGTGCCGAAACAACGGATCAACCACCTCGGTGGCAATTAGTTTCTCATGCCTTTGTTGTCCTTACGCACTATGTGACCCTTGCTACACAGCAAGTAGTAGTACTGGTGCTGCTGAGTTTTCACTGCTCAGAGGGAAGGATAAGTCGGGCCTTTGCAACGACTGTTTAGAGGTGGTTAGGCTTGCAGAAGAAAACTCGGAGGATGGAGCAGATGGAGAGAAACTAGACTTTGAAAACCAGGACTCATTCGAATGCCGACTCAAAGAGTATTGGGAATTTATAAAGAAAAACGAGGGCTTGACTTTGAATGATGTCTATTCCCCAAAAGATGGAAAAAGGAAAAGTCTAGACGAATTTATAGGCAGATCAAAACCTCTGCTTCAGTTCCAGAACTATATGAAACTCAATGCGAAGAAACCGCGGACATCAGCTGTTGGAGATCAAGGGCTGAGAGAGATGAAAATGGAGTGTAGACTGTTGGAAATTTCAGATTTCAGACAATTGCTGATGTCTGTTGCACTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

232

Amino Acids

26.2

Weight (kDa)

6.79

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 8 - 53 6.2e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19471
rosa_laevigata RLG00000023894 RLG00000023895
rosa_multiflora Rmu_sc0004848.1_g000006
rosa_roxburghii Rroxscaffold_6G00406840
rosa_rugosa Rorug03G0144000
rosa_samantha Rh3AG193700 Rh3AG193800 Rh3BG223500 Rh3BG223600 Rh3CG218400 Rh3CG218500 Rh3DG219500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 497
AccI GTMKAC 1 cut(s) 640
AccII CGCG 1 cut(s) 589
AciI CCGC 2 cut(s) 587, 589
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 3 cut(s) 443, 521, 651
AcuI CTGAAG 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 401, 475
AjnI CCWGG 1 cut(s) 405
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 2 cut(s) 139, 599
AluI AGCT 2 cut(s) 139, 599
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 150, 278
ApoI RAATTY 3 cut(s) 443, 521, 651
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 417
BbvI GCAGC 2 cut(s) 162, 265
BccI CCATC 4 cut(s) 35, 365, 374, 491
BciT130I CCWGG 1 cut(s) 407
BfaI CTAG 2 cut(s) 392, 515
BisI GCNGC 2 cut(s) 151, 279
BlsI GCNGC 2 cut(s) 152, 280
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 195, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 195, 587
BseGI GGATG 2 cut(s) 91, 376
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 4 cut(s) 27, 273, 310, 608
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 162, 265
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 4 cut(s) 49, 185, 533, 607
BspACI CCGC 2 cut(s) 587, 589
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 4 cut(s) 26, 274, 309, 609
BspFNI CGCG 1 cut(s) 589
BspPI GGATC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 195, 587
BssMI GATC 4 cut(s) 49, 185, 533, 607
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 332, 645
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 155, 351
BstDEI CTNAG 4 cut(s) 13, 282, 296, 617
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 2 cut(s) 91, 376
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 4 cut(s) 52, 188, 536, 610
BstMBI GATC 4 cut(s) 49, 185, 533, 607
BstMWI GCNNNNNNNGC 2 cut(s) 33, 159
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 162, 265
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 2 cut(s) 91, 376
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 155, 351
Cfr13I GGNCC 1 cut(s) 316
Cfr42I CCGCGG 1 cut(s) 590
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 2 cut(s) 68, 216
CviJI RGCY 6 cut(s) 139, 318, 349, 465, 599, 616
CviKI_1 RGCY 6 cut(s) 139, 318, 349, 465, 599, 616
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 4 cut(s) 13, 282, 296, 617
DpnI GATC 4 cut(s) 51, 187, 535, 609
DpnII GATC 4 cut(s) 49, 185, 533, 607
DraIII CACNNNGTG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 2 cut(s) 71, 219
FaiI YATR 8 cut(s) 69, 168, 217, 241, 449, 527, 564, 566
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 67, 215
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 151, 279
FokI GGATG 2 cut(s) 78, 383
Fsp4HI GCNGC 2 cut(s) 151, 279
FspBI CTAG 2 cut(s) 392, 515
GluI GCNGC 2 cut(s) 151, 279
HaeIII GGCC 1 cut(s) 318
Hin1II CATG 2 cut(s) 71, 219
HinfI GANTC 2 cut(s) 410, 426
Hpy166II GTNNAC 1 cut(s) 641
Hpy188I TCNGA 5 cut(s) 16, 299, 367, 658, 665
Hpy188III TCNNGA 3 cut(s) 142, 515, 556
Hpy8I GTNNAC 1 cut(s) 641
HpyAV CCTTC 3 cut(s) 65, 130, 298
HpyCH4III ACNGT 2 cut(s) 332, 645
HpyCH4V TGCA 6 cut(s) 36, 78, 150, 324, 353, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 159
HpyF3I CTNAG 4 cut(s) 13, 282, 296, 617
Hsp92II CATG 2 cut(s) 71, 219
KspI CCGCGG 1 cut(s) 590
Kzo9I GATC 4 cut(s) 49, 185, 533, 607
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 6 cut(s) 127, 139, 258, 392, 419, 569
Lsp1109I GCAGC 2 cut(s) 162, 265
MaeI CTAG 2 cut(s) 392, 515
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 51, 187, 535, 609
MboI GATC 4 cut(s) 49, 185, 533, 607
MboII GAAGA 3 cut(s) 124, 368, 592
MfeI CAATTG 1 cut(s) 668
MluCI AATT 5 cut(s) 204, 443, 521, 651, 668
MlyI GAGTC 2 cut(s) 404, 420
MmeI TCCRAC 2 cut(s) 583, 627
MnlI CCTC 8 cut(s) 10, 134, 205, 293, 331, 361, 454, 552
MroXI GAANNNNTTC 1 cut(s) 119
MslI CAYNNNNRTG 2 cut(s) 197, 418
MspA1I CMGCKG 2 cut(s) 589, 599
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 668
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 33, 159
NdeII GATC 4 cut(s) 49, 185, 533, 607
NlaIII CATG 2 cut(s) 71, 219
NmuCI GTSAC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 197
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 152, 280
PleI GAGTC 2 cut(s) 404, 420
PpsI GAGTC 2 cut(s) 404, 420
PsiI TTATAA 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 197, 418
SacII CCGCGG 1 cut(s) 590
SatI GCNGC 2 cut(s) 151, 279
Sau3AI GATC 4 cut(s) 49, 185, 533, 607
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 2 cut(s) 404, 420
ScrFI CCNGG 1 cut(s) 407
SetI ASST 6 cut(s) 76, 141, 197, 342, 544, 601
Sfr303I CCGCGG 1 cut(s) 590
SfuI TTCGAA 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 197, 418
Sse9I AATT 5 cut(s) 204, 443, 521, 651, 668
SsiI CCGC 2 cut(s) 587, 589
SspMI CTAG 2 cut(s) 392, 515
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 332, 645
TaqI TCGA 1 cut(s) 417
TasI AATT 5 cut(s) 204, 443, 521, 651, 668
TatI WGTACW 1 cut(s) 269
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 2 cut(s) 150, 278
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 84, 581, 641
TspGWI ACGGA 2 cut(s) 124, 198
TspRI CASTG 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 3 cut(s) 443, 521, 651
XbaI TCTAGA 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 392, 515
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.