Rorug03G0144000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017332
Physical Location & Seq
Reverse (-)
11801083 .. 11801595
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0144000.1

Sequence Viewer

Length: 513 bp
ATGCTTTGCAGTCGGAGCAGTACCAGGTGGACTCCCACTCCAGATCAGATAAGAATCCTCAATGATCTTTTCTATAGCAAGGGAGTTAGGTCCCCAACCGTAGAGCAGGTTCAGCGGATCTGTTTTCATTTGAGACCGTACGGACAAATTGAGGCCAAGAATGTATTTTATTGGTTTCAGAACCACAAGGCTCGGGATAAACGGAAGAAGAAGATCACTTCGGATATTCATGTGCCCATGAAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTTAATTTTGGGTCAACTAGCTCTACTGTTATGGAACAACGAGGAGAAGATCACCAGGCGATTGAAACTCTTCCACTGTTCCCCATGCACAGTGAAGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTATGGCAATTACTCTAGTGGCTGGGGCGGCTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTCCGGATCTGTTGATTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.85

Weight (kDa)

9.33

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 8 - 68 8.9e-12 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19471
rosa_laevigata RLG00000023894 RLG00000023895
rosa_multiflora Rmu_sc0004848.1_g000006
rosa_roxburghii Rroxscaffold_6G00406840
rosa_rugosa Rorug03G0144000
rosa_samantha Rh3AG193700 Rh3AG193800 Rh3BG223500 Rh3BG223600 Rh3CG218400 Rh3CG218500 Rh3DG219500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 4 cut(s) 115, 411, 441, 450
AclWI GGATC 4 cut(s) 125, 258, 271, 502
AfaI GTAC 2 cut(s) 22, 140
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 2 cut(s) 23, 327
AluBI AGCT 2 cut(s) 294, 475
AluI AGCT 2 cut(s) 294, 475
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 4 cut(s) 125, 258, 271, 502
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 1 cut(s) 153
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 477
BbsI GAAGAC 2 cut(s) 375, 395
Bbv12I GWGCWC 1 cut(s) 477
BciT130I CCWGG 2 cut(s) 25, 329
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 291, 429
BfmI CTRYAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 2 cut(s) 412, 442
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 2 cut(s) 413, 443
Bme1390I CCNGG 2 cut(s) 25, 329
Bme18I GGWCC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 92, 265
BmrFI CCNGG 2 cut(s) 25, 329
BpiI GAAGAC 2 cut(s) 375, 395
BpmI CTGGAG 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse8I GATNNNNATC 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 2 cut(s) 25, 329
BseDI CCNNGG 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 53
BseMII CTCAG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 330, 478
BseSI GKGCMC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 492
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 237, 477
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 4 cut(s) 115, 411, 441, 450
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 489
BspEI TCCGGA 1 cut(s) 491
BspLI GGNNCC 2 cut(s) 92, 265
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 4 cut(s) 125, 258, 271, 502
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
Bst2UI CCWGG 2 cut(s) 25, 329
Bst4CI ACNGT 5 cut(s) 100, 138, 301, 351, 365
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 476, 510
BstKTI GATC 8 cut(s) 46, 67, 120, 216, 248, 266, 325, 497
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
BstMWI GCNNNNNNNGC 5 cut(s) 15, 112, 417, 441, 447
BstNI CCWGG 2 cut(s) 25, 329
BstSCI CCNGG 2 cut(s) 23, 327
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 375, 395
BstX2I RGATCY 3 cut(s) 117, 263, 494
BstYI RGATCY 3 cut(s) 117, 263, 494
BsuRI GGCC 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 347, 370
BveI ACCTGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 23
Csp6I GTAC 2 cut(s) 21, 139
CviAII CATG 4 cut(s) 230, 238, 358, 385
CviQI GTAC 2 cut(s) 21, 139
DdeI CTNAG 2 cut(s) 476, 510
DpnI GATC 8 cut(s) 45, 66, 119, 215, 247, 265, 324, 496
DpnII GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 23, 327
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 4 cut(s) 233, 241, 361, 388
FaiI YATR 8 cut(s) 75, 231, 239, 305, 359, 386, 417, 447
FaqI GGGAC 1 cut(s) 76
FatI CATG 4 cut(s) 229, 237, 357, 384
Fnu4HI GCNGC 2 cut(s) 412, 442
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 412, 442
FspBI CTAG 2 cut(s) 291, 429
GluI GCNGC 2 cut(s) 412, 442
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 492
Hin1II CATG 4 cut(s) 233, 241, 361, 388
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 31, 54
HpaII CCGG 1 cut(s) 492
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 30, 288
Hpy188I TCNGA 5 cut(s) 15, 48, 180, 223, 400
Hpy188III TCNNGA 3 cut(s) 41, 194, 492
Hpy8I GTNNAC 2 cut(s) 30, 288
HpyCH4III ACNGT 5 cut(s) 100, 138, 301, 351, 365
HpyCH4V TGCA 2 cut(s) 9, 361
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 112, 417, 441, 447
HpyF3I CTNAG 2 cut(s) 476, 510
Hsp92II CATG 4 cut(s) 233, 241, 361, 388
Kpn2I TCCGGA 1 cut(s) 491
Kzo9I GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 9 cut(s) 10, 37, 54, 92, 234, 314, 341, 421, 505
MabI ACCWGGT 1 cut(s) 23
MaeI CTAG 2 cut(s) 291, 429
MalI GATC 8 cut(s) 45, 66, 119, 215, 247, 265, 324, 496
MboI GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
MboII GAAGA 7 cut(s) 217, 220, 223, 332, 335, 380, 400
MflI RGATCY 3 cut(s) 117, 263, 494
MhlI GDGCHC 2 cut(s) 237, 477
MluCI AATT 3 cut(s) 147, 277, 421
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 7 cut(s) 68, 145, 308, 394, 398, 491, 499
MroI TCCGGA 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 270, 276
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 25, 329
MvaI CCWGG 2 cut(s) 25, 329
MwoI GCNNNNNNNGC 5 cut(s) 15, 112, 417, 441, 447
NdeII GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
NlaIII CATG 4 cut(s) 233, 241, 361, 388
NlaIV GGNNCC 2 cut(s) 92, 265
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 54
Pfl23II CGTACG 1 cut(s) 138
PkrI GCNGC 2 cut(s) 413, 443
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 23, 327
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 2 cut(s) 23, 327
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 92, 265
PspPI GGNCC 1 cut(s) 90
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PsuI RGATCY 3 cut(s) 117, 263, 494
RsaI GTAC 2 cut(s) 22, 140
RsaNI GTAC 2 cut(s) 21, 139
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 270, 276
SatI GCNGC 2 cut(s) 412, 442
Sau3AI GATC 8 cut(s) 43, 64, 117, 213, 245, 263, 322, 494
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 25, 329
SduI GDGCHC 2 cut(s) 237, 477
SetI ASST 6 cut(s) 29, 92, 111, 296, 409, 477
SexAI ACCWGGT 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 147, 277, 421
SsiI CCGC 4 cut(s) 115, 411, 441, 450
SspMI CTAG 2 cut(s) 291, 429
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 23, 327
TaaI ACNGT 5 cut(s) 100, 138, 301, 351, 365
TasI AATT 3 cut(s) 147, 277, 421
TauI GCSGC 2 cut(s) 414, 444
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 270, 276
Tru9I TTAA 2 cut(s) 270, 276
TscAI CASTG 2 cut(s) 354, 370
TspDTI ATGAA 4 cut(s) 116, 218, 254, 401
TspGWI ACGGA 2 cut(s) 156, 217
TspRI CASTG 2 cut(s) 354, 370
VpaK11BI GGWCC 1 cut(s) 90
VspI ATTAAT 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 291, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.